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Stein Aerts

csic - andalusian center for developmental biology (cabd)

64H-index
289Paper Count
2.7WCitation Count
Published Papers 86
Publication Date
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CREsted: modeling genomic and synthetic cell-type-specific enhancers across tissues and species
errNature Methods
IF32.1
err2026-04-02
err0
errOAAI
errNiklas Kempynck; Seppe De Winter; Casper H. Blaauw; Vasileios Konstantakos; Eren Can Ekşi; Sam Dieltiens; Darina Abaffyová; Valérie Bercier; Ibrahim I. Taskiran; Gert Hulselmans; Katina Spanier; Valerie Christiaens; Ludo Van Den Bosch; Lukas Mahieu; Stein Aerts
errShare
errSave
Expanding the fly eye gene regulatory network: From Drosophila to the hoverfly Episyrphus balteatus
errPLoS Genetics
IF3.7
err2026-02-01
err0
PREAI
errNavarro, Tomas; Torres, Jesus; Saez-Moreno, Reinaldo; Guerrero, Genoveva; Almudi, Isabel; Iannini, Antonella; Figueras, Javier; Wotton, Karl; Aerts, Stein; Casares, Fernando
errShare
errSave
Cross-species cellular mapping and humanization of Fcγ receptors to advance antibody modeling
errScience Immunology
IF16.3
err2026-01-30
err0
PREAI
errKarel F. A. Van Damme; Dorine Sichien; Katrien Van der Borght; Justine Van Moorleghem; Sofie Van Gassen; Joseph Jorssen; Seppe De Winter; Elisabeth De Leeuw; Caihong Wang; Qingqing Chai; Anna Brotcke Zumsteg; Michael A. Schmid; Victor Bosteels; Pieter De Bleser; Manon Vanheerswynghels; Sofie De Prijck; Anna Bujko; Clint De Nolf; Martijn J. Schuijs; Bram Van Den Eeckhout; Ilse Rogiers; Robin Browaeys; Flore Thielemans; Katrien Quintelier; Jinke D’Hont; Tino Hochepied; Patricia Isnard Petit; Séverine Augier; Rachel Courtois; Stijn Verwaerde; Stijn Vanhee; Sjoerd Schetters; Charlotte L. Scott; Stein Aerts; Yvan Saeys; Alan J. Korman; Fabio Benigni; Davide Corti; Sophie Janssens; Niels Vandamme; Antonio P. Baptista; Christophe Desmet; Dirk Elewaut; Hamida Hammad; Ariane Morel; Eric Vivier; Fabiane Sônego; Kader Thiam; Sofie Voet; Bianca Balbino; Bart N. Lambrecht
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errSave
The evolution of gene regulation in mammalian cerebellum development
errScience
IF45.8
err2026-01-29
err0
PREAI
errIoannis Sarropoulos; Mari Sepp; Tetsuya Yamada; Philipp S. L. Schäfer; Nils Trost; Julia Schmidt; Céline Schneider; Charis Drummer; Sophie Mißbach; Ibrahim I. Taskiran; Nikolai Hecker; Carmen Bravo González-Blas; Robert Frömel; Piyush Joshi; Evgeny Leushkin; Frederik Arnskötter; Kevin Leiss; Konstantin Okonechnikov; Steven Lisgo; Miklós Palkovits; Svante Pääbo; Margarida Cardoso-Moreira; Lena M. Kutscher; Rüdiger Behr; Stefan M. Pfister; Stein Aerts; Henrik Kaessmann
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errSave
Evaluating single-cell ATAC-seq atlasing technologies using sequence-to-function modeling
errNature Communications
IF15.7
err2026-01-22
err0
errOAAI
errHannah Dickmänken; Marta Wojno; Lukas Mahieu; Koen Theunis; Eren Can Ekşi; Valerie Christiaens; Niklas Kempynck; Florian V. De Rop; Natalie Roels; Katina I. Spanier; Roel Vandepoel; Gert Hulselmans; Suresh Poovathingal; Stein Aerts
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errSave
Axonal Eif5a hypusination controls local translation and mitigates defects in FUS-ALS
errNature Neuroscience
IF20
err2025-12-22
err0
errOAAI
errDiana Piol; Bilal Khalil; Tessa Robberechts; Theo Killian; Maria Georgopoulou; Gabriele Partel; David Wouters; Nikolai Hecker; Paraskevi Tziortzouda; Yana Verresen; Nikky Corthout; Sam Kint; Katy Vandereyken; Philip Van Damme; Thierry Voet; Kristofer Davie; Suresh Poovathingal; Ludo Van Den Bosch; Stein Aerts; Alejandro Sifrim; Sandrine Da Cruz
