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Qing Nie

University of California

65H-index
454Paper Count
2.7WCitation Count
Published Papers 167
Publication Date
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Integrative cross-sample alignment and spatially differential gene analysis for spatial transcriptomics
errNature Communications
IF15.7
err2026-06-25
err0
errOAAI
errYecheng Tan; Zezhou Wang; Ai Wang; Yan Yan; Wei Lin; Qing Nie; Jifan Shi
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Inferring stochastic dynamics by biophysical Neural ODE using single-cell transcriptomics
errNature Communications
IF15.7
err2026-05-19
err0
errOAAI
errJingyu Dou; Wentao Lyu; Feng Chen; Qing Nie; Chunhe Li
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Reconstructing single-cell resolution from spatial transcriptomics with CellRefiner
errNature Communications
IF15.7
err2026-02-27
err0
errOAAI
errEric Bourgain-Chang; Xiangyu Kuang; Zixuan Cang; Qing Nie
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errSave
Interpretable data integration for single-cell and spatial multi-omics
errCell Systems
IF7.7
err2026-02-04
err0
errOAAI
errChenghui Yang; Zhentao He; Qing Nie; Lihua Zhang
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errSave
Mdivi-1 alleviates aseptic craniofacial osteolysis via inhibition of PINK1/Parkin-dependent mitophagy
errBone
IF3.6
err2025-11-29
err0
PREAI
errXiaoyue Sun; Binqian Liu; Zetong Li; Songqin Zhou; Zijun Wang; Jingjing Yu; Qing Nie; Lingxin Zhu
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errSave
Statistically principled feature selection for single cell transcriptomics
errBMC Bioinformatics
IF3.3
err2025-10-04
err0
errOAAI
errEmmanuel P. Dollinger; Kai Silkwood; Scott Atwood; Qing Nie; Arthur D. Lander
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Retinal polyunsaturated fatty acid supplementation reverses aging-related vision decline in mice
errScience Translational Medicine
IF14.6
err2025-09-24
err0
PREAI
errFangyuan Gao; Emily Tom; Cezary Rydz; William Cho; Alexander V. Kolesnikov; Yutong Sha; Anastasios Papadam; Samantha Jafari; Andrew Joseph; Ava Ahanchi; Nika Balalaei Someh Saraei; David C. Lyon; Andrzej Foik; Qing Nie; Felix Grassmann; Vladimir J. Kefalov; Dorota Skowronska-Krawczyk
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errSave
Optimal Transport based Cross-Domain Integration for Heterogeneous Data
errJOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
IF3
err2025-09-01
err0
PREAI
errYuan, Yubai; Zhang, Yijiao; Shahbaba, Babak; Fortin, Norbert; Cooper, Keiland; Nie, Qing; Qu, Annie
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errSave
Spatial and single-cell transcriptomics reveal keratinocytes as key players in vulvar lichen sclerosus pathogenesis
errJournal of Investigative Dermatology
IF5.7
err2025-08-29
err0
PREAI
errPeng Sun; Christina N. Kraus; Wei Zhao; Jiahui Xu; Susie Suh; Quy Nguyen; Yunlong Jia; Arjun Nair; Melanie Oakes; Roberto Tinoco; Jessica Shiu; Bryan Sun; Ashley Elsensohn; Scott X. Atwood; Qing Nie; Xing Dai
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Hepatopancreas transcriptome analysis reveals the adaptation mechanism to high temperature in the clam Cyclina sinensis
errAquaculture Reports
IF3.7
err2025-08-28
err0
PREAI
errDehui Sun; Fengjuan Jiang; Qing Nie; Lisha Wei; Xiuke Ouyang
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errSave
Metabolomic analysis of Hepatopancreas revealed the metabolic responses of clam Cyclina sinensis towards high temperature stress
errAquaculture Reports
IF3.7
err2025-08-08
err0
PREAI
