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Host gene expression in the Nasopharynx can discriminate microbiologically confirmed viral and bacterial lower respiratory tract infection Tillekeratne, L. Gayani; O'grady, Nicholas; Iglesias-Ussel, Maria D.; Anderson, Jack; Brown, Alana; Obale, Armstrong; Nix, Christina; Bodinayake, Champica K.; Nagahawatte, Ajith; Rolfe, Robert; Woodhouse, E. Wilbur; Wijayaratne, Gaya B.; Weerasinghe, Senali; Dilshan, U. H. B. Y.; Gamage, Jayani; Kurukulasooriya, Ruvini; Premamali, Madureka; Jayasinghearachchi, Himali S.; Nicholson, Bradly P.; Ko, Emily R.; Tsalik, Ephraim L.; Mcclain, Micah T.; Myers, Rachel A.; Woods, Christopher W.; Burke, Thomas W. Share Save
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Pathogen class-specific transcriptional responses derived from PBMCs accurately discriminate between fungal, bacterial, and viral infections Steinbrink, Julie M.; Liu, Yiling; Henao, Ricardo; Tsalik, Ephraim L.; Ginsburg, Geoffrey S.; Ramsburg, Elizabeth; Woods, Christopher W.; McClain, Micah T. Share Save
A Rapid Host Response Blood Test for Bacterial/Viral Infection Discrimination Using a Portable Molecular Diagnostic Platform Iglesias-Ussel, Maria D.; O'Grady, Nicholas; Anderson, Jack; Mitsis, Paul G.; Burke, Thomas W.; Henao, Ricardo; Scavetta, Joseph; Camilleri, Clare; Naderi, Sepideh; Carittini, Amanda; Perelman, Max; Myers, Rachel A.; Ginsburg, Geoffrey S.; Ko, Emily R.; Mcclain, Micah T.; van Westrienen, Jesse; Tsalik, Ephraim L.; Tillekeratne, L. Gayani; Woods, Christopher W. Share Save
Host response to influenza infections in human blood: association of influenza severity with host genetics and transcriptomic response Schughart, Klaus; Smith, Amber M.; Tsalik, Ephraim L.; Threlkeld, Stephen C.; Sellers, Subhashini; Fischer, William A.; Schreiber, Jens; Luecke, Eva; Cornberg, Markus; Debarry, Jennifer; Woods, Christopher W.; McClain, Micah T.; Heise, Mark Share Save
Predictive signature of murine and human host response to typical and atypical pneumonia McCravy, Matthew; O'Grady, Nicholas; Khan, Kirin; Betancourt-Quiroz, Marisol; Zaas, Aimee K.; Treece, Amy E.; Yang, Zhonghui; Que, Loretta; Henao, Ricardo; Suchindran, Sunil; Ginsburg, Geoffrey S.; Woods, Christopher W.; McClain, Micah T.; Tsalik, Ephraim L. Share Save
Clinical Utility of Plasma Microbial Cell-Free DNA Sequencing Among Immunocompromised Patients With Pneumonia Madut, Deng B.; Chemaly, Roy F.; Dadwal, Sanjeet S.; Hill, Joshua A.; Lee, Yeon Joo; Haidar, Ghady; Luk, Alfred; Drelick, Alexander; Chin-Hong, Peter, V; Benamu, Esther; Khawaja, Fareed; Nanayakkara, Deepa; Papanicolaou, Genovefa A.; Small, Catherine Butkus; Fung, Monica; Barron, Michelle; Davis, Thomas; Mcclain, Micah T.; Maziarz, Eileen K.; Bedoya, Armando D.; Gilstrap, Daniel L.; Todd, Jamie L.; Barkauskas, Christina E.; Heldman, Madeleine R.; Bigelow, Robert; Leimberger, Jeffrey D.; Tsalik, Ephraim L.; Wolf, Olivia; Mughar, Mona; Lau, Constance; Noll, Nicholas; Hollemon, Desiree; Duttagupta, Radha; Lupu, Daniel S.; Bercovici, Sivan; Perkins, Bradley A.; Blauwkamp, Timothy A.; Fowler, Vance G.; Holland, Thomas L.; Bergin, Stephen P. Share Save
