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D

Daniel E. Milkie

Howard Hughes Medical Institute

29H-index
63Paper Count
1.1WCitation Count
Published Papers 24
Publication Date
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A multimodal adaptive optical microscope for in vivo imaging from molecules to organisms
errNature Methods
IF32.1
err2026-05-22
err0
errOAAI
errTian-Ming Fu; Gaoxiang Liu; Daniel E. Milkie; Xiongtao Ruan; Frederik Görlitz; Yu Shi; Valentina Ferro; Nikita S. Divekar; Wei Wang; Harrison M. York; Velat Kilic; Matthew Mueller; Yajie Liang; Timothy A. Daugird; Maria Jose Gacha-Garay; Kathryn A. Larkin; Rebecca C. Adikes; Nathanael Harrison; Cyna Shirazinejad; Samara Williams; Jamison L. Nourse; Shu-Hsien Sheu; Liang Gao; Tongchao Li; Chandrani Mondal; Kemal Achour; Wilmene Hercule; Daniel R. Stabley; Kevin Emmerich; Peng Dong; David G. Drubin; Zhe J. Liu; Jeff S. Mumm; Minoru Koyama; Alison N. Killilea; Jose Javier Bravo-Cordero; C. Dirk Keene; Liqun Luo; Tomas Kirchhausen; Medha M. Pathak; Senthil Arumugam; James K. Nuñez; Ruixuan Gao; David Q. Matus; Benjamin L. Martin; Ian A. Swinburne; Eric Betzig; Wesley R. Legant; Srigokul Upadhyayula
errShare
errSave
Unstructured transcription factor interactions enable emergent specificity
errScience
IF45.8
err2026-03-19
err0
PREAI
errAbrar A. Abidi; Claudia Cattoglio; Natalie N. Tang; Vinson B. Fan; Gina M. Dailey; Amir D. Hay; Prasanthi Kunamaneni; Daniel E. Milkie; Xavier Darzacq; Eric Betzig; Robert Tjian; Thomas G. W. Graham
errShare
errSave
Mesoscale volumetric fluorescence imaging at nanoscale resolution by photochemical sectioning
errScience
IF45.8
err2025-10-16
err0
PREAI
errWei Wang; Xiongtao Ruan; Gaoxiang Liu; Daniel E. Milkie; Wenping Li; Eric Betzig; Srigokul Upadhyayula; Ruixuan Gao
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errSave
Fourier-based three-dimensional multistage transformer for aberration correction in multicellular specimens
errNature Methods
IF32.1
err2025-10-01
err0
errOAAI
errThayer Alshaabi; Daniel E. Milkie; Gaoxiang Liu; Cyna Shirazinejad; Jason L. Hong; Kemal Achour; Frederik Görlitz; Ana Milunovic-Jevtic; Cat Simmons; Ibrahim S. Abuzahriyeh; Erin Hong; Samara Erin Williams; Nathanael Harrison; Evan Huang; Eun Seok Bae; Alison N. Killilea; Ian A. Swinburne; David G. Drubin; Srigokul Upadhyayula; Eric Betzig
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errSave
Image processing tools for petabyte-scale light sheet microscopy data
errNATURE METHODS
IF32.1
err2024-10-17
err0
errOAAI
errRuan, Xiongtao; Mueller, Matthew; Liu, Gaoxiang; Goerlitz, Frederik; Fu, Tian-Ming; Milkie, Daniel E.; Lillvis, Joshua L.; Kuhn, Alexander; Chong, Johnny Gan; Hong, Jason Li; Herr, Chu Yi Aaron; Hercule, Wilmene; Nienhaus, Marc; Killilea, Alison N.; Betzig, Eric; Upadhyayula, Srigokul
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errSave
Smart lattice light-sheet microscopy for imaging rare and complex cellular events
errNATURE METHODS
IF32.1
err2024-01-02
err12
errOAAI
errShi, Yu; Tabet, Jimmy S.; Milkie, Daniel E.; Daugird, Timothy A.; Yang, Chelsea Q.; Ritter, Alex T.; Giovannucci, Andrea; Legant, Wesley R.
errShare
errSave
Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator
errNEURON
IF15
err2023-05-01
err28
errOAAI
errAbdelfattah, Ahmed S.; Zheng, Jihong; Singh, Amrita; Huang, Yi-Chieh; Reep, Daniel; Tsegaye, Getahun; Tsang, Arthur; Arthur, Benjamin J.; Rehorova, Monika; Olson, Carl V. L.; Shuai, Yichun; Zhang, Lixia; Fu, Tian -Ming; Milkie, Daniel E.; Moya, Maria V.; Weber, Timothy D.; Lemire, Andrew L.; Baker, Christopher A.; Falco, Natalie; Zheng, Qinsi; Grimm, Jonathan B.; Yip, Mighten C.; Walpita, Deepika; Chase, Martin; Campagnola, Luke; Murphy, Gabe J.; Wong, Allan M.; Forest, Craig R.; Mertz, Jerome; Economo, Michael N.; Turner, Glenn C.; Koyama, Minoru; Lin, Bei-Jung; Betzig, Eric; Novak, Ondrej; Lavis, Luke D.; Svoboda, Karel; Konf, Wyatt; Chen, Tsai-Wen; Schreiter, Eric R.; Hasseman, Jeremy P.; Kolb, Ilya
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errSave
Characterization, comparison, and optimization of lattice light sheets
