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On the path to reference genomes for all biodiversity: laboratory protocols and lessons learned from processing over 2,000 species in the Sanger Tree of Life Howard, Caroline; Denton, Amy; Jackson, Benjamin W.; Bates, Adam; Jay, Jessie; Yatsenko, Halyna; Raman, Priyanka Sethu; Thomas, Abitha; Oatley, Graeme; do Amaral, Raquel Vionette; Goktan, Zeynep Ene; Gomez, Juan Pablo Narvaez; Clayton Lucey, Isabelle; Sinclair, Elizabeth; Quail, Michael A.; Blaxter, Mark; Howe, Kerstin; Lawniczak, Mara K. N. Share Save
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Haplotype-specific assembly of shattered chromosomes in esophageal adenocarcinomas Ijaz, Jannat; Harry, Edward; Raine, Keiran; Menzies, Andrew; Beal, Kathryn; Quail, Michael A.; Zumalave, Sonia; Jung, Hyunchul; Coorens, Tim H. H.; Lawson, Andrew R. J.; Leongamornlert, Daniel; Francies, Hayley E.; Garnett, Mathew J.; Ning, Zemin; Campbell, Peter J. Share Save
Somatic evolution of marine transmissible leukemias in the common cockle, Cerastoderma edule Bruzos, Alicia L.; Santamarina, Martin; Garcia-Souto, Daniel; Diaz, Seila; Rocha, Sara; Zamora, Jorge; Lee, Yunah; Vina-Feas, Alejandro; Quail, Michael A.; Otero, Iago; Pequeno-Valtierra, Ana; Temes, Javier; Rodriguez-Castro, Jorge; Aramburu, Leyre; Vidal-Capon, Andre; Villanueva, Antonio; Costas, Damian; Rodriguez, Rosana; Prieto, Tamara; Tomas, Laura; Alvarino, Pilar; Alonso, Juana; Cao, Asuncion; Iglesias, David; Carballal, Maria J.; Amaral, Ana M.; Balseiro, Pablo; Calado, Ricardo; El Khalfi, Bouchra; Izagirre, Urtzi; de Montaudouin, Xavier; Pade, Nicolas G.; Probert, Ian; Ricardo, Fernando; Ruiz, Pamela; Skazina, Maria; Smolarz, Katarzyna; Pasantes, Juan J.; Villalba, Antonio; Ning, Zemin; Ju, Young Seok; Posada, David; Demeulemeester, Jonas; Baez-Ortega, Adrian; Tubio, Jose M. C. Share Save
NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource Dicks, Jo; Fazal, Mohammed-Abbas; Oliver, Karen; Grayson, Nicholas E.; Turnbull, Jake D.; Bane, Evangeline; Burnett, Edward; Deheer-Graham, Ana; Holroyd, Nancy; Kaushal, Dorota; Keane, Jacqueline; Langridge, Gemma; Lomax, Jane; McGregor, Hannah; Picton, Steve; Quail, Michael; Singh, Deepak; Tracey, Alan; Korlach, Jonas; Russell, Julie E.; Alexander, Sarah; Parkhill, Julian Share Save
Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm Doyle, Stephen R.; Tracey, Alan; Laing, Roz; Holroyd, Nancy; Bartley, David; Bazant, Wojtek; Beasley, Helen; Beech, Robin; Britton, Collette; Brooks, Karen; Chaudhry, Umer; Maitland, Kirsty; Martinelli, Axel; Noonan, Jennifer D.; Paulini, Michael; Quail, Michael A.; Redman, Elizabeth; Rodgers, Faye H.; Salle, Guillaume; Shabbir, Muhammad Zubair; Sankaranarayanan, Geetha; Wit, Janneke; Howe, Kevin L.; Sargison, Neil; Devaney, Eileen; Berriman, Matthew; Gilleard, John S.; Cotton, James A. Share Save
The mutational signature profile of known and suspected human carcinogens in mice Riva, Laura; Pandiri, Arun R.; Li, Yun Rose; Droop, Alastair; Hewinson, James; Quail, Michael A.; Iyer, Vivek; Shepherd, Rebecca; Herbert, Ronald A.; Campbell, Peter J.; Sills, Robert C.; Alexandrov, Ludmil B.; Balmain, Allan; Adams, David J. Share Save