errXiuke Ouyang; Lisha Wei; Xuehong Tong; Fengjuan Jiang; Qing Nie; Wenwen Dong; Dehui Sun
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errSave
The motor neuron m6A repertoire governs neuronal homeostasis and FTO inhibition mitigates ALS symptom manifestation
errNATURE COMMUNICATIONS
IF15.7
err2025-04-30
err0
errOAAI
errYen, Ya-Ping; Lung, Ting-Hsiang; Liau, Ee Shan; Wu, Chuan-Che; Huang, Guan-Lin; Hsu, Fang-Yu; Chang, Mien; Yang, Zheng-Dao; Huang, Chia-Yi; Zheng, Zhong; Zhao, Wei; Hung, Jui-Hung; He, Chuan; Nie, Qing; Chen, Jun-An
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Recent advances of edible marine algae-derived sulfated polysaccharides in antiviral treatments: challenges vs. opportunities
errFRONTIERS IN NUTRITION
IF5.1
err2025-03-26
err0
errOAAI
errDong, Xiaoying; Qiu, Yusong; Jia, Nan; Wu, Yinfeng; Nie, Qing; Wen, Jiahui; Zhao, Chao; Zhai, Yongzhen
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Integrated Single-Cell Analysis Reveals Spatially and Temporally Dynamic Heterogeneity in Fibroblast States during Wound Healing
errJOURNAL OF INVESTIGATIVE DERMATOLOGY
IF5.7
err2025-03-01
err2
errOAAI
errAlmet, Axel A.; Liu, Yingzi; Nie, Qing; Plikus, Maksim, V
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Algae-derived polysaccharides and polysaccharide-based nanoparticles: A natural frontier in breast cancer therapy
errINTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
IF8.5
err2025-03-01
err0
PREAI
errCai, Jiaer; Liao, Wei; Wen, Jiahui; Ye, Fangting; Nie, Qing; Chen, Weichao; Zhao, Chao
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errSave
Detecting global and local hierarchical structures in cell-cell communication using CrossChat
errNATURE COMMUNICATIONS
IF15.7
err2024-12-03
err0
errOAAI
errWang, Xinyi; Almet, Axel A.; Nie, Qing
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errSave
Single-cell transcriptomics reveals aberrant skin-resident cell populations and identifies fibroblasts as a determinant in rosacea
errNATURE COMMUNICATIONS
IF15.7
err2024-10-09
err1
errOAAI
errChen, Mengting; Yang, Li; Zhou, Peijie; Jin, Suoqin; Wu, Zheng; Tan, Zixin; Xiao, Wenqin; Xu, San; Zhu, Yan; Wang, Mei; Jian, Dan; Liu, Fangfen; Tang, Yan; Zhao, Zhixiang; Huang, Yingxue; Shi, Wei; Xie, Hongfu; Nie, Qing; Wang, Ben; Deng, Zhili; Li, Ji
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CellChat for systematic analysis of cell-cell communication from single-cell transcriptomics
errNATURE PROTOCOLS
IF16
err2024-09-16
err10
PREAI
errJin, Suoqin; Plikus, Maksim V.; Nie, Qing
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LMNA-Related Dilated Cardiomyopathy: Single-Cell Transcriptomics during Patient-Derived iPSC Differentiation Support Cell Type and Lineage-Specific Dysregulation of Gene Expression and Development for Cardiomyocytes and Epicardium-Derived Cells with Lamin A/C Haploinsufficiency
errCELLS
IF5.2
err2024-09-03
err0
errOAAI
errZaragoza, Michael V.; Bui, Thuy-Anh; Widyastuti, Halida P.; Mehrabi, Mehrsa; Cang, Zixuan; Sha, Yutong; Grosberg, Anna; Nie, Qing
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Tipping points in epithelial-mesenchymal lineages from single-cell transcriptomics data
errBIOPHYSICAL JOURNAL
IF3.1
err2024-09-01
err3
errOAAI
errBarcenas, Manuel; Bocci, Federico; Nie, Qing
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Research Directions

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Co-authors
Cooperation Journals
C
Chuan He
H-index: 161 · Papers: 978
S
Simon A. Levin
H-index: 143 · Papers: 996
J
Joseph S. Takahashi
H-index: 128 · Papers: 449
F
Fabian J. Theis
H-index: 125 · Papers: 1.1K
E
Enrico Gratton
H-index: 122 · Papers: 1.2K
View more