errSCIENCE ADVANCES
IF12.5
err2023-03-31
err15
errOAAI
errLiu, Gaoxiang; Ruan, Xiongtao; Milkie, Daniel E.; Gorlitz, Frederik; Mueller, Matthew; Hercule, Wilmene; Killilea, Alison; Betzig, Eric; Upadhyayula, Srigokul
errShare
errSave
Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy
errELIFE
IF0
err2022-10-26
err17
errOAAI
errLillvis, Joshua L.; Otsuna, Hideo; Ding, Xiaoyu; Pisarev, Igor; Kawase, Takashi; Colonell, Jennifer; Rokicki, Konrad; Goina, Cristian; Gao, Ruixuan; Hu, Amy; Wang, Kaiyu; Bogovic, John; Milkie, Daniel E.; Meienberg, Linus; Mensh, Brett D.; Boyden, Edward S.; Saalfeld, Stephan; Tillberg, Paul W.; Dickson, Barry J.; Louis, Matthieu
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errSave
An adaptive optics module for deep tissue multiphoton imaging in vivo
errNATURE METHODS
IF32.1
err2021-10-04
err60
errOAAI
errRodriguez, Cristina; Chen, Anderson; Rivera, Jose A.; Mohr, Manuel A.; Liang, Yajie; Natan, Ryan G.; Sun, Wenzhi; Milkie, Daniel E.; Bifano, Thomas G.; Chen, Xiaoke; Ji, Na
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errSave
High-density three-dimensional localization microscopy across large volumes
errNATURE METHODS
IF32.1
err2016-03-07
err228
errOAAI
errLegant, Wesley R.; Shao, Lin; Grimm, Jonathan B.; Brown, Timothy A.; Milkie, Daniel E.; Avants, Brian B.; Lavis, Luke D.; Betzig, Eric
errShare
errSave
Multiplexed aberration measurement for deep tissue imaging in vivo
errNATURE METHODS
IF32.1
err2014-08-17
err117
errOAAI
errWang, Chen; Liu, Rui; Milkie, Daniel E.; Sun, Wenzhi; Tan, Zhongchao; Kerlin, Aaron; Chen, Tsai-Wen; Kim, Douglas S.; Ji, Na
errShare
errSave
Rapid adaptive optical recovery of optimal resolution over large volumes
errNATURE METHODS
IF32.1
err2014-04-13
err241
errOAAI
errWang, Kai; Milkie, Daniel E.; Saxena, Ankur; Engerer, Peter; Misgeld, Thomas; Bronner, Marianne E.; Mumm, Jeff; Betzig, Eric
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errSave
Direct phase measurement in zonal wavefront reconstruction using multidither coherent optical adaptive technique
errOPTICS EXPRESS
IF3.3
err2014-01-16
err30
errOAAI
errLiu, Rui; Milkie, Daniel E.; Kerlin, Aaron; MacLennan, Bryan; Ji, Na
errShare
errSave
Pupil-segmentation-based adaptive optical microscopy with full-pupil illumination
errOPTICS LETTERS
IF3.3
err2011-10-25
err57
PREAI
errMilkie, Daniel E.; Betzig, Eric; Ji, Na
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errSave
Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination
errNATURE METHODS
IF32.1
err2011-03-04
err1.0K
errOAAI
errPlanchon, Thomas A.; Gao, Liang; Milkie, Daniel E.; Davidson, Michael W.; Galbraith, James A.; Galbraith, Catherine G.; Betzig, Eric
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errSave
Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues
errNATURE METHODS
IF32.1
err2009-12-27
err381
PREAI
errJi, Na; Milkie, Daniel E.; Betzig, Eric
errShare
errSave
Simultaneous Block Copolymer and Magnetic Nanoparticle Assembly in Nanocomposite Films
errMACROMOLECULES
IF5.2
err2009-02-03
err72
PREAI
errXu, Chen; Ohno, Kohji; Ladmiral, Vincent; Milkie, Daniel E.; Kikkawa, James M.; Composto, Russell J.
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errSave
Carbon nanotube aerogels
errADVANCED MATERIALS
IF26.8
err2007-02-01
err553
PREAI
errBryning, Mateusz B.; Milkie, Daniel E.; Islam, Mohammad F.; Hough, Lawrence A.; Kikkawa, James M.; Yodh, Arjun G.
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errSave
Measurement of chiral-dependent magnetic anisotropy in carbon nanotubes
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2006-12-21
err29
PREAI
errTorrens, Omar N.; Milkie, Daniel E.; Ban, Han Y.; Zheng, Ming; Onoa, G. Bibiana; Gierke, Timothy D.; Kikkawa, James M.
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Robert Tjian
H-index: 150 · Papers: 479
K
Karel Svoboda
H-index: 132 · Papers: 408
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罗立群 (Liqun Luo)
H-index: 115 · Papers: 426
M
Marianne Bronner‐Fraser
H-index: 109 · Papers: 649
A
Arjun G. Yodh
H-index: 105 · Papers: 864
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