Low-frequency variation in TP53 has large effects on head circumference and intracranial volume Haworth, Simon; Shapland, Chin Yang; Hayward, Caroline; Prins, Bram P.; Felix, Janine F.; Medina-Gomez, Carolina; Rivadeneira, Fernando; Wang, Carol; Ahluwalia, Tarunveer S.; Vrijheid, Martine; Guxens, Monica; Sunyer, Jordi; Tachmazidou, Ioanna; Walter, Klaudia; Iotchkova, Valentina; Jackson, Andrew; Cleal, Louise; Huffmann, Jennifer; Min, Josine L.; Sass, Laerke; Timmers, Paul R. H. J.; Al Turki, Saeed; Anderson, Carl A.; Anney, Richard; Antony, Dinu; Artigas, Maria Soler; Ayub, Muhammad; Bala, Senduran; Barrett, Jeffrey C.; Barroso, Ines; Beales, Phil; Bentham, Jamie; Bhattacharya, Shoumo; Birney, Ewan; Blackwood, Douglas; Bobrow, Martin; Bochukova, Elena; Bolton, Patrick F.; Bounds, Rebecca; Boustred, Chris; Breen, Gerome; Calissano, Mattia; Carss, Keren; Charlton, Ruth; Chatterjee, Krishna; Chen, Lu; Ciampi, Antonio; Cirak, Sebahattin; Clapham, Peter; Clement, Gail; Coates, Guy; Cocca, Massimiliano; Collier, David A.; Cosgrove, Catherine; Cox, Tony; Craddock, Nick; Crooks, Lucy; Curran, Sarah; Curtis, David; Daly, Allan; Danecek, Petr; Day, Ian N. M.; Day-Williams, Aaron; Dominiczak, Anna; Down, Thomas; Du, Yuanping; Dunham, Ian; Durbin, Richard; Edkins, Sarah; Ekong, Rosemary; Ellis, Peter; Evans, David M.; Farooqi, I. Sadaf; Fitzpatrick, David R.; Flicek, Paul; Floyd, James; Foley, A. Reghan; Franklin, Christopher S.; Futema, Marta; Gallagher, Louise; Gaunt, Tom R.; Geihs, Matthias; Geschwind, Daniel; Greenwood, Celia M. T.; Griffin, Heather; Grozeva, Detelina; Guo, Xiaosen; Guo, Xueqin; Gurling, Hugh; Hart, Deborah; Hendricks, Audrey E.; Holmans, Peter; Howie, Bryan; Huang, Jie; Huang, Liren; Hubbard, Tim; Humphries, Steve E.; Hurles, Matthew E.; Hysi, Pirro; Jackson, David K.; Jamshidi, Yalda; Joyce, Chris; Karczewski, Konrad J.; Kaye, Jane; Keane, Thomas; Kemp, John P.; Kennedy, Karen; Kent, Alastair; Keogh, Julia; Khawaja, Farrah; van Kogelenberg, Margriet; Kolb-Kokocinski, Anja; Lachance, Genevieve; Langford, Cordelia; Lawson, Daniel; Lee, Irene; Lek, Monkol; Li, Rui; Li, Yingrui; Liang, Jieqin; Lin, Hong; Liu, Ryan; Lonnqvist, Jouko; Lopes, Luis R.; Lopes, Margarida; MacArthur, Daniel G.; Mangino, Massimo; Marchini, Jonathan; Marenne, Gaelle; Maslen, John; Mathieson, Iain; McCarthy, Shane; McGuffin, Peter; McIntosh, Andrew M.; McKechanie, Andrew G.; McQuillin, Andrew; Memari, Yasin; Metrustry, Sarah; Migone, Nicola; Mitchison, Hannah M.; Moayyeri, Alireza; Morris, Andrew; Morris, James; Muddyman, Dawn; Muntoni, Francesco; Northstone, Kate; O'Donovan, Michael C.; O'Rahilly, Stephen; Onoufriadis, Alexandros; Oualkacha, Karim; Owen, Michael J.; Palotie, Aarno; Panoutsopoulou, Kalliope; Parker, Victoria; Parr, Jeremy R.; Paternoster, Lavinia; Paunio, Tiina; Payne, Felicity; Payne, Stewart J.; Perry, John R. B.; Pietilainen, Olli; Plagnol, Vincent; Pollitt, Rebecca C.; Porteous, David J.; Povey, Sue; Quail, Michael A.; Quaye, Lydia; Raymond, F. Lucy; Rehnstrom, Karola; Richards, J. Brent; Ridout, Cheryl K.; Ring, Susan; Ritchie, Graham R. S.; Roberts, Nicola; Robinson, Rachel L.; Savage, David B.; Scambler, Peter; Schiffels, Stephan; Schmidts, Miriam; Schoenmakers, Nadia; Scott, Richard H.; Semple, Robert K.; Serra, Eva; Sharp, Sally I.; Shaw, Adam; Shihab, Hashem A.; Shin, So-Youn; Skuse, David; Small, Kerrin S.; Smee, Carol; Smith, Blair