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Peter J. Skene

Allen Institute for Immunology

18H-index
96Paper Count
5.4KCitation Count
Published Papers 34
Publication Date
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Author Correction: Multi-omic profiling reveals age-related immune dynamics in healthy adults
errNature
IF48.5
err2026-04-10
err0
errOAAI
errQiuyu Gong; Mehul Sharma; Marla C. Glass; Emma L. Kuan; Aishwarya Chander; Mansi Singh; Lucas T. Graybuck; Zachary J. Thomson; Christian M. LaFrance; Samir Rachid Zaim; Tao Peng; Lauren Y. Okada; Palak C. Genge; Katherine E. Henderson; Elisabeth M. Dornisch; Erik D. Layton; Peter J. Wittig; Alexander T. Heubeck; Nelson M. Mukuka; Julian Reading; Garrett Strawn; Teminijesu Titus-Adewunmi; Kathleen Abadie; Charles R. Roll; Veronica Hernandez; Vaishnavi Parthasarathy; Tyanna J. Stuckey; Blessing Musgrove; Elliott Swanson; Cara Lord; Morgan D. A. Weiss; Cole G. Phalen; Regina R. Mettey; Kevin J. Lee; John B. Johanneson; Erin K. Kawelo; Jessica Garber; Upaasana Krishnan; Megan Smithmyer; E. John Wherry; Laura A. Vella; Sarah E. Henrickson; Mackenzie S. Kopp; Adam K. Savage; Lynne A. Becker; Paul Meijer; Ernest M. Coffey; Jorg J. Goronzy; Mikael Sigvardsson; Cate Speake; Thomas F. Bumol; Ananda W. Goldrath; Troy R. Torgerson; Xiao-jun Li; Peter J. Skene; Jane H. Buckner; Claire E. Gustafson
errShare
errSave
Neuro-epithelial circuits promote sensory convergence and intestinal immunity
errNature
IF48.5
err2026-01-07
err0
PREAI
errWen Zhang; Elizabeth R. Emanuel; Hiroshi Yano; Jazib Uddin; Stephen Gaudino; Zili Xie; Hiroshi Ichise; Zhen Wang; Maureen N. Cowan; Mengze Lyu; Xiaoxiao Hou; Peng Zeng; Elin Hu; Victoria Ribeiro de Godoy; Alex Grier; Nina Estep; Julien R. Ishibashi; Stephanie Anover-Sombke; Peter J. Skene; Toufic Mayassi; Ramnik J. Xavier; Ronald N. Germain; Anna-Maria Globig; Maximilian Heeg; Ananda W. Goldrath; Brian S. Kim; Hongzhen Hu; David Artis
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errSave
Epigenetic control of pathogenic CD4 T cell polarization during progression to rheumatoid arthritis
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errHe, Ziyuan; Venkatesan, Pravina; Savage, Adam; Glass, Marla C.; Okada, Lauren Y.; Krishnan, Upaasana; Bennett, Christy E.; Tran, Nhung T.; He, Yudong D.; Zaim, Samir Rachid; Ravisankar, Padmapriyadarshini; Garber, Jessica; Genge, Palak C.; Lee, Kevin J.; Phalen, Cole G.; Mettey, Regina R.; Feser, Marie L.; Buckner, Jane H.; Goldrath, Ananda W.; Bumol, Thomas F.; Li, Xiao-jun; Holers, Michael; Skene, Peter J.; Firestein, Gary S.; Deane, Kevin D.; Torgerson, Troy R.; Gillespie, Mark A.
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errSave
Longitudinal multi-omic immune profiling of the healthy pediatric immune system and its response to vaccination
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errMary, Teminijesu; Adewunmi, Titus; Abadie, Kathleen; Gong, Qiuyu; Sharma, Mehul; Krishnan, Upaasana; Singh, Mansi; Henderson, Katherine; Kopp, Mackenzie; Li, Xiaojun; Skene, Peter; Wherry, E. John; Torgerson, Troy R.; Henrickson, Sarah Emily; Vella, Laura; Gustafson, Claire E.
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errSave
The B cell compartment exhibits a pro-inflammatory skewing during progression to Rheumatoid Arthritis
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errGlass, Marla; He, Ziyuan; Venkatesan, Pravina; Dornisch, Elisabeth; Okada, Lauren; He, Yudong; Zaim, Samir Rachid; Ravisankar, Padmapriyadarshini; Garber, Jessica; Genge, Palak; Gong, Qiuyu; Graybuck, Lucas T.; Gustafson, Claire E.; Hernandez, Veronica; Heubeck, Alex; Kawelo, Erin; Krishnan, Upaasana; Musgrove, Blessing; Parthasarathy, Vaishnavi; Phalen, Cole; Reading, Julian; Stuckey, Tyanna; Bennett, Christy; Zhang, Fan; Boyle, David; Goldrath, Ananda; Bumol, Thomas F.; Li, Xiao-jun; Holers, Michael; Skene, Peter; Savage, Adam; Firestein, Gary; Deane, Kevin D.; Torgerson, Troy R.; Gillespie, Mark
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Understanding the GATA3-TBX21 axis in granzyme-based differentiation profiles of human CD8 T cells
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errStrawn, Garrett; Henderson, Katherine; Mukuka, Nelson; Gong, Quiyu; Sharma, Mehul; Kopp, Mackenzie; Li, Xiaojun; Torgerson, Troy R.; Skene, Peter; Gillespie, Mark; Gustafson, Claire E.
