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Adam P. Arkin

Lawrence Berkeley National Laboratory
H-index:104
Citation Count:7.6万
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Genome-wide mapping of genetic suppression events in Streptococcus pneumoniae

肺炎链球菌中全基因组遗传抑制事件的图谱绘制

Nature Communications
IF15.7
2026-10-220
OAAI
Clement Jun Wei Ng; Justin J. Zik; Yifan Li; Morgan Price; Jia-Hui Chen; Xueli Guan; Adam P. Arkin; Adam M. Deutschbauer; Lok-To Sham
Phylogeny-agnostic strain-level prediction of phage–host interactions from genomes using machine learning

基于机器学习的无系统发育依赖的噬菌体-宿主相互作用基因组菌株级预测

Nature Microbiology
IF19.4
2026-09-290
OAAI
Avery J. C. Noonan; Lucas Moriniere; Edwin O. Rivera-López; Krish Patel; Melina Pena; Madeline Svab; Alexey Kazakov; Adam Deutschbauer; Edward G. Dudley; Vivek K. Mutalik; Adam P. Arkin
Advancing FAIR data towards comparable, organized, predictive AI-ready data for community validation

推动FAIR数据向可比、组织化、可预测的AI就绪数据发展，以供社区验证

Communications Biology
IF5.1
2026-07-180
OAAI
Elisha M. Wood-Charlson; Wolmar N. Åkerström; Lindsey Anderson; Mikayla A. Borton; Stephen K. Burley; Neil Byers; Ishwar Chandramouliswaran; Sylvain V. Costes; Paramvir S. Dehal; Mitchel Doktycz; Emiley Eloe-Fadrosh; Christopher Henry; Kjiersten Fagnan; Oliver Fiehn; Mahantesh Halappanavar; Bonnie Hurwitz; Marcin P. Joachimiak; Sean Jungbluth; Julia Koblitz; Gazi Mahmud; Lee Ann McCue; Thomas O. Metz; Nigel Mouncey; Christopher J. Mungall; Tiffanie M. Nelson; Valerie Skye; Amanda M. Saravia-Butler; V. Ratna Saripalli; Susannah G. Tringe; Tim Van Den Bossche; Adam P. Arkin
Dual transposon sequencing profiles the genetic interaction landscape in bacteria

双转座子测序绘制细菌中的遗传互作景观

Science
IF45.8
2025-09-250
PRE
Justin J. Zik; Morgan N. Price; Keisha Hanifa Alma Mayra; Audrey A. Santoso; Adam P. Arkin; Adam M. Deutschbauer; Lok-To Sham
Bridging the gap: pathway programs for inclusion and persistence in microbiology

弥合差距：微生物学领域的包容性与持续发展路径计划

TRENDS IN MICROBIOLOGY
IF14.9
2025-02-010
OAAI
Anand, Archana; Arkin, Adam; Dukes, Faith; Mageeney, Catherine; Mukundan, Harshini; Mutalik, Vivek
Emergence and disruption of cooperativity in a denitrifying microbial community

反硝化微生物群落中协同作用的涌现与破坏

ISME JOURNAL
IF10
2025-01-011
OAAI
Carr, Alex, V; Otwell, Anne E.; Hunt, Kristopher A.; Chen, Yan; Wilson, James; Faria, Jose P.; Liu, Filipe; Edirisinghe, Janaka N.; Valenzuela, Jacob J.; Turkarslan, Serdar; Lui, Lauren M.; Nielsen, Torben N.; Arkin, Adam P.; Henry, Christopher S.; Petzold, Christopher J.; Stahl, David A.; Baliga, Nitin S.
Acetaminophen production in the edible, filamentous cyanobacterium Arthrospira platensis

食用丝状蓝细菌的对乙酰氨基酚生产

BIOTECHNOLOGY AND BIOENGINEERING
IF3.6
2024-10-111
OA
Hilzinger, Jacob M.; Friedline, Skyler; Sivanandan, Divya; Cheng, Ya-Fang; Yamazaki, Shunsuke; Clark, Douglas S.; Skerker, Jeffrey M.; Arkin, Adam P.
High-throughput protein characterization by complementation using DNA barcoded fragment libraries
MOLECULAR SYSTEMS BIOLOGY
IF7.7
2024-10-070
OAAI
Biggs, Bradley W.; Price, Morgan N.; Lai, Dexter; Escobedo, Jasmine; Fortanel, Yuridia; Huang, Yolanda Y.; Kim, Kyoungmin; Trotter, Valentine V.; Kuehl, Jennifer, V; Lui, Lauren M.; Chakraborty, Romy; Deutschbauer, Adam M.; Arkin, Adam P.
Nitrogen accountancy in space agriculture
NPJ MICROGRAVITY
IF4.1
2024-09-280
OAAI
Yates, Kevin; Berliner, Aaron J.; Makrygiorgos, Georgios; Kaiyom, Farrah; Mcnulty, Matthew J.; Khan, Imran; Kusuma, Paul; Kinlaw, Claire; Miron, Diogo; Legg, Charles; Wilson, James; Bugbee, Bruce; Mesbah, Ali; Arkin, Adam P.; Nandi, Somen; Mcdonald, Karen A.
Potential applications of microbial genomics in nuclear non-proliferation