errShare
errSave
Decoding cnidarian cell type gene regulation
errNature Ecology & Evolution
IF14.5
err2025-12-22
err0
PREAI
errAnamaria Elek; Marta Iglesias; Lukas Mahieu; Grygoriy Zolotarov; Xavier Grau-Bové; Stein Aerts; Arnau Sebé-Pedrós
errShare
errSave
Single-cell mapping of alternative splicing linked to checkpoint immunotherapy response
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-26
err0
PREAI
errXiong, Jieyi; Bricard, Orian; Arijs, Ingrid; Demeulemeester, Jonas; Gu, Chen; Thienpont, Bernard; Daaboul, Danie; Bassez, Ayse; Bechter, Oliver; Pozniak, Joanna; Vos, Hanne; Nevelsteen, Ines; Torfs, Sofie; Santos, Sara Aibar; Lan, Qing; Hou, Yong; Van oudenhove, Lore; Boons, Gitta; Qian, Junbin; Aerts, Stein; Smeets, Ann; Marine, Jean-Christophe; Lambrechts, Diether
errShare
errSave
A dynamic gene regulatory code drives synaptic development of hippocampal granule cells
errScience Advances
IF12.5
err2025-10-22
err0
PREAI
errBlanca Lorente-Echeverría; Danie Daaboul; Jeroen Vandensteen; Gabriele Marcassa; Willem Naert; Joris Vandenbempt; Elke Leysen; Malou Reverendo; Ine Vlaeminck; Lise Vervloessem; Jochen Lamote; Suresh Poovathingal; Kristofer Davie; Keimpe Wierda; Dan Dascenco; Stein Aerts; Joris de Wit
errShare
errSave
The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution
errNature
IF48.5
err2025-09-24
err0
PREAI
errArnau Sebé-Pedrós; Amos Tanay; Mara K. N. Lawniczak; Detlev Arendt; Stein Aerts; John Archibald; Maria Ina Arnone; Mark Blaxter; Phillip Cleves; Susana M. Coelho; Mafalda Dias; Casey Dunn; Anamaria Elek; Jonathan Frazer; Toni Gabaldón; Jesse Gillis; Xavier Grau-Bové; Roderic Guigó; Oliver Hobert; Jaime Huerta-Cepas; Manuel Irimia; Allon Klein; Harris Lewin; Christopher J. Lowe; Heather Marlow; Jacob M. Musser; László G. Nagy; Sebastián R. Najle; Lior Pachter; Sadye Paez; Irene Papatheodorou; Michael J. Passalacqua; Nikolaus Rajewsky; Seung Y. Rhee; Thomas A. Richards; Tatjana Sauka-Spengler; Lauren M. Saunders; Eve Seuntjens; Jordi Solana; Yuyao Song; Ulrich Technau; Bo Wang
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errSave
Nova-ST: Nano-patterned ultra-dense platform for spatial transcriptomics
errCELL REPORTS METHODS
IF4.5
err2024-08-01
err3
errOAAI
errPoovathingal, Suresh; Davie, Kristofer; Borm, Lars E.; Vandepoel, Roel; Poulvellarie, Nicolas; Verfaillie, Annelien; Corthout, Nikky; Aerts, Stein
errShare
errSave
p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity (vol 8, pg 861, 2016)
errNATURE MEDICINE
IF50
err2024-02-08
err0
errOAAI
errAdriaens, Carmen; Standaert, Laura; Barra, Jasmine; Latil, Mathilde; Verfaillie, Annelien; Kalev, Peter; Boeckx, Bram; Wijnhoven, Paul. W. G.; Radaelli, Enrico; Vermi, William; Leucci, Eleonora; Lapouge, Gaelle; Beck, Benjamin; van den Oord, Joost; Nakagawa, Shinichi; Hirose, Tetsuro; Sablina, Anna. A.; Lambrechts, Diether; Aerts, Stein; Blanpain, Cedric; Marine, Jean-Christophe
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errSave
Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation
errNATURE CELL BIOLOGY
IF19.1
err2024-01-05
err5
errOAAI
errBravo Gonzalez-Blas, Carmen; Matetovici, Irina; Hillen, Hanne; Taskiran, Ibrahim Ihsan; Vandepoel, Roel; Christiaens, Valerie; Sansores-Garcia, Leticia; Verboven, Elisabeth; Hulselmans, Gert; Poovathingal, Suresh; Demeulemeester, Jonas; Psatha, Nikoleta; Mauduit, David; Halder, Georg; Aerts, Stein
errShare
errSave
Systematic benchmarking of single-cell ATAC-sequencing protocols
errNATURE BIOTECHNOLOGY
IF41.7
err2023-08-03
err13
errOAAI
