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Matthias Merkenschlager

Imperial College London

66H-index
259Paper Count
1.9WCitation Count
Published Papers 107
Publication Date
Uncovering the regulatory landscape of early human B cell lymphopoiesis and its implications in the pathogenesis of B-ALL
err2025-10-10
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PREAI
errNúria Planell; Xabier Martínez-de-Morentin; Daniel Mouzo; David Lara-Astiaso; Amaia Vilas-Zornoza; Patxi San Martín-Uriz; Diego Alignani; Bruno Paiva; Alberto Maillo; Aleksandra Kurowska; Nerea Berastegui; Paula Garcia-Olloqui; Arantxa Urdangarin; Peri Noori; Asier Ortega-Legarreta; Mikel Hernaez; Vincenzo Lagani; Narsis Kiani; Matthias Merkenschlager; Teresa Ezponda; José I. Martín-Subero; Ricardo N. Ramírez; Jesper Tegner; Felipe Prosper; David Gomez-Cabrero
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PBK/TOPK mediates Ikaros, Aiolos and CTCF displacement from mitotic chromosomes and alters chromatin accessibility at selected C2H2-zinc finger protein binding sites
err2025-09-23
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errOAAI
errAndrew Dimond; Do Hyeon Gim; Elizabeth Ing-Simmons; Chad Whilding; Holger B. Kramer; Dounia Djeghloul; Alex Montoya; Bhavik Patel; Sherry Cheriyamkunnel; Karen E. Brown; Pavel V. Shliaha; Juan M. Vaquerizas; Matthias Merkenschlager; Amanda G. Fisher
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X-linked competition - implications for human development and disease
err2025-05-12
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PREAI
errBoone, Philip M.; Buenaventura, Teresa; King, James W. D.; Merkenschlager, Matthias
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Three- dimensional chromatin mapping of sensory neurons reveals that promoter-enhancer looping is required for axonal regeneration
err2024-09-10
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errOAAI
errPalmisano, Ilaria; Liu, Tong; Gao, Wei; Zhou, Luming; Merkenschlager, Matthias; Mueller, Franziska; Chadwick, Jessica; Rivalta, Rebecca Toscano; Kong, Guiping; King, James W. D.; Jibury, Ediem Al -; Yan, Yuyang; Carlino, Alessandro; Collison, Bryce; De Vitis, Eleonora; Gongala, Sree; De Virgiliis, Francesco; Wang, Zheng; Di Giovanni, Simone
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Competition shapes the landscape of X-chromosome-linked genetic diversity
err2024-07-26
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errOAAI
errBuenaventura, Teresa; Bagci, Hakan; Patrascan, Ilinca; Graham, Joshua J.; Hipwell, Kelsey D.; Oldenkamp, Roel; King, James W. D.; Urtasun, Jesus; Young, George; Mouzo, Daniel; Gomez-Cabrero, David; Rowland, Benjamin D.; Panne, Daniel; Fisher, Amanda G.; Merkenschlager, Matthias
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Protein restriction during pregnancy alters Cdkn1c silencing, dopamine circuitry and offspring behaviour without changing expression of key neuronal marker genes
err2024-04-12
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errOAAI
errProdani, Chiara; Irvine, Elaine E.; Sardini, Alessandro; Gleneadie, Hannah J.; Dimond, Andrew; Van de Pette, Mathew; John, Rosalind; Kokkinou, Michelle; Howes, Oliver; Withers, Dominic J.; Ungless, Mark A.; Merkenschlager, Matthias; Fisher, Amanda G.
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Bioluminescence imaging of Cyp1a1-luciferase reporter mice demonstrates prolonged activation of the aryl hydrocarbon receptor in the lung
err2024-04-10
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errOAAI
errVeland, Nicolas; Gleneadie, Hannah J.; Brown, Karen E.; Sardini, Alessandro; Pombo, Joaquim; Dimond, Andrew; Burns, Vanessa; Sarkisyan, Karen; Schiering, Chris; Webster, Zoe; Merkenschlager, Matthias; Fisher, Amanda G.
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A deep learning method for replicate-based analysis of chromosome conformation contacts using Siamese neural networks
err2023-08-17
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errOAAI
errAl-jibury, Ediem; King, James W. D.; Guo, Ya; Lenhard, Boris; Fisher, Amanda G.; Merkenschlager, Matthias; Rueckert, Daniel
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Drug-induced loss of imprinting revealed using bioluminescent reporters of Cdkn1c
err2023-04-06
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errOAAI
errDimond, Andrew; Van de Pette, Mathew; Taylor-Bateman, Victoria; Brown, Karen; Sardini, Alessandro; Whilding, Chad; Feytout, Amelie; Prinjha, Rab K.; Merkenschlager, Matthias; Fisher, Amanda G.
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Endogenous bioluminescent reporters reveal a sustained increase in utrophin gene expression upon EZH2 and ERK1/2 inhibition
err2023-03-25
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errOAAI
errGleneadie, Hannah J. J.; Fernandez-Ruiz, Beatriz; Sardini, Alessandro; Van de Pette, Mathew; Dimond, Andrew; Prinjha, Rab K. K.; McGinty, James; French, Paul M. W.; Bagci, Hakan; Merkenschlager, Matthias; Fisher, Amanda G. G.
