arrow
Back
E

Edward C. Holmes

the university of sydney

165H-index
1.2KPaper Count
13.7WCitation Count
Published Papers 547
Publication Date
Genomic and evolutionary basis of parthenogenesis in a disease-vector tick species
err2026-07-17
err0
PREAI
errQiang Lyu; Kuang Sheng; Hong Zhou; Jingkai Ji; Miao Wang; Feng Wang; Moujian Guo; Kun Cai; Bing Hu; Kaixiao Nie; Ruiling Zhang; Shutong Yue; Xiaobo Li; Cixiu Li; Xun Zhou; Edward C. Holmes; Jinfeng Chen; Liangsheng Zhang; Weifeng Shi
errShare
errSave
Empowering One Health with metagenomics
err2026-06-29
err0
errOAAI
errErin Harvey; Kate Van Brussel; Edward C. Holmes
errShare
errSave
Addressing the zoonotic threat of merbecoviruses
err2026-06-24
err0
PREAI
errXiaoling Li; Mei Kang; Xin-Yi Jiao; Andres Merits; Michael Veit; Félix A. Rey; Hui Dai; Xin-Yu Wang; Wan-Ting He; Edward C. Holmes; Margus Varjak; Suresh Mahalingam; Di Wang; Zhiwen Jiang; Shuai Wang; Xudong Li; Zhihang Peng; Na He; Shuo Su
errShare
errSave
Mapping the global distribution and spread of the Plasmodium vivax-associated virus MaRNAV-1
err2026-05-23
err0
errOAAI
errMary E Petrone; Justine Charon; Rhys H Parry; Matthew J Grigg; Kim A Piera; Jacob A F Westaway; Kayoko Shioda; Bruce Russell; Ric N Price; Timothy William; Enny Kenangalem; James S McCarthy; Bridget E Barber; Edward C Holmes; Nicholas M Anstey
errShare
errSave
Global approaches to infectious disease surveillance and modeling
err2026-05-20
err0
PREAI
errMark P. Khurana; Joseph L.-H. Tsui; Bernardo Gutierrez; Ayush Chopra; Neil Scheidwasser; Harrison Bo Hua Zhu; Serina Y. Chang; David A. Duchêne; Cathal Mills; Rhys P. D. Inward; Benjamin Reddy; John Brittain; Abhishek Dasgupta; James Sheldon; George Githinji; John S. Brownstein; Mélodie Monod; Luca Ferretti; Sivan Bershan; Simon Tietze; Leo Ferres; Silvia Argimón; Timothy J. Dallman; Etien Koua; Oliver Ratmann; Simon Cauchemez; Lauren A. Meyers; Lili Su; Alessandro Vespignani; Paul Pronyk; Áine O’Toole; Andrew Rambaut; Nicholas J. Loman; Edward C. Holmes; Seth Flaxman; Nicola Mulder; Oliver W. Morgan; Houriiyah Tegally; Manuel Gomez-Rodriguez; Nigel Shadbolt; Christian Happi; Meera Chand; Sofonias K. Tessema; Placide Mbala-Kingebeni; Marc A. Suchard; Oliver G. Pybus; Samuel V. Scarpino; Samir Bhatt; Moritz U. G. Kraemer
errShare
errSave
Ecological factors and genetic features are associated with ecological generalism in pathogenic tick-borne viruses
err2026-05-11
err0
errOAAI
errXue-Bing Ni; Yong-Tao Ye; Gong-Pei Wang; Ye-Xiao Cheng; Yu-Qian Wu; Yi Song; Jin-Jin Zhang; Ning-Qi Zhao; Xin Li; Dong-Sheng Chen; Tao Xiong; Tian-Feng An; Zi-Yun Chen; Zhong-Ze Fang; Edward C. Holmes; Wu-Chun Cao; Na Jia; Tommy Tsan-Yuk Lam
errShare
errSave
Dynamics and ecology of a multistage expansion of Oropouche virus in Brazil
err2026-04-01
err0
errOAAI
errTegally, Houriiyah; Dellicour, Simon; Poongavanan, Jenicca; Mavian, Carla; Dor, Graeme; Fonseca, Vagner; Tagliamonte, Massimiliano S.; Dunaiski, Marcel; Moir, Monika; Wilkinson, Eduan; Campelo de Albuquerque, Carlos Frederico; Frutuoso, Livia C. V.; Holmes, Edward C.; Baxter, Cheryl; Lessells, Richard; Kraemer, Moritz U. G.; Lourenco, Jose; Alcantara, Luiz Carlos Junior; de Oliveira, Tulio; Giovanetti, Marta
errShare
errSave
The origins and potential cross-species transmission of paramyxoviruses and other RNA viruses between native snakes and invasive Burmese pythons in the Florida Everglades
err2026-02-01
err0
PREAI
errShrestha, Ayusha; Schwarz, Jasper W.; Feng, Kurtis H.; Spencer, Mckayla M.; Adhikari, Aastha; Amwe, Obed O.; Sacharia, Rita G.; O'hanlon, Bradley; Denagamage, Thomas; Weyna, Alisia A. W.; Nemeth, Nicole M.; Holmes, Edward C.; Allison, Andrew B.