H.; Soranzo, Nicole; Southam, Lorraine; Spasic-Boskovic, Olivera; Spector, Timothy D.; St Clair, David; Stalker, Jim; Stevens, Elizabeth; Sun, Jianping; Surdulescu, Gabriela; Suvisaari, Jaana; Syrris, Petros; Taylor, Rohan; Tian, Jing; Tobin, Martin D.; Valdes, Ana M.; Vandersteen, Anthony M.; Vijayarangakannan, Parthiban; Visscher, Peter M.; Wain, Louise V.; Walters, James T. R.; Wang, Guangbiao; Wang, Jun; Wang, Yu; Ward, Kirsten; Wheeler, Eleanor; Whyte, Tamieka; Williams, Hywel J.; Williamson, Kathleen A.; Wilson, Crispian; Wilson, Scott G.; Wong, Kim; Xu, ChangJiang; Yang, Jian; Zhang, Feng; Zhang, Pingbo; Zheng, Hou-Feng; Smith, George Davey; Fisher, Simon E.; Wilson, James F.; Cole, Tim J.; Fernandez-Orth, Dietmar; Bonnelykke, Klaus; Bisgaard, Hans; Pennell, Craig E.; Jaddoe, Vincent W. V.; Dedoussis, George; Timpson, Nicholas; Zeggini, Eleftheria; Vitart, Veronique; St Pourcain, Beate Share Save
Repeat associated mechanisms of genome evolution and function revealed by the &ITMus caroli&IT and &ITMus pahari&IT genomes Thybert, David; Roller, Masa; Navarro, Fabio C. P.; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janousek, Vaclav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C.; Laukaitis, Christina M.; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A.; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J.; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M.; Odom, Duncan T.; Flicek, Paul Share Save
Copy number variation arising from gene conversion on the human Y chromosome Shi, Wentao; Massaia, Andrea; Louzada, Sandra; Banerjee, Ruby; Hallast, Pille; Chen, Yuan; Bergstrom, Anders; Gu, Yong; Leonard, Steven; Quail, Michael A.; Ayub, Qasim; Yang, Fengtang; Tyler-Smith, Chris; Xue, Yali Share Save
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms Giordano, Francesca; Aigrain, Louise; Quail, Michael A.; Coupland, Paul; Bonfield, James K.; Davies, Robert M.; Tischler, German; Jackson, David K.; Keane, Thomas M.; Li, Jing; Yue, Jia-Xing; Liti, Gianni; Durbin, Richard; Ning, Zemin Share Save
Genome-wide transposon screening and quantitative insertion site sequencing for cancer gene discovery in mice Friedrich, Mathias J.; Rad, Lena; Bronner, Iraad F.; Strong, Alexander; Wang, Wei; Weber, Julia; Mayho, Matthew; Ponstingl, Hannes; Engleitner, Thomas; Grove, Carolyn; Pfaus, Anja; Saur, Dieter; Cadinanos, Juan; Quail, Michael A.; Vassiliou, George S.; Liu, Pentao; Bradley, Allan; Rad, Roland Share Save
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The genomic basis of parasitism in the Strongyloides clade of nematodes Hunt, Vicky L.; Tsai, Isheng J.; Coghlan, Avril; Reid, Adam J.; Holroyd, Nancy; Foth, Bernardo J.; Tracey', Alan; Cotton', James A.; Stanley, Eleanor J.; Beasley, Helen; Bennett, Hayley M.; Brooks, Karen; Harsha, Bhavana; Kajitani, Rei; Kulkarni, Arpita; Harbecke, Dorothee; Nagayasu, Eiji; Nichol, Sarah; Ogura, Yoshitoshi; Quail, Michael A.; Randle, Nadine; Xia, Dong; Brattig, Norbert W.; Soblik, Hanns; Ribeiro, Diogo M.; Sanchez-Flores, Alejandro; Hayashi, Tetsuya; Itoh, Takehiko; Denver, Dee R.; Grant, Warwick; Stoltzfus, Jonathan D.; Lok, James B.; Murayama, Haruhiko; Wastling, Jonathan; Streit, Adrian; Kikuchi, Taisei; Viney, Mark; Berriman, Matthew Share Save
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