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D

David A. Duchêne

university of texas system

32H-index
230Paper Count
3.6KCitation Count
Published Papers 57
Publication Date
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Large-scale genomic surveillance reveals immunosuppression drives mutation dynamics in persistent SARS-CoV-2 infections
errNature Communications
IF15.7
err2026-06-19
err0
errOAAI
errMark P. Khurana; Alexandros Katsiferis; Neil Scheidwasser; Mathilde Marie Brünnich Sloth; Jacob Curran-Sebastian; Christian Morgenstern; Man-Hung Eric Tang; Jannik Fonager; Morten Rasmussen; Marc Stegger; Sune Lehmann; Charles Whittaker; Laust H. Mortensen; Pikka Jokelainen; Moritz U. G. Kraemer; Neil M. Ferguson; Mahan Ghafari; Tyra G. Krause; David A. Duchêne; Samir Bhatt
errShare
errSave
Silent Satisfaction and Improved Laser Ergonomics With TFL: A Prospective Randomized Controlled Trial Comparing SuperPulse Thulium Fiber Laser Versus High-power HoYAG With Moses for Flexible Ureteroscopy
errUrology
IF2
err2026-05-01
err0
PREAI
errVergamini, Lucas B.; Ito, Willian; Whiles, Bristol B.; Smith, Jill; Sardiu, Mihaela E.; Neff, Donald; Duchene, David; Molina, Wilson R.
errShare
errSave
Flexible and navigable suction ureteral access sheath’s impact on ureteroscope deflection
errWorld Journal of Urology
IF2.9
err2026-02-25
err0
PREAI
errLucas B. Vergamini; Bristol B. Whiles; Emily P. Elliott; Jared Starkey; Jill Smith; Mihaela E. Sardiu; Donald Neff; David A. Duchene; Wilson R. Molina
errShare
errSave
Deep learning from videography as a tool for measuring E. coli infection in poultry
errROYAL SOCIETY OPEN SCIENCE
IF2.9
err2025-10-08
err0
errOAAI
errScheidwasser, Neil; Poulsen, Louise Ladefoged; Leow, Prince Ravi; Khurana, Mark Poulsen; Iglesias-Carrasco, Maider; Laydon, Daniel Joseph; Donnelly, Christl Ann; Bojesen, Anders Miki; Bhatt, Samir; Duchene, David Alejandro
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errSave
Vacuum-assisted renal sheath clears 1 cm3 of stone faster than non-suction sheath in mini-percutaneous nephrolithotomy
errWORLD JOURNAL OF UROLOGY
IF2.9
err2025-05-08
err0
PREAI
errVergamini, Lucas B.; Whiles, Bristol B.; McMahon, Amber; Creswell, Michael; Starkey, Jared; Smith, Jill; Sardiu, Mihaela E.; Neff, Donald A.; Duchene, David A.; Molina, Wilson R.
errShare
errSave
Phylo2Vec: A Vector Representation for Binary Trees
errSYSTEMATIC BIOLOGY
IF5.7
err2024-06-27
err0
errOAAI
errPenn, Matthew J.; Scheidwasser, Neil; Khurana, Mark P.; Duchene, David A.; Donnelly, Christl A.; Bhatt, Samir
errShare
errSave
Holmium:yttrium-aluminium-garnet laser with MOSES technology is more efficient than thulium fibre laser in supine mini-percutaneous nephrolithotomy
errBJU INTERNATIONAL
IF4.4
err2024-05-26
err1
PREAI
errVergamini, Lucas B.; Ito, Willian; Choi, Nicholas B.; Du, Holly E.; Sardiu, Mihaela E.; Neff, Donald; Duchene, David A.; Molina, Wilson R.; Whiles, Bristol B.
errShare
errSave
ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2024-03-25
err3
errOAAI
errDuchene, David A.; Duchene, Sebastian; Stiller, Josefin; Heller, Rasmus; Ho, Simon Y. W.
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errSave
The Limits of the Constant-rate Birth-Death Prior for Phylogenetic Tree Topology Inference
errSYSTEMATIC BIOLOGY
IF5.7
err2023-12-28
err1
errOAAI
errKhurana, Mark P.; Scheidwasser-Clow, Neil; Penn, Matthew J.; Bhatt, Samir; Duchene, David A.
errShare
errSave
Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2023-12-12
err2
errOAAI
errPenn, Matthew J.; Scheidwasser, Neil; Penn, Joseph; Donnelly, Christl A.; Duchene, David A.; Bhatt, Samir
