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Ruth Dannenfelser

rice university

17H-index
51Paper Count
3.7KCitation Count
Published Papers 13
Publication Date
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Ontology-aware DNA methylation classification with a curated atlas of human tissues and cell types
err2026-03-12
err0
errOAAI
errMirae Kim; Ruth Dannenfelser; Yufei Cui; Genevera Allen; Vicky Yao
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Interpretable phenotype decoding from multicondition sequencing data with ALPINE
err2025-12-01
err1
PREAI
errLee, Wei-Hao; Li, Lechuan; Dannenfelser, Ruth; Yao, Vicky
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A best-match approach for gene set analyses in embedding spaces
err2024-09-04
err0
PREAI
errLi, Lechuan; Dannenfelser, Ruth; Cruz, Charlie; Yao, Vicky
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Current progress and open challenges for applying deep learning across the biosciences
err2022-04-01
err138
errOAAI
errSapoval, Nicolae; Aghazadeh, Amirali; Nute, Michael G.; Antunes, Dinler A.; Balaji, Advait; Baraniuk, Richard; Barberan, C. J.; Dannenfelser, Ruth; Dun, Chen; Edrisi, Mohammadamin; Elworth, R. A. Leo; Kille, Bryce; Kyrillidis, Anastasios; Nakhleh, Luay; Wolfe, Cameron R.; Yan, Zhi; Yao, Vicky; Treangen, Todd J.
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SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma
err2021-04-28
err305
errOAAI
errChoe, Joseph H.; Watchmaker, Payal B.; Simic, Milos S.; Gilbert, Ryan D.; Li, Aileen W.; Krasnow, Nira A.; Downey, Kira M.; Yu, Wei; Carrera, Diego A.; Celli, Anna; Cho, Juhyun; Briones, Jessica D.; Duecker, Jason M.; Goretsky, Yitzhar E.; Dannenfelser, Ruth; Cardarelli, Lia; Troyanskaya, Olga; Sidhu, Sachdev S.; Roybal, Kole T.; Okada, Hideho; Lim, Wendell A.
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Discriminatory Power of Combinatorial Antigen Recognition in Cancer T Cell Therapies
err2020-09-01
err61
errOAAI
errDannenfelser, Ruth; Allen, Gregory M.; VanderSluis, Benjamin; Koegel, Ashley K.; Levinson, Sarah; Stark, Sierra R.; Yao, Vicky; Tadych, Alicja; Troyanskaya, Olga G.; Lim, Wendell A.
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Selective Neuronal Vulnerability in Alzheimer's Disease: A Network-Based Analysis
errNEURON
IF15
err2020-09-01
err103
errOAAI
errRoussarie, Jean-Pierre; Yao, Vicky; Rodriguez-Rodriguez, Patricia; Oughtred, Rose; Rust, Jennifer; Plautz, Zakary; Kasturia, Shirin; Albornoz, Christian; Wang, Wei; Schmidt, Eric F.; Dannenfelser, Ruth; Tadych, Alicja; Brichta, Lars; Barnea-Cramer, Alona; Heintz, Nathaniel; Hof, Patrick R.; Heiman, Myriam; Dolinski, Kara; Flajolet, Marc; Troyanskaya, Olga G.; Greengard, Paul
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Serum cytokine levels in breast cancer patients during neoadjuvant treatment with bevacizumab
err2018-08-06
err20
errOAAI
errJabeen, Shakila; Zucknick, Manuela; Nome, Marianne; Dannenfelser, Ruth; Fleischer, Thomas; Kumar, Surendra; Luders, Torben; Gythfeldt, Hedda von der Lippe; Troyanskaya, Olga; Kyte, Jon Amund; Borresen-Dale, Anne-Lise; Naume, Bjorn; Tekpli, Xavier; Engebraaten, Olav; Kristensen, Vessela
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Highly conserved tissue immune signatures are co-opted in cancer
err2017-05-01
err0
errOAAI
errSuarez-Farinas, M.; Devi, K.; Dannenfelser, R.; Izar, B.; Prakadan, S.; Zhu, Q.; Yoon, C.; Regev, A.; Garraway, L.; Shalek, A.; Troyansakaya, O.; Anandasabapathy, N.
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Lymphocyte Invasion in IC10/Basal-Like Breast Tumors Is Associated with Wild-Type TP53
err2015-03-18
err57
errOAAI
errQuigley, David; Silwal-Pandit, Laxmi; Dannenfelser, Ruth; Langerod, Anita; Vollan, Hans Kristian Moen; Vaske, Charles; Siegel, Josie Ursini; Troyanskaya, Olga; Chin, Suet-Feung; Caldas, Carlos; Balmain, Allan; Borresen-Dale, Anne-Lise; Kristensen, Vessela
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Lymphocyte invasion of basal breast tumors is associated with wild-type p53
err2015-01-12
err0
PREAI
errQuigley, David A.; Vaske, Charlie; Silwa-Pandit, Laxmi; Dannenfelser, Ruth; Langerod, Anita; Vollan, Hans Kristian M.; Troyanskaya, Olga; Chin, Suet-Feung; Caldas, Carlos; Balmain, Allan; Borresen-Dale, Anne-Lise; Kristensen, Vessela
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ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells
err2013-06-21
err79
errOAAI
errXu, Huilei; Baroukh, Caroline; Dannenfelser, Ruth; Chen, Edward Y.; Tan, Christopher M.; Kou, Yan; Kim, Yujin E.; Lemischka, Ihor R.; Ma'ayan, Avi
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