Not logged in Transmission of carbapenemase-producing Enterobacter in Ontario, Canada: a retrospective genomic analysis Izydorczyk, Conrad; Lee, Robyn; Mataseje, Laura; Golding, George R.; Edge, Thomas A.; Boyd, Rachel; Braukmann, Tom; Carroll, Amanda; Katz, Kevin; Kozak, Robert; Jamal, Alainna J.; MacFadden, Derek R.; Mazzulli, Tony; Melano, Roberto; Mubareka, Samira; Patel, Samir; Poutanen, Susan M.; Richardson, David; Waglechner, Nicholas; McGeer, Allison Share Save
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Monkeypox Virus Shedding Despite Tecovirimat Treatment in a Cohort in Toronto, Canada Hurst, Jacklyn R.; Addo, Mary; Li, Abby; Khera, Shreya S.; Persaud, Reva; Bertucci, Cassandra; Hummel, Misha; Espinosa, Oscar Javier Pico; Chan, Adrienne K.; Walmsley, Sharon; Mishra, Sharmistha; Tan, Darrell H. S.; Kozak, Robert Share Save
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Monkeypox Virus Transcriptional Profiles and Host Responses in Skin Lesion Swabs Among Individuals With Human Immunodeficiency Virus Hurst, Jacklyn R.; Tan, Darrell H. S.; Li, Abby; Khera, Shreya S.; Persaud, Reva; Chan, Adrienne; Walmsley, Sharon; Hummel, Misha; Bertucci, Cassandra; Espinosa, Oscar J. Pico; Mishra, Sharmistha; Fraser, Russell S.; Kozak, Robert Share Save
Functional and Structural Characterization of Treatment-Emergent Nirmatrelvir Resistance Mutations at Low Frequencies in the Main Protease (Mpro) Reveals a Unique Evolutionary Route for SARS-CoV-2 to Gain Resistance Deschenes, Natalie M.; Perez-Vargas, Jimena; Zhong, Zoe; Thomas, Merrilee; Kenward, Calem; Mosimann, Wesley A.; Worrall, Liam J.; Waglechner, Nicholas; Li, Angel XinLiu; Maguire, Finlay; Aftanas, Patryk; Smith, Jason R.; Lim, Jared; Young, Robert N.; Cherkasov, Artem; Farooqi, Lubna; Moinuddin, Adnan; Siddiqi, Lina; Malik, Imaan; Lefebvre, Maxime; Paetzel, Mark; Strynadka, Natalie C. J.; Jean, Francois; McGeer, Allison; Kozak, Robert A. Share Save
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Vaccination against SARS-CoV-2 provides low-level cross-protection against common cold coronaviruses in mouse and non-human primate animal models Naghibosadat, Maedeh; Babuadze, George Giorgi; Pei, Yanlong; Hurst, Jacklyn; Salvant, Elsa; Gaete, Kayla; Biondi, Mia; Moloo, Badru; Goldstein, Alyssa; Avery, Stacey; Ma, Kathleen; Pietraszek, Anna; Wootton, Sarah K.; Alhaboub, Assad; Martin, Benjamin; Mubareka, Samira; Corredor, Juan; Sultana, Azmiri; Adeekoa, Adebayo; Budylowski, Patrick; Ostrowski, Mario; Chao, Jesse; Nagy, Eva; Kozak, Robert Share Save
Comparison of pharyngeal and invasive isolates of Streptococcus pyogenes by whole-genome sequencing in Toronto, Canada Zeppa, Joseph J.; Avery, Ellen G.; Aftanas, Patryk; Choi, Erin; Uleckas, Simone; Patel, Prachi; Waglechner, Nicholas; Jimenez, Hubert; Vermeiren, Christie; Katz, Kevin; Li, Xena X.; Maguire, Finlay; Kozak, Robert Share Save
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Identification of patient demographic, clinical, and SARS-CoV-2 genomic factors associated with severe COVID-19 using supervised machine learning: a retrospective multicenter study Nirmalarajah, Kuganya; Aftanas, Patryk; Barati, Shiva; Chien, Emily; Crowl, Gloria; Faheem, Amna; Farooqi, Lubna; Jamal, Alainna J.; Khan, Saman; Kotwa, Jonathon D.; Li, Angel X.; Mozafarihashjin, Mohammad; Nasir, Jalees A.; Shigayeva, Altynay; Yim, Winfield; Yip, Lily; Zhong, Xi Zoe; Katz, Kevin; Kozak, Robert; Mcarthur, Andrew G.; Daneman, Nick; Maguire, Finlay; Mcgeer, Allison J.; Duvvuri, Venkata R.; Mubareka, Samira Share Save
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SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes Nasir, Jalees A.; Maguire, Finlay; Smith, Kendrick M.; Panousis, Emily M.; Baker, Sheridan J. C.; Aftanas, Patryk; Raphenya, Amogelang R.; Alcock, Brian P.; Maan, Hassaan; Knox, Natalie C.; Banerjee, Arinjay; Mossman, Karen; Wang, Bo; Simpson, Jared T.; Kozak, Robert A.; Mubareka, Samira; Mcarthur, Andrew G. Share Save
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Differential Gene Expression in the Upper Respiratory Tract following Acute COVID-19 Infection in Ambulatory Patients That Develop Long COVID Biondi, Mia J.; Addo, Mary; Zahoor, Muhammad Atif; Salvant, Elsa; Yip, Paul; Barber, Bethany; Smookler, David; Wasif, Sumaiyah; Gaete, Kayla; Kandel, Christopher; Feld, Jordan J.; Tsui, Hubert; Kozak, Robert A. Share Save
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