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Michael Hawrylycz

Allen Institute for Brain Science

66H-index
215Paper Count
5.1WCitation Count
Published Papers 44
Publication Date
Continuous cell-type diversification in mouse visual cortex development
errNature
IF48.5
err2025-11-05
err0
errOAAI
errYuan Gao; Cindy T. J. van Velthoven; Changkyu Lee; Emma D. Thomas; Rémi Mathieu; Angela P. Ayala; Stuard Barta; Darren Bertagnolli; Jazmin Campos; Trangthanh Cardenas; Daniel Carey; Tamara Casper; Anish Bhaswanth Chakka; Rushil Chakrabarty; Megan Chiang; Lindsey Ching; Michael Clark; Marie J. Desierto; Rebecca Ferrer; Jessica Gloe; Jeff Goldy; Nathan Guilford; Junitta Guzman; Carliana R. Halterman; Samantha D. Hastings; Daniel Hirschstein; Windy Ho; Katelyn James; Zoe Juneau; Naomi Martin; Rachel McCue; Emma Meyerdierks; Amanda C. Mitchell; Josh S. Nagra; Beagan Nguy; Thuc Nghi Nguyen; Paul Olsen; Alana A. Oyama; Nick Pena; Jacob Quon; Qingzhong Ren; Augustin Ruiz; Nadiya V. Shapovalova; Josef Sulc; Amy Torkelson; Alex Tran; Herman Tung; Nasmil Valera Cuevas; Justin Wang; Jeanelle Ariza; Delissa A. M. McMillen; Jack Waters; Michael Kunst; Kara Ronellenfitch; Boaz Levi; Michael J. Hawrylycz; Chelsea Pagan; Nick Dee; Kimberly A. Smith; Bosiljka Tasic; Zizhen Yao; Hongkui Zeng
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Accelerating biomedical discoveries in brain health through transformative neuropathology of aging and neurodegeneration
errNeuron
IF15
err2025-07-18
err0
errOAAI
errMelissa E. Murray; Colin Smith; Vilas Menon; C. Dirk Keene; Ed Lein; Michael Hawrylycz; Adriano Aguzzi; Brett Benedetti; Katja Brose; Kelsey Caetano-Anolles; Maria Inmaculada Cobos Sillero; John F. Crary; Philip L. De Jager; Arline Faustin; Margaret E. Flanagan; Ozgun Gokce; Seth G.N. Grant; Lea T. Grinberg; David A. Gutman; Elizabeth M.C. Hillman; Zhi Huang; David J. Irwin; David T. Jones; Alifiya Kapasi; Celeste M. Karch; Walter T. Kukull; Tammaryn Lashley; Edward B. Lee; Thomas Lehner; Laura Parkkinen; Maria Pedersen; Dominique Pritchett; Matthew H. Rutledge; Julie A. Schneider; William W. Seeley; Claire E. Shepherd; Tara L. Spires-Jones; Judith A. Steen; Margaret Sutherland; Sanja Vickovic; Bin Zhang; David J. Stewart; Michael J. Keiser; Jacob W. Vogel; Brittany N. Dugger; Hemali Phatnani
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Neuronal diversity and stereotypy at multiple scales through whole brain morphometry
err2024-11-26
err0
errOAAI
errLiu, Yufeng; Jiang, Shengdian; Zhao, Sujun; Li, Yingxin; Zhixi, Yun; Zhao, Zuo-Han; Zhang, Lingli; Wang, Gaoyu; Chen, Xin; Manubens-Gil, Linus; Hang, Yuning; Gong, Qiaobo; Li, Yuanyuan; Qian, Penghao; Qu, Lei; Garcia-Forn, Marta; Wang, Wei; De Rubeis, Silvia; Wu, Zhuhao; Osten, Pavel; Gong, Hui; Hawrylycz, Michael; Mitra, Partha; Dong, Hongwei; Luo, Qingming; Ascoli, Giorgio A.; Zeng, Hongkui; Liu, Lijuan; Peng, Hanchuan
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SEA-AD is a multimodal cellular atlas and resource for Alzheimer's disease
err2024-10-14
err0
PREAI
errHawrylycz, Michael; Kaplan, Eitan S.; Travaglini, Kyle J.; Gabitto, Mariano I.; Miller, Jeremy A.; Ng, Lydia; Close, Jennie L.; Hodge, Rebecca D.; Long, Brian; Mollenkopf, Tyler; Mufti, Shoaib; Gatto, Nicole M.; Larson, Eric B.; Crane, Paul K.; Grabowski, Thomas J.; Keene, C. Dirk; Lein, Ed S.
