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Romy Chakraborty

Lawrence Berkeley National Laboratory

40H-index
190Paper Count
7.7KCitation Count
Published Papers 58
Publication Date
Toward an integrative framework for monitoring biodegradation of environmental contaminants across scales
err2026-02-25
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PREAI
errYuguo Yang; Mingfei Chen; Susannah G Tringe; Harshini Mukundan; Romy Chakraborty
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A stable 15-member bacterial SynCom promotes Brachypodium growth under drought stress
err2025-08-11
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errOAAI
errArchana Yadav†; Mingfei Chen†; Shwetha M. Acharya; Grace Kim; Yuguo Yang; Tiffany Z. Zhao; Eunice Tsang; Romy Chakraborty
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Unraveling the influence of microbial necromass on subsurface microbiomes: metabolite utilization and community dynamics
err2025-01-29
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errOAAI
errFinley, Brianna K.; Enalls, Brandon C.; de Raad, Markus; Al Said, Mariam; Chen, Mingfei; Joyner, Dominique C.; Hazen, Terry C.; Northen, Trent R.; Chakraborty, Romy
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High-throughput protein characterization by complementation using DNA barcoded fragment libraries
err2024-10-07
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errOAAI
errBiggs, Bradley W.; Price, Morgan N.; Lai, Dexter; Escobedo, Jasmine; Fortanel, Yuridia; Huang, Yolanda Y.; Kim, Kyoungmin; Trotter, Valentine V.; Kuehl, Jennifer, V; Lui, Lauren M.; Chakraborty, Romy; Deutschbauer, Adam M.; Arkin, Adam P.
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Molecular mechanisms and environmental adaptations of flagellar loss and biofilm growth of Rhodanobacter under environmental stress
err2024-08-08
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errOAAI
errChen, Mingfei; Trotter, Valentine V.; Walian, Peter J.; Chen, Yan; Lopez, Romario; Lui, Lauren M.; Nielsen, Torben N.; Malana, Ria Gracielle; Thorgersen, Michael P.; Hendrickson, Andrew J.; Carion, Heloise; Deutschbauer, Adam M.; Petzold, Christopher J.; Smith, Heidi J.; Arkin, Adam P.; Adams, Michael W. W.; Fields, Matthew W.; Chakraborty, Romy
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Developing stable, simplified, functional consortia from Brachypodium rhizosphere for microbial application in sustainable agriculture
err2024-05-23
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errChen, Mingfei; Acharya, Shwetha M.; Yee, Mon Oo; Cabugao, Kristine Grace M.; Chakraborty, Romy
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Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface
err2024-04-26
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errGoff, Jennifer L.; Szink, Elizabeth G.; Durrence, Konnor L.; Lui, Lauren M.; Nielsen, Torben N.; Kuehl, Jennifer V.; Hunt, Kristopher A.; Chandonia, John-Marc; Huang, Jiawen; Thorgersen, Michael P.; Poole II, Farris L.; Stahl, David A.; Chakraborty, Romy; Deutschbauer, Adam M.; Arkin, Adam P.; Adams, Michael W. W.
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Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide
err2024-04-12
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PREAI
errHunt, Kristopher A.; Carr, Alex V.; Otwell, Anne E.; Valenzuela, Jacob J.; Walker, Kathleen S.; Dixon, Emma R.; Lui, Lauren M.; Nielsen, Torben N.; Bowman, Samuel; von Netzer, Frederick; Moon, Ji-Won; Schadt, Christopher W.; Rodriguez Jr, Miguel; Lowe, Kenneth; Joyner, Dominique; Davis, Katherine J.; Wu, Xiaoqin; Chakraborty, Romy; Fields, Matthew W.; Zhou, Jizhong; Hazen, Terry C.; Arkin, Adam P.; Wankel, Scott D.; Baliga, Nitin S.; Stahl, David A.
