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D

Diwakar Shukla

University of Illinois at Urbana-Champaign

42H-index
277Paper Count
6.7KCitation Count
Published Papers 97
Publication Date
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ESMDynamic: Fast and accurate prediction of protein dynamic contact maps from single sequences
errNature Communications
IF15.7
err2026-08-11
err0
errOAAI
errDiego E. Kleiman; Jiangyan Feng; Zhengyuan Xue; Diwakar Shukla
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errSave
Solvent Environment Influences Molecular Conformation and Electron Transport in Peptides
errThe Journal of Physical Chemistry Letters
IF0
err2026-05-17
err0
PREAI
errRajarshi Samajdar; Hassan Nadeem; Neil Moghe; Diwakar Shukla; Charles M. Schroeder
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errSave
Dynamic Mechanism for Subtype Selectivity of Endocannabinoids
errJournal of Biological Chemistry
IF3.9
err2026-04-08
err0
errOAAI
errSoumajit Dutta; Lawrence Zhao; Diwakar Shukla
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errSave
How Minor Sequence Changes Enable Mechanistic Diversity in MFS Transporters? An Atomic-Level Rationale for Symport Emergence in NarU
errJournal of Chemical Information and Modeling
IF5.3
err2026-02-06
err0
PREAI
errTanner J. Dean; Jiangyan Feng; Diwakar Shukla
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errSave
Learning physical interactions to compose biological large language models
errCommunications Chemistry
IF6.2
err2026-01-07
err0
errOAAI
errJoseph D. Clark; Tanner J. Dean; Diwakar Shukla
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errSave
Active learning-guided optimization of cell-free biosensors for lead testing in drinking water
errNature Communications
IF15.7
err2025-12-20
err0
errOAAI
errBrenda M. Wang; Nicole Chiang; Holly M. Ekas; Dylan M. Brown; Garrett Dildine; Tyler J. Lucci; Siyuan Feng; Vanessa Bly; Jean-François Gaillard; Julius B. Lucks; Ashty S. Karim; Diwakar Shukla; Michael C. Jewett
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errSave
Feeding from the sun—Successes and prospects in bioengineering photosynthesis for food security
errCell
IF42.5
err2025-11-26
err0
PREAI
errStephen P. Long; Yu Wang; Elizabete Carmo-Silva; Amanda P. Cavanagh; Martin C. Jonikas; Johannes Kromdijk; Benedict M. Long; Amy Marshall-Colón; Diwakar Shukla; Robert H. Wilson; Xin-Guang Zhu; Elizabeth A. Ainsworth
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errSave
Characterization of binding kinetics and intracellular signaling of new psychoactive substances targeting cannabinoid receptor using transition-based reweighting method
errELIFE
IF0
err2025-11-03
err0
PREAI
errDutta, Soumajit; Shukla, Diwakar
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errSave
Enzyme specificity prediction using cross attention graph neural networks
errNature
IF48.5
err2025-10-08
err0
PREAI
errHaiyang Cui; Yufeng Su; Tanner J. Dean; Tianhao Yu; Zhengyi Zhang; Jian Peng; Diwakar Shukla; Huimin Zhao
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errSave
Structural Basis for Negative Regulation of ABA Signaling by ROP11 GTPase
errJournal of Chemical Information and Modeling
IF5.3
err2025-09-18
err0
errOAAI
errChuankai Zhao; Hassan Nadeem; Diwakar Shukla
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errSave
AlphaFold-Guided Bespoke Gene Editing Enhances Field-Grown Soybean Oil Contents
errADVANCED SCIENCE
IF14.1
err2025-05-14
err0
errOAAI
errWang, J; Zhang, L; Wang, SD; Wang, X; Li, SN; Gong, PP; Bai, MY; Paul, A; Tvedt, N; Ren, HR; Yang, MX; Zhang, ZH; Zhou, SD; Sun, JY; Wu, XJ; Kuang, HQ; Du, ZH; Dong, YH; Shi, XL; Li, MN; Shukla, D; Yan, L; Guan, YF
errShare
errSave
Investigating the Structure-Function Relationships of Fluorinated Interfaces for PFAS Capture and Electrochemically-Mediated Release
errADVANCED FUNCTIONAL MATERIALS
IF19
err2025-04-29
err0
errOAAI
errSantiago, AR; Dutta, A; Wu, JC; Yin, S; Lee, YW; Hou, CH; Shukla, D; Su, X
errShare
errSave
Molecular insights into the elevator-type mechanism of the cyanobacterial bicarbonate transporter BicA
errBIOPHYSICAL JOURNAL
IF3.1
err2025-01-01
err0
PREAI
errChan, Matthew C.; Alfawaz, Yazeed; Paul, Arnav; Shukla, Diwakar
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errSave
Substrate prediction for RiPP biosynthetic enzymes via masked language modeling and transfer learning
errDIGITAL DISCOVERY
IF5.6
err2025-01-01
err0
errOAAI
errClark, Joseph D.; Mi, Xuenan; Mitchell, Douglas A.; Shukla, Diwakar
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errSave
Energetics of substrate transport in proton-dependent oligopeptide transporters
errCOMMUNICATIONS CHEMISTRY
IF6.2
err2024-12-31
err0
errOAAI
errSelvam, Balaji; Chiang, Nicole; Shukla, Diwakar
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errSave
Cyclopamine modulates smoothened receptor activity in a binding position dependent manner
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-09-28
err0
errOAAI
errKim, Kihong; Bansal, Prateek D.; Shukla, Diwakar
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errSave
Substrate interactions guide cyclase engineering and lasso peptide diversification
errNATURE CHEMICAL BIOLOGY
IF13.7
err2024-09-11
err2
PREAI
errBarrett, Susanna E.; Yin, Song; Jordan, Peter; Brunson, John K.; Gordon-Nunez, Jessica; da Cruz, Gabriella Costa Machado; Rosario, Christopher; Okada, Bethany K.; Anderson, Kelsey; Pires, Thomas A.; Wang, Ruoyang; Shukla, Diwakar; Burk, Mark J.; Mitchell, Douglas A.
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errSave
The Arabidopsis AtSWEET13 transporter discriminates sugars by selective facial and positional substrate recognition
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-06-24
err3
errOAAI
errWeigle, Austin T.; Shukla, Diwakar
errShare
errSave
Structure-function analysis of plant G-protein regulatory mechanisms identifies key Gα-RGS protein interactions
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2024-05-01
err2
errOAAI
errTorres-Rodriguez, Maria Daniela; Lee, Soon Goo; Choudhury, Swarup Roy; Paul, Rabindranath; Selvam, Balaji; Shukla, Diwakar; Jez, Joseph M.; Pandey, Sona
errShare
errSave
Functional regulation of aquaporin dynamics by lipid bilayer composition
errNATURE COMMUNICATIONS
IF15.7
err2024-02-28
err3
errOAAI
errNguyen, Anh T. P.; Weigle, Austin T.; Shukla, Diwakar
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errSave

Research Directions

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Co-authors
Cooperation Journals
M
Mark Stitt
H-index: 150 · Papers: 578
B
Benoı̂t Roux
H-index: 128 · Papers: 723
S
Stephen P. Long
H-index: 123 · Papers: 574
A
Asrar B. Malik
H-index: 116 · Papers: 823
J
Jonathan P. Lynch
H-index: 115 · Papers: 397
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