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errSave
Online resources from the Allen institute for immunology: the human immune health atlas and human immune system explorer platform
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errGraybuck, Lucas T.; La France, Christian; Howard, Nicole; Liang, Jessica; Kelsey, Autumn; Okada, Lauren; Thomson, Zachary; Gong, Qiuyu; Sharma, Mehul; Glass, Marla; Chander, Aishwarya; Singh, Mansi; Zaim, Samir Rachid; Peng, Tao; Genge, Palak; Henderson, Katherine; Dornisch, Elisabeth; Layton, Erik; Wittig, Peter; Heubeck, Alex; Mukuka, Nelson; Reading, Julian; Roll, Charles; Hernandez, Veronica; Parthasarathy, Vaishnavi; Stuckey, Tyanna; Musgrove, Blessing; Swanson, Elliott; Lord, Cara; Weiss, Morgan; Phalen, Cole; Mettey, Regina; Lee, Kevin; Johanneson, John; Kawelo, Erin; Garber, Jessica; Krishnan, Upaasana; Aggoune, Yousef; Ambrose, Madeline; Beaubien, Aldan; Harvey, James; Inala, Neelima; Johnson, Ed; Kinsey, Melissa; Mariz, Paul; Pister, Stark; Subramanian, Sathya; Tereshchenko, Vitalii; Vetto, Anne; Smithmeyer, Megan; Wherry, E. John; Vella, Laura; Henrickson, Sarah Emily; Kopp, Mackenzie; Savage, Adam; Becker, Lynne A.; Coffey, Ernie; Goronzy, Jorg; Speake, Cate; Bumol, Thomas; Goldrath, Ananda; Torgerson, Troy R.; Li, Xiao-jun; Buckner, Jane H.; Skene, Peter; Gustafson, Claire E.; Meijer, Paul
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errSave
Novel mediators of human naive CD4 T cell resilience across the aging spectrum
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errMukuka, Nelson; Gustafson, Claire E.; Henderson, Katherine; Torgerson, Troy R.; Strawn, Garrett; Gong, Qiuyu; Wharton, Melissa; Skene, Peter; Gillepsie, Mark; Li, Xiaojun
errShare
errSave
Spatial dynamics of human secondary lymphoid tissues
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errAbadie, Kathleen; Mary, Teminijesu; Adewunmi, Titus; Li, Rita; Ishibashi, Julien; Estep, Nina; Johanneson, Jack; Thomson, Zach; Kopp, Mackenzie; Anover-Sombke, Stephanie; Heeg, Maximilian; Skene, Peter; Torgerson, Troy R.; Goldrath, Ananda; Li, Xiaojun; Gustafson, Claire E.
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errSave
Bridging the identity and function of human plasma cells
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errGlass, David R.; Dornisch, Elisabeth; Graybuck, Lucas T.; Pebworth, Mark-Phillip; Phalen, Cole; Kaul, Saransh; Ludmann, Susan; Dillon, Medbh; Angus-Hill, Melinda; Malone, Jocelin Karina; Parthasarathy, Vaishnavi; Yin, Hang; Henderson, Katherine; Stuckey, Tyanna; Musgrove, Blessing; Thomson, Zach; Weiss, Morgan; Kopp, Mackenzie; Reading, Julian; Li, Xiao-jun; Bumol, Thomas; Bendall, Sean; Skene, Peter; Sigvardsson, Mikael; Goldrath, Ananda; Green, Damian; Torgerson, Troy R.; Newell, Evan W.; Glass, Marla
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errSave
Systemic inflammation and transcriptional reprogramming contribute to progression to active rheumatoid arthritis in ACPA plus individuals
errJOURNAL OF IMMUNOLOGY
IF3.4
err2025-11-01
err0
PREAI
errGillespie, Mark A.; He, Ziyuan; Venkatesan, Pravina; Glass, Marla; Feser, Marie; Lazaro, Leander; Okada, Lauren; Tran, Nhung; He, Yudong; Zaim, Samir Rachid; Bennett, Christy; Ravisankar, Priya; Demoruelle, M. Kristen; Gong, Qiuyu; Graybuck, Lucas T.; Gustafson, Claire E.; Krishnan, Upaasana; Kuhn, Kristi A.; Reading, Julian; Zhang, Fan; Boyle, David; Goldrath, Ananda W.; Bumol, Thomas F.; Li, Xiao-jun; Holers, V. Michael; Skene, Peter; Savage, Adam; Firestein, Gary; Deane, Kevin; Torgerson, Troy R.
