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Alexis Battle

johns hopkins university

61H-index
225Paper Count
2.5WCitation Count
Published Papers 59
Publication Date
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Integrative multiomic analysis identifies transcription factors and target proteins in renal cell carcinoma
errCommunications Biology
IF5.1
err2026-08-05
err0
errOAAI
errSurya B. Chhetri; Timothy D. Winter; Mitchell J. Machiela; Kevin M. Brown; Alexis Battle; Mark P. Purdue; Stephen J. Chanock; Diptavo Dutta
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errSave
Beyond the baseline: mapping the context-specific regulatory landscape of disease
errTrends in Genetics
IF16.3
err2026-03-12
err0
errOAAI
errYoav Gilad; Alexis Battle
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errSave
A comparison of computational methods for expression forecasting
errGenome Biology
IF9.4
err2025-11-18
err0
errOAAI
errEric Kernfeld; Yunxiao Yang; Joshua S. Weinstock; Alexis Battle; Patrick Cahan
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errSave
Transcriptome-wide association studies at cell-state level using single-cell eQTL data
errCell Genomics
IF9
err2025-11-03
err0
errOAAI
errGuanghao Qi; Eardi Lila; Zhicheng Ji; Ali Shojaie; Alexis Battle; Wei Sun
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errSave
Genetic determinants and genomic consequences of non-leukemogenic somatic point mutations
errNature Communications
IF15.7
err2025-10-16
err0
errOAAI
errJoshua S. Weinstock; Sharjeel A. Chaudhry; Maria Ioannou; Maria Viskadourou; Paula Reventun; Yasminka A. Jakubek; L. Alexander Liggett; Cecelia Laurie; Jai G. Broome; Alyna Khan; Kent D. Taylor; Xiuqing Guo; Patricia A. Peyser; Eric Boerwinkle; Nathalie Chami; Eimear E. Kenny; Ruth J. Loos; Bruce M. Psaty; Russell P. Tracy; Jennifer A. Brody; Jeong H. Yun; Michael H. Cho; Ramachandran S. Vasan; Sharon L. Kardia; Jennifer A. Smith; Laura M. Raffield; Aurelian Bidulescu; Emily C. O’Brien; Mariza de Andrade; Jerome I. Rotter; Stephen S. Rich; Russell P. Tracy; Yii Der Ida Chen; C. Charles. Gu; Chao A. Hsiung; Charles Kooperberg; Bernhard Haring; Rami Nassir; Rasika Mathias; Alex Reiner; Vijay G. Sankaran; Charles J. Lowenstein; Thomas W. Blackwell; Goncalo R. Abecasis; Albert V. Smith; Hyun M. Kang; Pradeep Natarajan; Siddhartha Jaiswal; Alexander Bick; Wendy S. Post; Paul Scheet; Paul Auer; Theodoros Karantanos; Alexis Battle; Marios Arvanitis
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errSave
Sparse matrix factorization robust to sample sharing across GWASs reveals interpretable genetic components
erramerican journal of human genetics
IF0
err2025-07-28
err0
errOAAI
errAshton R. Omdahl; Joshua S. Weinstock; Rebecca Keener; Surya B. Chhetri; Marios Arvanitis; Alexis Battle
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errSave
Transcriptomic signatures of rare variant impacts across sex and the X chromosome
errHuman Genetics and Genomics Advances
IF3.6
err2025-05-31
err0
errOAAI
errRachel A. Ungar; Taibo Li; Nikolai G. Vetr; Nicole Ersaro; Alexis Battle; Stephen B. Montgomery
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errSave
Prioritization of causal genes from genome-wide association studies by Bayesian data integration across loci
errplos biology
IF3.6
err2025-01-07
err0
errOAAI
errMousavi, Zeinab; Arvanitis, Marios; Duong, Thuyvy; Brody, Jennifer A.; Battle, Alexis; Sotoodehnia, Nona; Shojaie, Ali; Arking, Dan E.; Bader, Joel S.
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errSave
Cell type and dynamic state govern genetic regulation of gene expression in heterogeneous differentiating cultures
errCELL GENOMICS
IF9
err2024-12-01
err1
errOAAI
errPopp, Joshua M.; Rhodes, Katherine; Jangi, Radhika; Li, Mingyuan; Barr, Kenneth; Tayeb, Karl; Battle, Alexis; Gilad, Yoav
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errSave
Functional characterization of GWAS findings highlights the protective role of REST against atherosclerosis
errCIRCULATION
IF38.6
err2024-11-12
err0
PREAI
errViskadourou, Maria; Reventun, Paula; Chaudhry, Sharjeel; Alcharani, Nunzio; Sanz, Pablo Toledano; Gastelum, Carlos Villapudua; Lopez-Cecetaite, Gabriel; Fennell, Abigail; An, Roujin; Osburn, William; McCallion, Andrew; Battle, Alexis; Lowenstein, Charles; Arvanitis, Marios
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errSave
Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease
errCELL GENOMICS
IF9
err2024-11-01
err0
errOAAI
