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David J. Clarke

university college cork

44H-index
193Paper Count
7.0KCitation Count
Published Papers 52
Publication Date
Integrated Omics-Based Discovery of Bioactive Halogenated Metabolites from the Deep-Sea Streptomyces sp. B188M101
err2025-09-20
err0
PREAI
errEmmanuel Tope Oluwabusola; Stephen A. Jackson; Cristina Brunati; Stefanie Gackstatter; Hannah Vedder; Marianna Iorio; Gargee Chawande; Lekha Menon Margassery; Giang-Son Nguyen; David J. Clarke; Rainer Ebel; Marcel Jaspars; Alan D. W. Dobson
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BT1549 coordinates the in vitro IL-10 inducing activity of Bacteroides thetaiotaomicron
err2025-01-27
err0
errOAAI
errEngelhart, Morgan J.; Brock, Orion D.; Till, Jessica M.; Glowacki, Robert W. P.; Cantwell, Jason W.; Clarke, David J.; Wesener, Darryl A.; Ahern, Philip P.
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Bacterial bioluminescence is an important regulator of multitrophic interactions in the soil
err2024-10-01
err1
errOAAI
errMuller, Arthur; Morales-Montero, Patricia; Boss, Anja; Hiltmann, Alexandre; Castaneda-Alvarez, Carlos; Bhat, Aashaq H.; Arce, Carla C. M.; Glauser, Gaetan; Joyce, Susan A.; Clarke, David J.; Machado, Ricardo A. R.
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Identification and expression of MarCE, a marine carboxylesterase with synthetic ester-degrading activity
err2024-06-17
err1
errOAAI
errCarr, Clodagh M.; Gottsch, Frederike; de Oliveira, Bruno Francesco Rodrigues; Murcia, Pedro A. Sanchez; Jackson, Stephen A.; Wei, Ren; Clarke, David J.; Bornscheuer, Uwe T.; Dobson, Alan D. W.
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Purification and biochemical characterization of SM14est, a PET-hydrolyzing enzyme from the marine sponge-derived Streptomyces sp. SM14
err2023-05-12
err10
errOAAI
errCarr, Clodagh M.; Keller, Malene B.; Paul, Bijoya; Schubert, Sune W.; Clausen, Kristine S. R.; Jensen, Kenneth; Clarke, David J.; Westh, Peter; Dobson, Alan D. W.
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Lipidomic Analysis Reveals Differences in Bacteroides Species Driven Largely by Plasmalogens, Glycerophosphoinositols and Certain Sphingolipids
err2023-02-28
err12
errOAAI
errRyan, Eileen; Gonzalez Pastor, Belen; Gethings, Lee A.; Clarke, David J.; Joyce, Susan A.
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Identification of BgP, a Cutinase-Like Polyesterase From a Deep-Sea Sponge-Derived Actinobacterium
err2022-04-12
err15
errOAAI
errCarr, Clodagh M.; de Oliveira, Bruno Francesco Rodrigues; Jackson, Stephen A.; Laport, Marinella Silva; Clarke, David J.; Dobson, Alan D. W.
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New Antimicrobial Peptides From Bacteria/Invertebrate Obligate Symbiotic Associations
err2022-03-08
err4
errOAAI
errFodor, Andras; Clarke, David J.; Dillman, Adler R.; Tarasco, Eustachio; Hazir, Selcuk
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In Vitro and In Vivo Assessment of the Potential of Escherichia coli Phages to Treat Infections and Survive Gastric Conditions
err2021-09-03
err4
errOAAI
errKaczorowska, Joanna; Casey, Eoghan; Lugli, Gabriele A.; Ventura, Marco; Clarke, David J.; van Sinderen, Douwe; Mahony, Jennifer
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Fast, Lifetime-Preserving Readout for High-Coherence Quantum Annealers
err2020-11-19
err15
errOAAI
errGrover, Jeffrey A.; Basham, James, I; Marakov, Alexander; Disseler, Steven M.; Hinkey, Robert T.; Khalil, Moe; Stegen, Zachary A.; Chamberlin, Thomas; DeGottardi, Wade; Clarke, David J.; Medford, James R.; Strand, Joel D.; Stoutimore, Micah J. A.; Novikov, Sergey; Ferguson, David G.; Lidar, Daniel; Zick, Kenneth M.; Przybysz, Anthony J.
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Microbial Polyethylene Terephthalate Hydrolases: Current and Future Perspectives
err2020-11-11
err116
errOAAI
errCarr, Clodagh M.; Clarke, David J.; Dobson, Alan D. W.
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Making and Breaking Leupeptin Protease Inhibitors in Pathogenic Gammaproteobacteria
err2020-08-13
err17
PREAI
errLi, Jhe-Hao; Oh, Joonseok; Kienesberger, Sabine; Kim, Nam Yoon; Clarke, David J.; Zechner, Ellen L.; Crawford, Jason M.
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Nigral overexpression of α-synuclein in a rat Parkinson's disease model indicates alterations in the enteric nervous system and the gut microbiome
err2019-10-02
err82
PREAI
errO'Donovan, Sarah M.; Crowley, Erin K.; Brown, Jillian R-M; O'Sullivan, Orla; O'Leary, Olivia F.; Timmons, Suzanne; Nolan, Yvonne M.; Clarke, David J.; Hyland, Niall P.; Joyce, Susan A.; Sullivan, Aideen M.; O'Neill, Cora
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The Glycine Lipids of Bacteroides thetaiotaomicron Are Important for Fitness during Growth In Vivo and In Vitro
err2019-05-15
err28
errOAAI
errLynch, Alli; Tammireddy, Seshu R.; Doherty, Mary K.; Whitfield, Phillip D.; Clarke, David J.
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Microbial Population Changes in Decaying Ascophyllum nodosum Result in Macroalgal-Polysaccharide-Degrading Bacteria with Potential Applicability in Enzyme-Assisted Extraction Technologies
err2019-03-29
err22
errOAAI
errIhua, Maureen W.; Guiheneuf, Freddy; Mohammed, Halimah; Margassery, Lekha M.; Jackson, Stephen A.; Stengel, Dagmar B.; Clarke, David J.; Dobson, Alan D. W.
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Real-Time Synchrotron Small-Angle X-ray Scattering Studies of Collagen Structure during Leather Processing
err2017-12-28
err24
PREAI
errZhang, Yi; Ingham, Bridget; Cheong, Soshan; Ariotto, Nicholas; Tilley, Richard D.; Naffa, Rafea; Holmes, Geoff; Clarke, David J.; Prabakar, Sujay
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The Bacteroidales produce an N-acylated derivative of glycine with both cholesterol-solubilising and hemolytic activity
err2017-10-16
err35
errOAAI
errLynch, Alli; Crowley, Elaine; Casey, Eoghan; Cano, Rafael; Shanahan, Rachel; McGlacken, Ger; Marchesi, Julian R.; Clarke, David J.
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