Sepsis endotypes identified by host gene expression across global cohorts Chenoweth, Josh G.; Brandsma, Joost; Striegel, Deborah A.; Genzor, Pavol; Chiyka, Elizabeth; Blair, Paul W.; Krishnan, Subramaniam; Dogbe, Elliot; Boakye, Isaac; Fogel, Gary B.; Tsalik, Ephraim L.; Woods, Christopher W.; Owusu-Ofori, Alex; Oppong, Chris; Oduro, George; Vantha, Te; Letizia, Andrew G.; Beckett, Charmagne G.; Schully, Kevin L.; Clark, Danielle V. Share Save
Implementation of a Prospective Index-Cluster Sampling Strategy for the Detection of Presymptomatic Viral Respiratory Infection in Undergraduate Students Uthappa, Diya M.; McClain, Micah T.; Nicholson, Bradly P.; Park, Lawrence P.; Zhbannikov, Ilya; Suchindran, Sunil; Jimenez, Monica; Constantine, Florica J.; Nichols, Marshall; Jones, Daphne C.; Hudson, Lori L.; Jaggers, L. Brett; Veldman, Timothy; Burke, Thomas W.; Tsalik, Ephraim L.; Ginsburg, Geoffrey S.; Woods, Christopher W. Share Save
Host-response transcriptional biomarkers accurately discriminate bacterial and viral infections of global relevance Ko, Emily R.; Reller, Megan E.; Tillekeratne, L. Gayani; Bodinayake, Champica K.; Miller, Cameron; Burke, Thomas W.; Henao, Ricardo; Mcclain, Micah T.; Suchindran, Sunil; Nicholson, Bradly; Blatt, Adam; Petzold, Elizabeth; Tsalik, Ephraim L.; Nagahawatte, Ajith; Devasiri, Vasantha; Rubach, Matthew P.; Maro, Venance P.; Lwezaula, Bingileki F.; Kodikara-Arachichi, Wasantha; Kurukulasooriya, Ruvini; De Silva, Aruna D.; Clark, Danielle V.; Schully, Kevin L.; Madut, Deng; Dumler, J. Stephen; Kato, Cecilia; Galloway, Renee; Crump, John A.; Ginsburg, Geoffrey S.; Minogue, Timothy D.; Woods, Christopher W. Share Save
Plasma Microbial Cell-Free DNA Sequencing in Immunocompromised Patients With Pneumonia: A Prospective Observational Study Bergin, Stephen P.; Chemaly, Roy F.; Dadwal, Sanjeet S.; Hill, Joshua A.; Lee, Yeon Joo; Haidar, Ghady; Luk, Alfred; Drelick, Alexander; Chin-Hong, Peter, V; Benamu, Esther; Khawaja, Fareed; Nanayakkara, Deepa; Papanicolaou, Genovefa A.; Small, Catherine Butkus; Fung, Monica; Barron, Michelle A.; Davis, Thomas; Mcclain, Micah T.; Maziarz, Eileen K.; Madut, Deng B.; Bedoya, Armando D.; Gilstrap, Daniel L.; Todd, Jamie L.; Barkauskas, Christina E.; Bigelow, Robert; Leimberger, Jeffrey D.; Tsalik, Ephraim L.; Wolf, Olivia; Mughar, Mona; Hollemon, Desiree; Duttagupta, Radha; Lupu, Daniel S.; Bercovici, Sivan; Perkins, Bradley A.; Blauwkamp, Timothy A.; Fowler, Vance G.; Holland, Thomas L. Share Save