errShare
errSave
Multi-omic profiling reveals age-related immune dynamics in healthy adults
errNature
IF48.5
err2025-10-29
err0
errOAAI
errQiuyu Gong; Mehul Sharma; Marla C. Glass; Emma L. Kuan; Aishwarya Chander; Mansi Singh; Lucas T. Graybuck; Zachary J. Thomson; Christian M. LaFrance; Samir Rachid Zaim; Tao Peng; Lauren Y. Okada; Palak C. Genge; Katherine E. Henderson; Elisabeth M. Dornisch; Erik D. Layton; Peter J. Wittig; Alexander T. Heubeck; Nelson M. Mukuka; Julian Reading; Garrett Strawn; Teminijesu Titus-Adewunmi; Kathleen Abadie; Charles R. Roll; Veronica Hernandez; Vaishnavi Parthasarathy; Tyanna J. Stuckey; Blessing Musgrove; Elliott Swanson; Cara Lord; Morgan D. A. Weiss; Cole G. Phalen; Regina R. Mettey; Kevin J. Lee; John B. Johanneson; Erin K. Kawelo; Jessica Garber; Upaasana Krishnan; Megan Smithmyer; E. John Wherry; Laura A. Vella; Sarah E. Henrickson; Mackenzie S. Kopp; Adam K. Savage; Lynne A. Becker; Paul Meijer; Ernest M. Coffey; Jorg J. Goronzy; Mikael Sigvardsson; Cate Speake; Thomas F. Bumol; Ananda W. Goldrath; Troy R. Torgerson; Xiao-jun Li; Peter J. Skene; Jane H. Buckner; Claire E. Gustafson
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errSave
Progression to rheumatoid arthritis in at-risk individuals is defined by systemic inflammation and by T and B cell dysregulation
errScience Translational Medicine
IF14.6
err2025-09-24
err0
PREAI
errZiyuan He; Marla C. Glass; Pravina Venkatesan; Marie L. Feser; Leander Lazaro; Lauren Y. Okada; Nhung T. T. Tran; Yudong D. He; Samir Rachid Zaim; Christy E. Bennett; Padmapriyadarshini Ravisankar; Elisabeth M. Dornisch; Alexandra C. Ferrannini; Najeeb A. Arishi; Ashley G. Asamoah; Saman Barzideh; Lynne A. Becker; Elizabeth A. Bemis; Jane H. Buckner; Christopher E. Collora; Megan A. L. Criley; M. Kristen Demoruelle; Chelsie L. Fleischer; Jessica Garber; Palak C. Genge; Qiuyu Gong; Lucas T. Graybuck; Claire E. Gustafson; Brian C. Hattel; Veronica Hernandez; Alexander T. Heubeck; Erin K. Kawelo; Upaasana Krishnan; Emma L. Kuan; Kristine A. Kuhn; Christian M. LaFrance; Kevin J. Lee; Ruoxin Li; Cara Lord; Regina R. Mettey; Laura Moss; Blessing Musgrove; Katherine HY Nguyen; Andrea Ochoa; Vaishnavi Parthasarathy; Mark-Phillip Pebworth; Chong Pedrick; Tao Peng; Cole G. Phalen; Julian Reading; Charles R. Roll; Jennifer A. Seifert; Marguerite D. Siedschlag; Cate Speake; Christopher C. Striebich; Tyanna J. Stuckey; Elliott G. Swanson; Hideto Takada; Tylor Thai; Zachary J. Thomson; Nguyen Trieu; Vlad Tsaltskan; Wei Wang; Morgan D. A. Weiss; Amy Westermann; Fan Zhang; David L. Boyle; Ananda W. Goldrath; Thomas F. Bumol; Xiao-jun Li; V. Michael Holers; Peter J. Skene; Adam K. Savage; Gary S. Firestein; Kevin D. Deane; Troy R. Torgerson; Mark A. Gillespie
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errSave
SPARROW reveals microenvironment-zone-specific cell states in healthy and diseased tissues
errCELL SYSTEMS
IF7.7
err2025-03-01
err0
errOAAI
errZhao, Peiyao A.; Li, Ruoxin; Adewunmi, Temi; Garber, Jessica; Gustafson, Claire; Kim, June; Malone, Jocelin; Savage, Adam; Skene, Peter; Li, Xiao-jun
errShare
errSave
CryoSCAPE: Scalable immune profiling using cryopreserved whole blood for multi-omic single cell and functional assays
errJOURNAL OF TRANSLATIONAL MEDICINE
IF7.5
err2025-01-03
err0
errOAAI
errHeubeck, Alexander T.; Phalen, Cole; Kaul, Neel; Wittig, Peter J.; Garber, Jessica; Weiss, Morgan; Genge, Palak C.; Thomson, Zachary; Gustafson, Claire; Reading, Julian; Skene, Peter J.