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BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets (vol 20, pg 824, 2023)
err2024-08-02
err0
errOAAI
errManubens-Gil, Linus; Zhou, Zhi; Chen, Hanbo; Ramanathan, Arvind; Liu, Xiaoxiao; Liu, Yufeng; Bria, Alessandro; Gillette, Todd; Ruan, Zongcai; Yang, Jian; Radojevic, Miroslav; Zhao, Ting; Cheng, Li; Qu, Lei; Liu, Siqi; Bouchard, Kristofer E.; Gu, Lin; Cai, Weidong; Ji, Shuiwang; Roysam, Badrinath; Wang, Ching-Wei; Yu, Hongchuan; Sironi, Amos; Iascone, Daniel Maxim; Zhou, Jie; Bas, Erhan; Conde-Sousa, Eduardo; Aguiar, Paulo; Li, Xiang; Li, Yujie; Nanda, Sumit; Wang, Yuan; Muresan, Leila; Fua, Pascal; Ye, Bing; He, Hai-yan; Staiger, Jochen F.; Peter, Manuel; Cox, Daniel N.; Simonneau, Michel; Oberlaender, Marcel; Jefferis, Gregory; Ito, Kei; Gonzalez-Bellido, Paloma; Kim, Jinhyun; Rubel, Edwin; Cline, Hollis T.; Zeng, Hongkui; Nern, Aljoscha; Chiang, Ann-Shyn; Yao, Jianhua; Roskams, Jane; Livesey, Rick; Stevens, Janine; Liu, Tianming; Dang, Chinh; Guo, Yike; Zhong, Ning; Tourassi, Georgia; Hill, Sean; Hawrylycz, Michael; Koch, Christof; Meijering, Erik; Ascoli, Giorgio A.; Peng, Hanchuan
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Linking Neurogenetics and Functional Connectivity in Autism
err2023-11-01
err0
PREAI
errHawrylycz, Michael; Nickl-Jockschat, Thomas
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Whole human-brain mapping of single cortical neurons for profiling morphological diversity and stereotypy
err2023-10-13
err9
errOAAI
errHan, Xiaofeng; Guo, Shuxia; Ji, Nan; Li, Tian; Liu, Jian; Ye, Xiangqiao; Wang, Yi; Yun, Zhixi; Xiong, Feng; Rong, Jing; Liu, Di; Ma, Hui; Wang, Yujin; Huang, Yue; Zhang, Peng; Wu, Wenhao; Ding, Liya; Hawrylycz, Michael; Lein, Ed; Ascoli, Giorgio A.; Xie, Wei; Liu, Lijuan; Zhang, Liwei; Peng, Hanchuan
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BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets
err2023-04-17
err22
errOAAI
errManubens-Gil, Linus; Zhou, Zhi; Chen, Hanbo; Ramanathan, Arvind; Liu, Xiaoxiao; Liu, Yufeng; Bria, Alessandro; Gillette, Todd; Ruan, Zongcai; Yang, Jian; Radojevic, Miroslav; Zhao, Ting; Cheng, Li; Qu, Lei; Liu, Siqi; Bouchard, Kristofer E.; Gu, Lin; Cai, Weidong; Ji, Shuiwang; Roysam, Badrinath; Wang, Ching-Wei; Yu, Hongchuan; Sironi, Amos; Iascone, Daniel Maxim; Zhou, Jie; Bas, Erhan; Conde-Sousa, Eduardo; Aguiar, Paulo; Li, Xiang; Li, Yujie; Nanda, Sumit; Wang, Yuan; Muresan, Leila; Fua, Pascal; Ye, Bing; He, Hai-yan; Staiger, Jochen F.; Peter, Manuel; Cox, Daniel N.; Simonneau, Michel; Oberlaender, Marcel; Jefferis, Gregory; Ito, Kei; Gonzalez-Bellido, Paloma; Kim, Jinhyun; Rubel, Edwin; Cline, Hollis T.; Zeng, Hongkui; Nern, Aljoscha; Chiang, Ann-Shyn; Yao, Jianhua; Roskams, Jane; Livesey, Rick; Stevens, Janine; Liu, Tianming; Dang, Chinh; Guo, Yike; Zhong, Ning; Tourassi, Georgia; Hill, Sean; Hawrylycz, Michael; Koch, Christof; Meijering, Erik; Ascoli, Giorgio A.; Peng, Hanchuan