Access to COVID-19 testing by individuals with housing insecurity during the early days of the COVID-19 pandemic in the United States: a scoping review Johannesson, Jon M.; Glover II, William A.; Petti, Cathy A.; Veldman, Timothy H.; Tsalik, Ephraim L.; Taylor, Donald H.; Hendren, Stephanie; Neighbors, Coralei E.; Tillekeratne, L. Gayani; Kennedy, Scott W.; Harper, Barrie; Kibbe, Warren A.; Corbie, Giselle; Cohen-Wolkowiez, Michael; Woods, Christopher W.; Lee, Mark J. Share Save
RADx-UP Testing Core: Access to COVID-19 Diagnostics in Community-Engaged Research with Underserved Populations Narayanasamy, Shanti; Veldman, Timothy H.; Lee, Mark J.; Glover II, William A.; Tillekeratne, L. Gayani; Neighbors, Coralei E.; Harper, Barrie; Raghavan, Vidya; Kennedy, Scott W.; Carper, Miranda; Denny, Thomas; Tsalik, Ephraim L.; Reller, Megan E.; Kibbe, Warren A.; Corbie, Giselle; Cohen-Wolkowiez, Michael; Woods, Christopher W.; Petti, Cathy A. Share Save
Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion (vol 12, 11714, 2022) Giroux, Nicholas S.; Ding, Shengli; McClain, Micah T.; Burke, Thomas W.; Petzold, Elizabeth; Chung, Hong A.; Rivera, Grecia O.; Wang, Ergang; Xi, Rui; Bose, Shree; Rotstein, Tomer; Nicholson, Bradly P.; Chen, Tianyi; Henao, Ricardo; Sempowski, Gregory D.; Denny, Thomas N.; De Ussel, Maria Iglesias; Satterwhite, Lisa L.; Ko, Emily R.; Ginsburg, Geoffrey S.; Kraft, Bryan D.; Tsalik, Ephraim L.; Shen, Xiling; Woods, Christopher W. Share Save
Efficacy and safety of azithromycin versus placebo to treat lower respiratory tract infections associated with low procalcitonin: a randomised, placebo-controlled, double-blind, non-inferiority trial Tsalik, Ephraim L.; Rouphael, Nadine G.; Sadikot, Ruxana T.; Rodriguez-Barradas, Maria C.; McClain, Micah; Wilkins, Dana M.; Woods, Christopher W.; Swamy, Geeta K.; Walter, Emmanuel B.; El Sahly, Hana M.; Keitel, Wendy A.; Mulligan, Mark J.; Tuyishimire, Bonifride; Serti, Elisavet; Hamasaki, Toshimitsu; Evans, Scott R.; Ghazaryan, Varduhi; Lee, Marina S.; Lautenbach, Ebbing Share Save
Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease Zhang, Zijun; Sauerwald, Natalie; Cappuccio, Antonio; Ramos, Irene; Nair, Venugopalan D.; Nudelman, German; Zaslavsky, Elena; Ge, Yongchao; Gaitas, Angelo; Ren, Hui; Brockman, Joel; Geis, Jennifer; Ramalingam, Naveen; King, David; McClain, Micah T.; Woods, Christopher W.; Henao, Ricardo; Burke, Thomas W.; Tsalik, Ephraim L.; Goforth, Carl W.; Lizewski, Rhonda A.; Lizewski, Stephen E.; Weir, Dawn L.; Letizia, Andrew G.; Sealfon, Stuart C.; Troyanskaya, Olga G. Share Save
Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature Cappuccio, Antonio; Chawla, Daniel G.; Chen, Xi; Rubenstein, Aliza B.; Cheng, Wan Sze; Mao, Weiguang; Burke, Thomas W.; Tsalik, Ephraim L.; Petzold, Elizabeth; Henao, Ricardo; McClain, Micah T.; Woods, Christopher W.; Chikina, Maria; Troyanskaya, Olga G.; Sealfon, Stuart C.; Kleinstein, Steven H.; Zaslavsky, Elena Share Save
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