errShare
errSave
Recanalize ureteral stents with focused ultrasound
errMEDICAL PHYSICS
IF3.2
err2023-05-08
err0
PREAI
errSingh, Rohit; Samaddar, Abhirup; Duchene, David; Waller, Stephen; Yang, Xinmai
errShare
errSave
Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope (Hippotragus leucophaeus)
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2022-11-02
err6
errOAAI
errHempel, Elisabeth; Bibi, Faysal; Faith, J. Tyler; Koepfli, Klaus-Peter; Klittich, Achim M.; Duchene, David A.; Brink, James S.; Kalthoff, Daniela C.; Dalen, Love; Hofreiter, Michael; Westbury, Michael, V
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errSave
Bird lineages colonizing urban habitats have diversified at high rates across deep time
errGLOBAL ECOLOGY AND BIOGEOGRAPHY
IF6
err2022-06-19
err2
errOAAI
errIglesias-Carrasco, Maider; Tobias, Joseph A.; Duchene, David A.
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errSave
Probing the genomic limits of de-extinction in the Christmas Island rat
errCURRENT BIOLOGY
IF7.5
err2022-04-01
err11
errOAAI
errLin, Jianqing; Duchene, David; Caroe, Christian; Smith, Oliver; Ciucani, Marta Maria; Niemann, Jonas; Richmond, Douglas; Greenwood, Alex D.; MacPhee, Ross; Zhang, Guojie; Gopalakrishnan, Shyam; Gilbert, M. Thomas P.
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errSave
Short- and long-term impacts of anaerobic digestate spreading on earthworms in cropped soils
errAPPLIED SOIL ECOLOGY
IF5
err2021-12-01
err13
errOAAI
errMoinard, Victor; Redondi, Clement; Etievant, Veronique; Savoie, Antoine; Duchene, David; Pelosi, Celine; Houot, Sabine; Capowiez, Yvan
errShare
errSave
Phylogenomics
errCURRENT BIOLOGY
IF7.5
err2021-10-01
err6
errOAAI
errDuchene, David A.
errShare
errSave
Excluding Loci With Substitution Saturation Improves Inferences From Phylogenomic Data
errSYSTEMATIC BIOLOGY
IF5.7
err2021-09-11
err23
errOAAI
errDuchene, David A.; Mather, Niklas; Van der Wal, Cara; Ho, Simon Y. W.
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errSave
Evolutionary Rate Variation among Lineages in Gene Trees has a Negative Impact on Species-Tree Inference
errSYSTEMATIC BIOLOGY
IF5.7
err2021-07-13
err11
errOAAI
errVankan, Mezzalina; Ho, Simon Y. W.; Duchene, David A.
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errSave
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
errCOMMUNICATIONS BIOLOGY
IF5.1
err2021-05-14
err75
errOAAI
errRasmussen, Jacob A.; Villumsen, Kasper R.; Duchene, David A.; Puetz, Lara C.; Delmont, Tom O.; Sveier, Harald; Jorgensen, Louise von Gersdorff; Praebel, Kim; Martin, Michael D.; Bojesen, Anders M.; Gilbert, M. Thomas P.; Kristiansen, Karsten; Limborg, Morten T.
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errSave
Ecological Specialization and Evolutionary Reticulation in Extant Hyaenidae
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2021-02-24
err11
errOAAI
errWestbury, Michael, V; Le Duc, Diana; Duchene, David A.; Krishnan, Arunkumar; Prost, Stefan; Rutschmann, Sereina; Grau, Jose H.; Dalen, Love; Weyrich, Alexandra; Noren, Karin; Werdelin, Lars; Dalerum, Fredrik; Schoeneberg, Torsten; Hofreiter, Michael
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errSave

Research Directions

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Co-authors
Cooperation Journals
E
Edward C. Holmes
H-index: 165 · Papers: 1.2K
I
Inderbir S. Gill
H-index: 133 · Papers: 1.8K
M
M. Thomas P. Gilbert
H-index: 129 · Papers: 738
K
Karsten Kristiansen
H-index: 114 · Papers: 706
N
Neil M. Ferguson
H-index: 114 · Papers: 554
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