errDe Rop, Florian V.; Hulselmans, Gert; Flerin, Chris; Soler-Vila, Paula; Rafels, Albert; Christiaens, Valerie; Gonzalez-Blas, Carmen Bravo; Marchese, Domenica; Caratu, Ginevra; Poovathingal, Suresh; Rozenblatt-Rosen, Orit; Slyper, Michael; Luo, Wendy; Muus, Christoph; Duarte, Fabiana; Shrestha, Rojesh; Bagdatli, S. Tansu; Corces, M. Ryan; Mamanova, Lira; Knights, Andrew; Meyer, Kerstin B.; Mulqueen, Ryan; Taherinasab, Akram; Maschmeyer, Patrick; Pezoldt, Jörn; Lambert, Camille Lucie Germaine; Iglesias, Marta; Najle, Sebastian R.; Dossani, Zain Y.; Martelotto, Luciano G.; Burkett, Zach; Lebofsky, Ronald; Martin-Subero, Jose Ignacio; Pillai, Satish; Sebe-Pedros, Arnau; Deplancke, Bart; Teichmann, Sarah A.; Ludwig, Leif S.; Braun, Theodore P.; Adey, Andrew C.; Greenleaf, William J.; Buenrostro, Jason D.; Regev, Aviv; Aerts, Stein; Heyn, Holger
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errSave
SCENIC plus : single-cell multiomic inference of enhancers and gene regulatory networks
errNATURE METHODS
IF32.1
err2023-07-13
err23
errOAAI
errGonzalez-Blas, Carmen Bravo; De Winter, Seppe; Hulselmans, Gert; Hecker, Nikolai; Matetovici, Irina; Christiaens, Valerie; Poovathingal, Suresh; Wouters, Jasper; Aibar, Sara; Aerts, Stein
errShare
errSave
Shared enhancer gene regulatory networks between wound and oncogenic programs
errELIFE
IF0
err2023-05-03
err7
errOAAI
errFloc'hlay, Swann; Balaji, Ramya; Stankovic, Dimitrije; Christiaens, Valerie M.; Gonzalez-Blas, Carmen Bravo; De Winter, Seppe; Hulselmans, Gert J.; De Waegeneer, Maxime; Quan, Xiaojiang; Koldere, Duygu; Atkins, Mardelle; Halder, Georg; Uhlirova, Mirka; Classen, Anne-Kathrin; Aerts, Stein
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errSave
Neuronal identity defines a-synuclein and tau toxicity
errNEURON
IF15
err2023-05-01
err17
errOAAI
errPraschberger, Roman; Kuenen, Sabine; Schoovaerts, Nils; Kaempf, Natalie; Singh, Jeevanjot; Janssens, Jasper; Swerts, Jef; Nachman, Eliana; Calatayud, Carles; Aerts, Stein; Poovathingal, Suresh; Verstreken, Patrik
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errSave
Emerging questions in transcriptional regulation
errCELL SYSTEMS
IF7.7
err2023-04-01
err2
PREAI
errNora, Elphege P.; Aerts, Stein; Wittkopp, Patricia J.; Bussemaker, Harmen J.; Bulyk, Martha; Sinha, Saurabh; Zeitlinger, Julia; Crocker, Justin; Bass, Juan Ignacio Fuxman
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errSave
Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation
errCELLS
IF5.2
err2023-03-21
err0
errOAAI
errNaus, Evelyne; Derweduwe, Marleen; Lampi, Youlia; Claeys, Annelies; Pauwels, Jarne; Langenberg, Tobias; Claes, Filip; Xu, Jie; Haemels, Veerle; Atak, Zeynep Kalender; van der Kant, Rob; Van Durme, Joost; De Baets, Greet; Ligon, Keith L.; Fiers, Mark; Gevaert, Kris; Aerts, Stein; Rousseau, Frederic; Schymkowitz, Joost; De Smet, Frederik
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errSave
Cell type diversity in a developing octopus brain
errNATURE COMMUNICATIONS
IF15.7
err2022-11-30
err29
errOAAI
errStyfhals, Ruth; Zolotarov, Grygoriy; Hulselmans, Gert; Spanier, Katina I.; Poovathingal, Suresh; Elagoz, Ali M.; De Winter, Seppe; Deryckere, Astrid; Rajewsky, Nikolaus; Ponte, Giovanna; Fiorito, Graziano; Aerts, Stein; Seuntjens, Eve
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Aviv Regev
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Peter Carmeliet
H-index: 192 · Papers: 1.4K
S
Steven J.M. Jones
H-index: 189 · Papers: 1.3K
S
Svante Pääbo
H-index: 160 · Papers: 470
S
Stefan M. Pfister
H-index: 159 · Papers: 2.1K
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