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Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia
err2022-04-04
err10
errOAAI
errSu-Feher, Linda; Rubin, Anna N.; Silberberg, Shanni N.; Catta-Preta, Rinaldo; Lim, Kenneth J.; Ypsilanti, Athena R.; Zdilar, Iva; McGinnis, Christopher S.; McKinsey, Gabriel L.; Rubino, Thomas E., Jr.; Hawrylycz, Michael J.; Thompson, Carol; Gartner, Zev J.; Puelles, Luis; Zeng, Hongkui; Rubenstein, John L. R.; Nord, Alex S.
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Toward next-generation primate neuroscience: A collaboration-based strategic plan for integrative neuroimaging
errNEURON
IF15
err2022-01-01
err18
errOAAI
errMilham, Michael; Petkov, Chris; Belin, Pascal; Ben Hamed, Suliann; Evrard, Henry; Fair, Damien; Fox, Andrew; Froudist-Walsh, Sean; Hayashi, Takuya; Kastner, Sabine; Klink, Chris; Majka, Piotr; Mars, Rogier; Messinger, Adam; Poirier, Colline; Schroeder, Charles; Shmuel, Amir; Silva, Afonso C.; Vanduffel, Wim; Van Essen, David C.; Wang, Zheng; Roe, Anna Wang; Wilke, Melanie; Xu, Ting; Aarabi, Mohammad Hadi; Adolphs, Ralph; Ahuja, Aarit; Alvand, Ashkan; Amiez, Celine; Autio, Joonas; Azadi, Reza; Baeg, Eunha; Bai, Ruiliang; Bao, Pinglei; Basso, Michele; Behel, Austin K.; Bennett, Yvonne; Bernhardt, Boris; Biswal, Bharat; Boopathy, Sethu; Boretius, Susann; Borra, Elena; Boshra, Rober; Buffalo, Elizabeth; Cao, Long; Cavanaugh, James; Celine, Amiez; Chavez, Gianfranco; Chen, Li Min; Chen, Xiaodong; Cheng, Luqi; Chouinard-Decorte, Francois; Clavagnier, Simon; Clery, Justine; Colcombe, Stan J.; Conway, Bevil; Cordeau, Melina; Coulon, Olivier; Cui, Yue; Dadarwal, Rakshit; Dahnke, Robert; Desrochers, Theresa; Deying, Li; Dougherty, Kacie; Doyle, Hannah; Drzewiecki, Carly M.; Duyck, Marianne; Arachchi, Wasana Ediri; Elorette, Catherine; Essamlali, Abdelhadi; Evans, Alan; Fajardo, Alfonso; Figueroa, Hector; Franco, Alexandre; Freches, Guilherme; Frey, Steve; Friedrich, Patrick; Fujimoto, Atsushi; Fukunaga, Masaki; Gacoin, Maeva; Gallardo, Guillermo; Gao, Lixia; Gao, Yang; Garside, Danny; Garza-Villarreal, Eduardo A.; Gaudet-Trafit, Maxime; Gerbella, Marzio; Giavasis, Steven; Glen, Daniel; Gomes, Ana Rita Ribeiro; Torrecilla, Sandra