errWeinstock, Joshua S.; Arce, Maya M.; Freimer, Jacob W.; Ota, Mineto; Marson, Alexander; Battle, Alexis; Pritchard, Jonathan K.
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errSave
Association between lipoprotein particle concentration and size and progression of coronary plaque: the MACS Longitudinal Coronary CT angiography study
errEUROPEAN HEART JOURNAL
IF35.6
err2024-10-28
err0
PREAI
errQuispe, R.; Arvanitis, M.; Brown, T.; Haberlen, S.; Witt, M.; Palella, F.; Magnani, J.; Whelton, S.; Budoff, M.; Battle, A.; Post, W.
errShare
errSave
Circulating Blood Plasma Profiling Reveals Proteomic Signature and a Causal Role for SVEP1 in Sudden Cardiac Death
errCIRCULATION-GENOMIC AND PRECISION MEDICINE
IF5.5
err2024-10-01
err0
PREAI
errDuong, Thuyvy; Austin, Thomas R.; Brody, Jennifer A.; Shojaie, Ali; Battle, Alexis; Bader, Joel S.; Hong, Yun Soo; Ballantyne, Christie M.; Coresh, Josef; Gerszten, Robert E.; Tracy, Russell P.; Psaty, Bruce M.; Sotoodehnia, Nona; Arking, Dan E.
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errSave
Genome-wide large-scale multi-trait analysis characterizes global patterns of pleiotropy and unique trait-specific variants
errNATURE COMMUNICATIONS
IF15.7
err2024-08-14
err0
errOAAI
errQi, Guanghao; Chhetri, Surya B.; Ray, Debashree; Dutta, Diptavo; Battle, Alexis; Bhattacharjee, Samsiddhi; Chatterjee, Nilanjan
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errSave
Transcriptome data are insufficient to control false discoveries in regulatory network inference
errCELL SYSTEMS
IF7.7
err2024-08-01
err1
errOAAI
errKernfeld, Eric; Keener, Rebecca; Cahan, Patrick; Battle, Alexis
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errSave
Enhancing Care for Older Adults and Dementia Patients With Large Language Models: Proceedings of the National Institute on Aging-Artificial Intelligence & Technology Collaboratory for Aging Research Symposium
errJOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES
IF3.8
err2024-07-13
err0
PREAI
errAbadir, Peter M.; Battle, Alexis; Walston, Jeremy D.; Chellappa, Rama
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errSave
The histone methyltransferase KMT2D mediates subtype-specific transcriptional regulation and therapeutic response in prostate cancer
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errKittane, Srushti; Ladewig, Erik; Li, Taibo; Love, Jillian; Arruabarrena-Aristorena, Amaia; Guo, Xinyu; Sallaku, Mirna; Garcia-Martinez, Liliana; Blawski, Ryan; Sanz, Javier Carmona; Simpkins, Christopher; Chen, Wanlu; Vokshi, Bujamin; Zhao, Peihua; Kelkar, Nachiket; Baldino, Laura; Kalemi, Ingrid; Castel, Pau; Cocco, Emiliano; Morey, Lluis; Sawyers, Charles; Ji, Hongkai; Scaltriti, Maurizio; Battle, Alexis; Leslie, Christina; Eneda, Wouter Karthaus
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Artificial intelligence and technology collaboratories: Empowering innovation in AI plus AgeTech
errJOURNAL OF THE AMERICAN GERIATRICS SOCIETY
IF4.5
err2024-02-26
err2
errOAAI
errLi, Rose M.; Abadir, Peter M.; Battle, Alexis; Chellappa, Rama; Choudhry, Niteesh K.; Demiris, George; Ganesan, Deepak; Karlawish, Jason; Moore, Jason H.; Walston, Jeremy D.
errShare
errSave
Artificial Intelligence and Technology Collaboratories: Innovating aging research and Alzheimer's care
errALZHEIMERS & DEMENTIA
IF11.1
err2024-02-07
err4
errOAAI
errAbadir, Peter; Oh, Esther; Chellappa, Rama; Choudhry, Niteesh; Demiris, George; Ganesan, Deepak; Karlawish, Jason; Marlin, Benjamin; Li, Rose M.; Dehak, Najim; Arbaje, Alicia; Unberath, Mathias; Cudjoe, Thomas; Chute, Christopher; Moore, Jason H.; Phan, Phillip; Samus, Quincy; Schoenborn, Nancy L.; Battle, Alexis; Walston, Jeremy D.
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errSave
SURGE: uncovering context-specific genetic-regulation of gene expression from single-cell RNA sequencing using latent-factor models
errGENOME BIOLOGY
IF9.4
err2024-01-22
err2
errOAAI
errStrober, Benjamin J.; Tayeb, Karl; Popp, Joshua; Qi, Guanghao; Gordon, M. Grace; Perez, Richard; Ye, Chun Jimmie; Battle, Alexis
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errSave

Research Directions

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Co-authors
Cooperation Journals
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Luigi Ferrucci
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王军 (Jun Wang)
H-index: 222 · Papers: 3.2K
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Nicholas G. Martin
H-index: 221 · Papers: 2.8K
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