errShare
errSave
Genomic features associated with sustained mammalian transmission of avian influenza A viruses
err2026-01-27
err0
PREAI
errYongtao Ye; Huiping Shuai; Yi Song; Marcus Ho-Hin Shum; David K. Smith; Haogao Gu; Huachen Zhu; Joseph T. Wu; Nicola S. Lewis; Francesco Bonfante; Edward C. Holmes; Malik Peiris; Leo Lit-Man Poon; Yi Guan; Tommy Tsan-Yuk Lam
errShare
errSave
Limited effect of short- to mid-term storage conditions on an Australian farmland soil RNA virome
err2026-01-01
err1
PREAI
errSadiq, Sabrina; Xue, PeiPei; Tang, Yijia; Du, Mingming; Van Brussel, Kate; McBratney, Alex B.; Holmes, Edward C.; Minasny, Budiman
errShare
errSave
Initiation of a coronavirus vaccine library
errVaccine
IF3.5
err2025-12-20
err0
PREAI
errDory Kovacs; Gurpreet Brar; Simon J. Anthony; Lin-Fa Wang; Edward C. Holmes; Linda J. Saif; Volker Gerdts; Leo Poon; Stanley Perlman; Joris Vandeputte; Christian Drosten; Heather Louise Wells; Javier Castillo-Olivares; Trevor Brasel; Timothy Endy; Ann-Muriel Steff; Georges Thiry; Nadia Cohen
errShare
errSave
Reemergence of yellow fever virus in forest and periurban settings in Brazil
err2025-12-15
err0
errOAAI
errValnete das Graças Dantas Andrade; Talita Émile Ribeiro Adelino; Vagner Fonseca; Keldenn Melo Farias Moreno; Luiz Marcelo Ribeiro Tomé; Luiz Augusto Pereira; Debora Glenda Lima de La-Roque; Ana Maria Bispo de Filippis; Daniel Garkauskas Ramos; Dario Brock Ramalho; Kátia Cristina de Lima Furtado; Gleissy Adriane Lima Borges; Livia Caricio Martins; Livia C. V. Frutuoso; Ludmila Oliveira Lamounier; Natália Rocha Guimarães; Patrícia Miriam Sayuri Sato Barros; Priscila Souza de Almeida; Paulo Eduardo de Souza da Silva; Rodrigo Giesbrecht Pinheiro; Rodrigo Guerino Stabeli; Shirley Moreira da Silva Chagas; Sílvia Helena Sousa Pietra Pedroso; Simone Kashima; Solange Gonçalves Penante; Marília Santini de Oliveira; Vinicius Lemes da Silva; Wesley C. Van Voorhis; Edward C. Holmes; José Lourenço; Felipe Campos de Melo Iani; Alberto Simões Jorge Júnior; Marta Giovanetti; Luiz Carlos Junior Alcantara
errShare
errSave
Infectome analysis of small mammals in Southern China reveals pathogen ecology and emerging risks
err2025-12-12
err0
errOAAI
errGenyang Xin; Daxi Wang; Xin Zhang; Qingquan Cen; Minwu Peng; Yuqi Liao; Jing Wang; Shijia Le; Jinxia Cheng; Wei-chen Wu; Xin Hou; Gengyan Luo; Qinyu Gou; Jianbin Kong; Zhu Pan; Dongqing Li; Shipei Gan; An Chen; Hailong Zhao; Peibo Shi; Zirui Ren; Weiqi Zhao; Jiajun Liu; Penghui Jia; Changyun Sun; Wenqing Lin; Jun Wu; Guopeng Kuang; Jingdiao Chen; Junhua Li; Edward C. Holmes; Ziqing Deng; Mang Shi
errShare
errSave
The risk of human- and mammal-infecting tick-borne viruses in northwest China and adjacent countries
err2025-12-02
err0
errOAAI