微生物基因组学在核不扩散中的潜在应用

FRONTIERS IN MICROBIOLOGY
IF4.5
2024-09-180
OAAI
MacGregor, Heather; Fukai, Isis; Ash, Kurt; Arkin, Adam Paul; Hazen, Terry C.
Fitness factors impacting survival of a subsurface bacterium in contaminated groundwater
ISME JOURNAL
IF10
2024-09-110
OAAI
Thorgersen, Michael P.; Goff, Jennifer L.; Trotter, Valentine V.; Poole II, Farris L.; Arkin, Adam P.; Deutschbauer, Adam M.; Adams, Michael W. W.
High-throughput genetics enables identification of nutrient utilization and accessory energy metabolism genes in a model methanogen
MBIO
IF4.7
2024-09-110
OAAI
Day, Leslie A.; Carlson, Hans K.; Fonseca, Dallas R.; Arkin, Adam P.; Price, Morgan N.; Deutschbauer, Adam M.; Costa, Kyle C.
Interactive tools for functional annotation of bacterial genomes
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
IF3.6
2024-09-060
OAAI
Price, Morgan N.; Arkin, Adam P.
Molecular mechanisms and environmental adaptations of flagellar loss and biofilm growth of Rhodanobacter under environmental stress
ISME JOURNAL
IF10
2024-08-081
OA
Chen, Mingfei; Trotter, Valentine V.; Walian, Peter J.; Chen, Yan; Lopez, Romario; Lui, Lauren M.; Nielsen, Torben N.; Malana, Ria Gracielle; Thorgersen, Michael P.; Hendrickson, Andrew J.; Carion, Heloise; Deutschbauer, Adam M.; Petzold, Christopher J.; Smith, Heidi J.; Arkin, Adam P.; Adams, Michael W. W.; Fields, Matthew W.; Chakraborty, Romy
Barcoded overexpression screens in gut Bacteroidales identify genes with roles in carbon utilization and stress resistance

肠道拟杆菌中的条形码过表达筛选鉴定在碳利用和抗逆性中起作用的基因

NATURE COMMUNICATIONS
IF15.7
2024-08-051
OAAI
Huang, Yolanda Y.; Price, Morgan N.; Hung, Allison; Gal-Oz, Omree; Tripathi, Surya; Smith, Christopher W.; Ho, Davian; Carion, Heloise; Deutschbauer, Adam M.; Arkin, Adam P.
Mixed waste contamination selects for a mobile genetic element population enriched in multiple heavy metal resistance genes
ISME COMMUNICATIONS
IF6.1
2024-05-091
OAAI
Goff, Jennifer L.; Lui, Lauren M.; Nielsen, Torben N.; Poole, Farris L.; Smith, Heidi J.; Walker, Kathleen F.; Hazen, Terry C.; Fields, Matthew W.; Arkin, Adam P.; Adams, Michael W. W.
Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide
ENVIRONMENTAL SCIENCE & TECHNOLOGY
IF11.3
2024-04-120
PRE
Hunt, Kristopher A.; Carr, Alex V.; Otwell, Anne E.; Valenzuela, Jacob J.; Walker, Kathleen S.; Dixon, Emma R.; Lui, Lauren M.; Nielsen, Torben N.; Bowman, Samuel; von Netzer, Frederick; Moon, Ji-Won; Schadt, Christopher W.; Rodriguez Jr, Miguel; Lowe, Kenneth; Joyner, Dominique; Davis, Katherine J.; Wu, Xiaoqin; Chakraborty, Romy; Fields, Matthew W.; Zhou, Jizhong; Hazen, Terry C.; Arkin, Adam P.; Wankel, Scott D.; Baliga, Nitin S.; Stahl, David A.
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

CAGI，基因组解释的关键评估，建立了计算遗传变异解释方法的进展和前景

GENOME BIOLOGY
IF9.4
2024-02-2210
OAAI
Jain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult, John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Diez, Orland; Gutierrez-Enriquez, Sara; Fernandez, Alejandro; Montalban, Gemma; Ootes, Lars; Ozkan, Selen; Padilla, Natalia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Celik, Muhammed H.; Thi Yen Duong Nguyen; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Goke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O'Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gokcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Kramer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Izila; Holtzer, Iamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Valiaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Mort, Matthew; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Loescher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; LeBowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Bus-Ije, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Ioldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; McCombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Tavtigian, Sean V.; Cole, Alina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; McInnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Cline, Melissa S.; Pandey, Gaurav; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Clark, Wyatt T.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Tavtigian, Sean V.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Church, George M.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O'Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Tavtigian, Sean V.; Veltman, Joris; Zook, Justin M.
Domains of life sciences in spacefaring: what, where, and how to get involved
NPJ MICROGRAVITY
IF4.1
2024-01-292
OAAI
Berliner, Aaron J.; Zezulka, Spencer; Hutchinson, Gwyneth A.; Bertoldo, Sophia; Cockell, Charles S.; Arkin, Adam P.
A bacterial sensor taxonomy across earth ecosystems for machine learning applications

用于机器学习应用的跨地球生态系统的细菌传感器分类法

MSYSTEMS
IF4.6
2024-01-230
OAAI
Park, Helen; Joachimiak, Marcin P.; Jungbluth, Sean P.; Yang, Ziming; Riehl, William J.; Canon, R. Shane; Arkin, Adam P.; Dehal, Paramvir S.

Research Directions

The data has not been retrieved yet.
A
Adam M. Deutschbauer
H-index:50Papers:275Citations:1.5万
M
Morgan N. Price
H-index:49Papers:180Citations:3.3万
T
Terry C. Hazen
H-index:76Papers:616Citations:2.3万
J
Jizhong Zhou
H-index:151Papers:1,079Citations:8.9万
Z
Zhili He
H-index:98Papers:540Citations:4.0万
J
Judy D. Wall
H-index:53Papers:325Citations:1.1万
M
Matthew W. Fields
H-index:52Papers:222Citations:9,013
R
Romy Chakraborty
H-index:40Papers:191Citations:7,682
J
Jeffrey M. Skerker
H-index:33Papers:107Citations:5,600
V
Vivek K. Mutalik
H-index:28Papers:87Citations:4,693