Gonzalez; Gozzi, Alessandro; Gulli, Roberto; Haber, Suzanne; Hadj-Bouziane, Fadila; Fujimoto, Satoka Hashimoto; Hawrylycz, Michael; He, Quansheng; He, Ye; Heuer, Katja; Hiba, Bassem; Hoffstaedter, Felix; Hong, Seok-Jun; Hori, Yuki; Hou, Yujie; Howard, Amy; de la Iglesia-Vaya, Maria; Ikeda, Takuro; Jankovic-Rapan, Lucija; Jaramillo, Jorge; Jedema, Hank P.; Jin, Hecheng; Jiang, Minqing; Jung, Benjamin; Kagan, Igor; Kahn, Itamar; Kiar, Gregory; Kikuchi, Yuki; Kilavik, Bjorg; Kimura, Nobuyuki; Klatzmann, Ulysse; Kwok, Sze Chai; Lai, Hsin-Yi; Lamberton, Franck; Lehman, Julia; Li, Pengcheng; Li, Xinhui; Li, Xinjian; Liang, Zhifeng; Liston, Conor; Little, Roger; Liu, Cirong; Liu, Ning; Liu, Xiaojin; Liu, Xinyu; Lu, Haidong; Loh, Kep Kee; Madan, Christopher; Magrou, Loic; Margulies, Daniel; Mathilda, Froesel; Mejia, Sheyla; Meng, Yao; Menon, Ravi; Meunier, David; Mitchell, A. J.; Mitchell, Anna; Murphy, Aidan; Mvula, Towela; Ortiz-Rios, Michael; Martinez, Diego Emanuel Ortuzar; Pagani, Marco; Palomero-Gallagher, Nicola; Pareek, Vikas; Perkins, Pierce; Ponce, Fernanda; Postans, Mark; Pouget, Pierre; Qian, Meizhen; Ramirez, Julian Bene; Raven, Erika; Restrepo, Isabel; Rima, Samy; Rockland, Kathleen; Rodriguez, Nadira Yusif; Roger, Elise; Hortelano, Eduardo Rojas; Rosa, Marcello; Rossi, Andrew; Rudebeck, Peter; Russ, Brian; Sakai, Tomoko; Saleem, Kadharbatcha S.; Sallet, Jerome; Sawiak, Stephen; Schaeffer, David; Schwiedrzik, Caspar M.; Seidlitz, Jakob; Sein, Julien; Sharma, Jitendra; Shen, Kelly; Sheng, Wei-an; Shi, Neo Sunhang; Shim, Won Mok; Simone, Luciano; Sirmpilatze, Nikoloz; Sivan, Virginie; Song, Xiaowei; Tanenbaum, Aaron; Tasserie, Jordy; Taylor, Paul; Tian, Xiaoguang; Toro, Roberto; Trambaiolli, Lucas; Upright, Nick; Vezoli, Julien; Vickery, Sam; Villalon, Julio; Wang, Xiaojie; Wang, Yufan; Weiss, Alison R.; Wilson, Charlie; Wong, Ting-Yat; Woo, Choong-Wan; Wu, Bichan; Xiao, Du; Xu, Augix Guohua; Xu, Dongrong; Zhou Xufeng; Yacoub, Essa; Ye, Ningrong; Ying, Zhang; Yokoyama, Chihiro; Yu, Xiongjie; Yue, Shasha; Lu Yuheng; Xin Yumeng; Zaldivar, Daniel; Zhang, Shaomin; Zhao, Yuguang; Zuo, Zhanguang
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Transcriptional network orchestrating regional patterning of cortical progenitors
err2021-12-17
err22
errOAAI
errYpsilanti, Athena R.; Pattabiraman, Kartik; Catta-Preta, Rinaldo; Golonzhka, Olga; Lindtner, Susan; Tang, Ke; Jones, Ian R.; Abnousi, Armen; Juric, Ivan; Hu, Ming; Shen, Yin; Dickel, Diane E.; Visel, Axel; Pennachio, Len A.; Hawrylycz, Michael; Thompson, Carol L.; Zeng, Hongkui; Barozzi, Iros; Nord, Alex S.; Rubenstein, John L.