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Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone
err2023-06-28
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errWu, Xiaoqin; Gushgari-Doyle, Sara; Lui, Lauren M.; Hendrickson, Andrew J.; Liu, Yina; Jagadamma, Sindhu; Nielsen, Torben N.; Justice, Nicholas B.; Simmons, Tuesday; Hess, Nancy J.; Joyner, Dominique C.; Hazen, Terry C.; Arkin, Adam P.; Chakraborty, Romy
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Fine scale sampling reveals early differentiation of rhizosphere microbiome from bulk soil in young Brachypodium plant roots
err2023-06-06
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errOAAI
errAcharya, Shwetha M.; Yee, Mon Oo; Diamond, Spencer; Andeer, Peter F.; Baig, Nameera F.; Aladesanmi, Omolara T.; Northen, Trent R.; Banfield, Jillian F.; Chakraborty, Romy
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Development of a Markerless Deletion Mutagenesis System in Nitrate-Reducing Bacterium Rhodanobacter denitrificans
err2022-07-26
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errTao, Xuanyu; Zhou, Aifen; Kempher, Megan L.; Liu, Jiantao; Peng, Mu; Li, Yuan; Michael, Jonathan P.; Chakraborty, Romy; Deutschbauer, Adam M.; Arkin, Adam P.; Zhou, Jizhong
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A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria
err2022-05-25
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errde Raad, Markus; Li, Yifan V.; Kuehl, Jennifer V.; Andeer, Peter F.; Kosina, Suzanne M.; Hendrickson, Andrew; Saichek, Nicholas R.; Golini, Amber N.; Han, La Zhen; Wang, Ying; Bowen, Benjamin P.; Deutschbauer, Adam M.; Arkin, Adam P.; Chakraborty, Romy; Northen, Trent R.
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Characterizing Natural Organic Matter Transformations by Microbial Communities in Terrestrial Subsurface Ecosystems: A Critical Review of Analytical Techniques and Challenges
err2022-05-04
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errCabugao, Kristine Grace M.; Gushgari-Doyle, Sara; Chacon, Stephany S.; Wu, Xiaoqin; Bhattacharyya, Amrita; Bouskill, Nicholas; Chakraborty, Romy
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Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions
err2022-03-30
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errOAAI
errGushgari-Doyle, Sara; Lui, Lauren M.; Nielsen, Torben N.; Wu, Xiaoqin; Malana, Ria G.; Hendrickson, Andrew J.; Carion, Heloise; Poole, Farris L.; Adams, Michael W. W.; Arkin, Adam P.; Chakraborty, Romy
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Genomic Features and Pervasive Negative Selection in Rhodanobacter Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer
err2022-02-23
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errPeng, Mu; Wang, Dongyu; Lui, Lauren M.; Nielsen, Torben; Tian, Renmao; Kempher, Megan L.; Tao, Xuanyu; Pan, Chongle; Chakraborty, Romy; Deutschbauer, Adam M.; Thorgersen, Michael P.; Adams, Michael W. W.; Fields, Matthew W.; Hazen, Terry C.; Arkin, Adam P.; Zhou, Aifen; Zhou, Jizhong
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Membrane Bioreactor Pretreatment of High-Salinity O&G Produced Water
err2022-02-18
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errOAAI
errVan Houghton, Brett D.; Acharya, Shwetha M.; Rosenblum, James S.; Chakraborty, Romy; Tringe, Susannah Green; Cath, Tzahi Y.
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Comparative Genomics Reveals Insights into Induction of Violacein Biosynthesis and Adaptive Evolution in Janthinobacterium
err2021-12-22
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errOAAI
errWu, Xiaoqin; Kazakov, Alexey E.; Gushgari-Doyle, Sara; Yu, Xingli; Trotter, Valentine; Stuart, Rhona Kayra; Chakraborty, Romy
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Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Pseudomonas Co-culture Biofilms
err2021-12-09
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errKosina, Suzanne M.; Rademacher, Peter; Wetmore, Kelly M.; de Raad, Markus; Zemla, Marcin; Zane, Grant M.; Zulovich, Jennifer J.; Chakraborty, Romy; Bowen, Benjamin P.; Wall, Judy D.; Auer, Manfred; Arkin, Adam P.; Deutschbauer, Adam M.; Northen, Trent R.
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Plant Growth Promotion Diversity in Switchgrass-Colonizing, Diazotrophic Endophytes
err2021-11-12
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errGushgari-Doyle, Sara; Schicklberger, Marcus; Li, Yifan V.; Walker, Robert; Chakraborty, Romy
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Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
err2021-06-29
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errKothari, Ankita; Roux, Simon; Zhang, Hanqiao; Prieto, Anatori; Soneja, Drishti; Chandonia, John-Marc; Spencer, Sarah; Wu, Xiaoqin; Altenburg, Sara; Fields, Matthew W.; Deutschbauer, Adam M.; Arkin, Adam P.; Alm, Eric J.; Chakraborty, Romy; Mukhopadhyay, Aindrila
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