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A Conserved Insulator That Recruits CTCF and Cohesin Exists between the Closely Related but Divergently Regulated Interleukin-3 and Granulocyte-Macrophage Colony-Stimulating Factor Genes
err2023-03-21
err30
errOAAI
errBowers, Sarion R.; Mirabella, Fabio; Calero-Nieto, Fernando J.; Valeaux, Stephanie; Hadjur, Suzana; Baxter, Euan W.; Merkenschlager, Matthias; Cockerill, Peter N.
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Loss of H3K9 trimethylation alters chromosome compaction and transcription factor retention during mitosis
err2023-03-20
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errOAAI
errDjeghloul, Dounia; Dimond, Andrew; Cheriyamkunnel, Sherry; Kramer, Holger; Patel, Bhavik; Brown, Karen; Montoya, Alex; Whilding, Chad; Wang, Yi-Fang; Futschik, Matthias E.; Veland, Nicolas; Montavon, Thomas; Jenuwein, Thomas; Merkenschlager, Matthias; Fisher, Amanda G.
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Avrion Mitchison (1928-2022)
err2023-03-06
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errOAAI
errFisher, Amanda G. G.; Merkenschlager, Matthias
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Chromatin jets define the properties of cohesin-driven in vivo loop extrusion
err2022-10-01
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errOAAI
errGuo, Ya; Al-Jibury, Ediem; Garcia-Millan, Rosalba; Ntagiantas, Konstantinos; King, James W. D.; Nash, Alex J.; Galjart, Niels; Lenhard, Boris; Rueckert, Daniel; Fisher, Amanda G.; Pruessner, Gunnar; Merkenschlager, Matthias
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Cohesin couples transcriptional bursting probabilities of inducible enhancers and promoters
err2022-07-27
err14
errOAAI
errRobles-Rebollo, Irene; Cuartero, Sergi; Canellas-Socias, Adria; Wells, Sarah; Karimi, Mohammad M.; Mereu, Elisabetta; Chivu, Alexandra G.; Heyn, Holger; Whilding, Chad; Dormann, Dirk; Marguerat, Samuel; Rioja, Inmaculada; Prinjha, Rab K.; Stumpf, Michael P. H.; Fisher, Amanda G.; Merkenschlager, Matthias
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Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformation
err2022-06-28
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errOAAI
errDsouza, Kevin B.; Maslova, Alexandra; Al-Jibury, Ediem; Merkenschlager, Matthias; Bhargava, Vijay K.; Libbrecht, Maxwell W.
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Epigenetic changes induced by in utero dietary challenge result in phenotypic variability in successive generations of mice
err2022-05-05
err13
errOAAI
errVan de Pette, Mathew; Galvao, Antonio; Millership, Steven J.; To, Wilson; Dimond, Andrew; Prodani, Chiara; McNamara, Grainne; Bruno, Ludovica; Sardini, Alessandro; Webster, Zoe; McGinty, James; French, Paul; Uren, Anthony G.; Castillo-Fernandez, Juan; John, Rosalind M.; Ferguson-Smith, Anne C.; Merkenschlager, Matthias; Kelsey, Gavin; Fisher, Amanda G.; Watkinson, William
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Cohesin-dependence of neuronal gene expression relates to chromatin loop length
err2022-04-26
err58
errOAAI
errCalderon, Lesly; Weiss, Felix D.; Beagan, Jonathan A.; Oliveira, Marta S.; Georgieva, Radina; Wang, Yi-Fang; Carroll, Thomas S.; Dharmalingam, Gopuraja; Gong, Wanfeng; Tossell, Kyoko; de Paola, Vincenzo; Whilding, Chad; Ungless, Mark A.; Fisher, Amanda G.; Phillips-Cremins, Jennifer E.; Merkenschlager, Matthias
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Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin
err2021-05-18
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errOAAI
errWeiss, Felix D.; Calderon, Lesly; Wang, Yi-Fang; Georgieva, Radina; Guo, Ya; Cvetesic, Nevena; Kaur, Maninder; Dharmalingam, Gopuraja; Krantz, Ian D.; Lenhard, Boris; Fisher, Amanda G.; Merkenschlager, Matthias
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The order and logic of CD4 versus CD8 lineage choice and differentiation in mouse thymus
err2021-01-04
err28
errOAAI
errKarimi, Mohammad M.; Guo, Ya; Cui, Xiaokai; Pallikonda, Husayn A.; Horkova, Veronika; Wang, Yi-Fang; Gil, Sara Ruiz; Rodriguez-Esteban, Gustavo; Robles-Rebollo, Irene; Bruno, Ludovica; Georgieva, Radina; Patel, Bhavik; Elliott, James; Dore, Marian H.; Dauphars, Danielle; Krangel, Michael S.; Lenhard, Boris; Heyn, Holger; Fisher, Amanda G.; Stepanek, Ondrej; Merkenschlager, Matthias
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