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Cross-modal coherent registration of whole mouse brains
err2021-12-09
err47
errOAAI
errQu, Lei; Li, Yuanyuan; Xie, Peng; Liu, Lijuan; Wang, Yimin; Wu, Jun; Liu, Yu; Wang, Tao; Li, Longfei; Guo, Kaixuan; Wan, Wan; Ouyang, Lei; Xiong, Feng; Kolstad, Anna C.; Wu, Zhuhao; Xu, Fang; Zheng, Yefeng; Gong, Hui; Luo, Qingming; Bi, Guoqiang; Dong, Hongwei; Hawrylycz, Michael; Zeng, Hongkui; Peng, Hanchuan
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Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans
err2021-09-02
err40
errOAAI
errBakken, Trygve E.; van Velthoven, Cindy T. J.; Menon, Vilas; Hodge, Rebecca D.; Yao, Zizhen; Thuc Nghi Nguyen; Graybuck, Lucas T.; Horwitz, Gregory D.; Bertagnolli, Darren; Goldy, Jeff; Yanny, Anna Marie; Garren, Emma; Parry, Sheana; Casper, Tamara; Shehata, Soraya, I; Barkan, Eliza R.; Szafer, Aaron; Levi, Boaz P.; Dee, Nick; Smith, Kimberly A.; Sunkin, Susan M.; Bernard, Amy; Phillips, John; Hawrylycz, Michael J.; Koch, Christof; Murphy, Gabe J.; Lein, Ed; Zeng, Hongkui; Tasic, Bosiljka
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Consistent cross-modal identification of cortical neurons with coupled autoencoders
err2021-02-22
err24
errOAAI
errGala, Rohan; Budzillo, Agata; Baftizadeh, Fahimeh; Miller, Jeremy; Gouwens, Nathan; Arkhipov, Anton; Murphy, Gabe; Tasic, Bosiljka; Zeng, Hongkui; Hawrylycz, Michael; Sumbul, Uygar
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Common cell type nomenclature for the mammalian brain
err2020-12-29
err54
errOAAI
errMiller, Jeremy A.; Gouwens, Nathan W.; Tasic, Bosiljka; Collman, Forrest; van Velthoven, Cindy T. J.; Bakken, Trygve E.; Hawrylycz, Michael J.; Zeng, Hongkui; Lein, Ed S.; Bernard, Amy
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Single-cell transcriptomic evidence for dense intracortical neuropeptide networks
err2019-11-11
err102
errOAAI
errSmith, Stephen J.; Sumbul, Uygar; Graybuck, Lucas T.; Collman, Forrest; Seshamani, Sharmishtaa; Gala, Rohan; Gliko, Olga; Elabbady, Leila; Miller, Jeremy A.; Bakken, Trygve E.; Rossier, Jean; Yao, Zizhen; Lein, Ed; Zeng, Hongkui; Tasic, Bosiljka; Hawrylycz, Michael
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TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain
err2019-08-02
err39
errOAAI
errWang, Yimin; Li, Qi; Liu, Lijuan; Zhou, Zhi; Ruan, Zongcai; Kong, Lingsheng; Li, Yaoyao; Wang, Yun; Zhong, Ning; Chai, Renjie; Luo, Xiangfeng; Guo, Yike; Hawrylycz, Michael; Luo, Qingming; Gu, Zhongze; Xie, Wei; Zeng, Hongkui; Peng, Hanchuan
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Systematic generation of biophysically detailed models for diverse cortical neuron types
err2018-02-19
err89
errOAAI
errGouwens, Nathan W.; Berg, Jim; Feng, David; Sorensen, Staci A.; Zeng, Hongkui; Hawrylycz, Michael J.; Koch, Christof; Arkhipov, Anton
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Generalized leaky integrate-and-fire models classify multiple neuron types
err2018-02-19
err147
errOAAI
errTeeter, Corinne; Iyer, Ramakrishnan; Menon, Vilas; Gouwens, Nathan; Feng, David; Berg, Jim; Szafer, Aaron; Cain, Nicholas; Zeng, Hongkui; Hawrylycz, Michael; Koch, Christof; Mihalas, Stefan
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SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology
err2017-08-24
err5
errOAAI
errLong, Brian; Zhou, Zhi; Cetin, Ali; Ting, Jonathan; Gwinn, Ryder; Tasic, Bosiljka; Daigle, Tanya; Lein, Ed; Zeng, Hongkui; Saggau, Peter; Hawrylycz, Michael; Peng, Hanchuan
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