errHong Zhou; Hengcong Liu; Yun-Xiao Wang; Shanshan Zhao; Moujian Guo; Mingxue Cui; Jianjun Chen; Juan Li; Suwen Wang; Xudong Zhang; Jiaqi Qin; Ziman Lv; Zhenghai Ma; Ruiling Zhang; Bin Zhang; Wen Zheng; Jingkai Ji; Tianze Wang; Edward C. Holmes; Yuan-Zhi Wang; Weifeng Shi
errShare
errSave
The Pandemic Respiratory Virus Epidemiological Surveillance Trial - A Self-swab Surveillance System for Respiratory Viruses Nested Within FluTracking
err2025-12-01
err0
PREAI
errEsneau, Camille; Boettiger, David; Leask, Sarah; Bryant, Nathan E.; Niessen, Natalie; McVernon, Jodie; Marcato, Adrian; Carlson, Sandra; Browne, Stuart; Thomas, Rejoy; Holmes, Edward C.; Hajkowicz, Krispin; Tilbrook, Lynelle; Moon, Nathan; Dalton, Craig; Bartlett, Nathan W.; Davis, Joshua S.
errShare
errSave
Extensive diversity of unusual microorganisms associated with severe pneumonia in kidney transplant recipients
err2025-11-01
err0
PREAI
errLv, Jia-Xin; Pei, Yuan-Yuan; Yang, Cheng; Liu, Xiang; Ju, Min-Jie; Holmes, Edward C.; Chen, Yan-Mei; Zhu, Tong-Yu; Zhang, Yong-Zhen
errShare
errSave
Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave
err2025-09-09
err0
errOAAI
errLambisia, Arnold W.; Katama, Esther N.; Moraa, Edidah; Mwita, John M.; Gallagher, Katherine; Mutunga, Martin; Nyale, Emily; Omungala, Joan; Mwanga, Mike; Murunga, Nickson; Nyiro, Joyce; Nyagwange, James; Sande, Charles; Bejon, Philip; Githinji, George; Dellicour, Simon; Phan, My V. T.; Cotten, Matthew; Ochola-Oyier, L. Isabella; Holmes, Edward C.; Agoti, Charles N.
errShare
errSave
Extensive cross-species transmission of pathogens and antibiotic resistance genes in mammals neglected by public health surveillance
errCell
IF42.5
err2025-08-26
err0
PREAI
errYuqi Shi; Yuxing Li; Haipeng Li; Ayidana Haerheng; Vanessa R. Marcelino; Meng Lu; Philippe Lemey; Jia Tang; Yuhai Bi; John H.-O. Pettersson; Jon Bohlin; Joon Klaps; Zuowei Wu; Wenbo Wan; Bowen Sun; Mei Kang; Edward C. Holmes; Na He; Shuo Su
errShare
errSave
Recurrent integration of domestic cat hepatitis B virus DNA near feline CCNE1 supports an oncogenic role in hepatocellular carcinoma in cats
err2025-07-16
err0
errOAAI
errJoão P. Cavasin; Min-Chun Chen; Harout Ajoyan; Melanie J. Dobromylskyj; Wei-Hsiang Huang; Mason Jager; Kate Van Brussel; Rebecca Rockett; Omid Nekouei; Penny Watson; Jason Bestwick; Yan Ru Choi; Jonathan A. Lidbury; John M. Cullen; Edward Holmes; Jörg M. Steiner; Thomas Tu; Julia A. Beatty
errShare
errSave
SegFinder: an automated tool for identifying complete RNA virus genome segments through co-occurrence in multiple sequenced samples
err2025-07-01
err0
errOAAI
errLiu, Xue; Kong, Jianbin; Shan, Yongtao; Yang, Ziyue; Miao, Jiafan; Pan, Yuanfei; Luo, Tianyang; Shi, Zhiyuan; Wang, Yingmei; Gou, Qinyu; Yang, Chunhui; Li, Hanzong; Li, Chunmei; Li, Shaochuan; Zhang, Xu; Sun, Yanni; Holmes, Edward C.; Guo, Deyin; Shi, Mang
errShare
errSave