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errSave
Measurement of circulating viral antigens post-SARS-CoV-2 infection in a multicohort study
errCLINICAL MICROBIOLOGY AND INFECTION
IF8.5
err2024-12-01
err0
PREAI
errSwank, Zoe; Borberg, Ella; Chen, Yulu; Senussi, Yasmeen; Chalise, Sujata; Manickas-Hill, Zachary; Yu, Xu G.; Li, Jonathan Z.; Alter, Galit; Henrich, Timothy J.; Kelly, J. Daniel; Hoh, Rebecca; Goldberg, Sarah A.; Deeks, Steven G.; Martin, Jeffrey N.; Peluso, Michael J.; Talla, Aarthi; Li, Xiaojun; Skene, Peter; Bumol, Thomas F.; Torgerson, Troy R.; Czartoski, Julie L.; Mcelrath, M. Juliana; Karlson, Elizabeth W.; Walt, David R.
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errSave
MOCHA's advanced statistical modeling of scATAC-seq data enables functional genomic inference in large human cohorts
errNATURE COMMUNICATIONS
IF15.7
err2024-08-09
err0
errOAAI
errRachid Zaim, Samir; Pebworth, Mark-Phillip; Mcgrath, Imran; Okada, Lauren; Weiss, Morgan; Reading, Julian; Czartoski, Julie L.; Torgerson, Troy R.; McElrath, M. Juliana; Bumol, Thomas F.; Skene, Peter J.; Li, Xiao-jun
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errSave
Spatial resolution of immune cell lineages in the tumor microenvironment of plasma cell dyscrasias
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errDillon, Medbh A.; Arvidson, Lisa; Phalen, Cole G.; Ishibashi, Julian R.; Johanneson, John B.; Thomson, Zachary J.; Zhao, Peiyao A.; Malone, Jocelin; Kopp, Mackenzie S.; Norton, Matthew; Spang, Gabriella; Ludmann, Susan A.; Savage, Adam K.; Gustafson, Claire E.; Glass, Marla; Kuan, Emma L.; Peng, Tao; Graybuck, Lucas T.; Li, Xiao-jun; Torgerson, Troy R.; Skene, Peter J.; Goldrath, Ananda W.; Jensen, Samuel; Anover-Sombke, Stephanie; Angus-Hill, Melinda L.
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errSave
Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment (vol 24, pg 1947, 2023)
errNATURE IMMUNOLOGY
IF27.6
err2024-01-24
err0
errOAAI
errThomson, Zachary; He, Ziyuan; Swanson, Elliott; Henderson, Katherine; Phalen, Cole; Zaim, Samir Rachid; Pebworth, Mark-Phillip; Okada, Lauren Y.; Heubeck, Alexander T.; Roll, Charles R.; Hernandez, Veronica; Weiss, Morgan; Genge, Palak C.; Reading, Julian; Giles, Josephine R.; Manne, Sasikanth; Dougherty, Jeanette; Jasen, C. J.; Greenplate, Allison R.; Becker, Lynne A.; Graybuck, Lucas T.; Vasaikar, Suhas V.; Szeto, Gregory L.; Savage, Adam K.; Speake, Cate; Buckner, Jane H.; Li, Xiao-jun; Bumol, Thomas F.; Wherry, E. John; Torgerson, Troy R.; Vella, Laura A.; Henrickson, Sarah E.; Skene, Peter J.; Gustafson, Claire E.
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errSave
Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment
errNATURE IMMUNOLOGY
IF27.6
err2023-10-16
err12
errOAAI
errThomson, Zachary; He, Ziyuan; Swanson, Elliott; Henderson, Katherine; Phalen, Cole; Zaim, Samir Rachid; Pebworth, Mark-Phillip; Okada, Lauren Y.; Heubeck, Alexander T.; Roll, Charles R.; Hernandez, Veronica; Weiss, Morgan; Genge, Palak C.; Reading, Julian; Giles, Josephine R.; Manne, Sasikanth; Dougherty, Jeanette; Jasen, C. J.; Greenplate, Allison R.; Becker, Lynne A.; Graybuck, Lucas T.; Vasaikar, Suhas V.; Szeto, Gregory L.; Savage, Adam K.; Speake, Cate; Buckner, Jane H.; Li, Xiao-jun; Bumol, Thomas F.; Wherry, E. John; Torgerson, Troy R.; Vella, Laura A.; Henrickson, Sarah E.; Skene, Peter J.; Gustafson, Claire E.
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errSave

Research Directions

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