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J

Jonathan K. Pritchard

stanford university

118H-index
369Paper Count
12.7WCitation Count
Published Papers 120
Publication Date
Genome-scale perturb-seq in primary human CD4<sup>+</sup> T cells maps context-specific regulators of T cell programs and human immune traits
errCell
IF42.5
err2026-08-28
err0
errOAAI
errRonghui Zhu; Emma Dann; Jun Yan; Justine Reyes Retana; Ryunosuke Goto; Reese C. Guitche; Lillian Brixi; Mineto Ota; Austin Hartman; Theodore L. Roth; Ansuman T. Satpathy; Jonathan K. Pritchard; Alexander Marson
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Genetic variants affect diurnal glucose levels throughout the day
err2026-05-22
err0
errOAAI
errNasa Sinnott-Armstrong; Satu Strausz; Lea Urpa; Erik Abner; Josephine P. Johnson; Jesse Valliere; Teele Palumaa; Priit Palta; Hassan S. Dashti; Kyong-Mi Chang; Marijana Vujkovic; Mark Daly; Jonathan K. Pritchard; Richa Saxena; Samuel E. Jones; Hanna M. Ollila
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Regulatory network topology and the genetic architecture of gene expression
err2026-04-22
err0
errOAAI
errMatthew Aguirre; Jeffrey P. Spence; Guy Sella; Jonathan K. Pritchard
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Causal modelling of gene effects from regulators to programs to traits
errNature
IF48.5
err2025-12-10
err0
errOAAI
errMineto Ota; Jeffrey P. Spence; Tony Zeng; Emma Dann; Nikhil Milind; Alexander Marson; Jonathan K. Pritchard
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Specificity, length and luck drive gene rankings in association studies
errNature
IF48.5
err2025-11-05
err0
errOAAI
errJeffrey P. Spence; Hakhamanesh Mostafavi; Mineto Ota; Nikhil Milind; Tamara Gjorgjieva; Courtney J. Smith; Yuval B. Simons; Guy Sella; Jonathan K. Pritchard
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Simple scaling laws control the genetic architectures of human complex traits
err2025-10-13
err2
PREAI
errSimons, Yuval B.; Mostafavi, Hakhamanesh; Zhu, Huisheng; Smith, Courtney J.; Pritchard, Jonathan K.; Sella, Guy
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Ancient trans-species polymorphism at the Major Histocompatibility Complex in primates
err2025-09-12
err2
errOAAI
errFortier, Alyssa Lyn; Pritchard, Jonathan K.
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Investigating the Role of Neighborhood Socioeconomic Status and Germline Genetics on Prostate Cancer Risk
err2025-08-08
err0
errOAAI
errJonathan Judd; Jeffrey P. Spence; Jonathan K. Pritchard; Linda Kachuri; John S. Witte
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Haplotype analysis reveals pleiotropic disease associations in the HLA region
err2025-07-10
err0
errOAAI
errCourtney J. Smith; Satu Strausz; Jeffrey P. Spence; Hanna M. Ollila; Jonathan K. Pritchard
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Patient-reported outcomes as early warning signals of flare following drug cessation in rheumatoid arthritis
err2025-04-28
err0
PREAI
errGumber, Leher; Rayner, Fiona; Bigirumurame, Theophile; Dyke, Bernard; Melville, Andrew R.; Kerrigan, Sean; McGucken, Andrew; Naamane, Najib; Pritchard, Jonathan; Buckley, Christopher D.; Filer, Andrew; McInnes, Iain; Raza, Karim; Siebert, Stefan; Wason, James; Fai-Ng, Wan; Anderson, Amy E.; Isaacs, John D.; Baker, Kenneth F.; Pratt, Arthur G.
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Characterizing selection on complex traits through conditional frequency spectra
err2024-12-18
err1
PREAI
errPatel, Roshni A.; Weiss, Clemens L.; Zhu, Huisheng; Mostafavi, Hakhamanesh; Simons, Yuval B.; Spence, Jeffrey P.; Pritchard, Jonathan K.
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Invasive Treatment Strategy for Older Patients with Myocardial Infarction
err2024-11-07
err8
PREAI
errKunadian, V; Mossop, H.; Shields, C.; Bardgett, M.; Watts, P.; Teare, M. D.; Pritchard, J.; Adams-Hall, J.; Runnett, C.; Ripley, D. P.; Carter, J.; Quigley, J.; Cooke, J.; Austin, D.; Murphy, J.; Kelly, D.; McGowan, J.; Veerasamy, M.; Felmeden, D.; Contractor, H.; Mutgi, S.; Irving, J.; Lindsay, S.; Galasko, G.; Lee, K.; Sultan, A.; Dastidar, A. G.; Hussain, S.; Haq, I. U.; de Belder, M.; Denvir, M.; Flather, M.; Storey, R. F.; Newby, D. E.; Pocock, S. J.; Fox, K. A. A.
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Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease
err2024-11-01
err0
errOAAI
errWeinstock, Joshua S.; Arce, Maya M.; Freimer, Jacob W.; Ota, Mineto; Marson, Alexander; Battle, Alexis; Pritchard, Jonathan K.
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Diversity of ribosomes at the level of rRNA variation associated with human health and disease
err2024-09-01
err3
errOAAI
errRothschild, Daphna; Susanto, Teodorus Theo; Sui, Xin; Spence, Jeffrey P.; Rangan, Ramya; Genuth, Naomi R.; Sinnott-Armstrong, Nasa; Wang, Xiao; Pritchard, Jonathan K.; Barna, Maria
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Bayesian estimation of gene constraint from an evolutionary model with gene features
err2024-07-08
err6
errOAAI
errZeng, Tony; Spence, Jeffrey P.; Mostafavi, Hakhamanesh; Pritchard, Jonathan K.
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Stable population structure in Europe since the Iron Age, despite high mobility
err2024-01-30
err18
errOAAI
errAntonio, Margaret L.; Weiss, Clemens L.; Gao, Ziyue; Sawyer, Susanna; Oberreiter, Victoria; Moots, Hannah M.; Spence, Jeffrey P.; Cheronet, Olivia; Zagorc, Brina; Praxmarer, Elisa; Ozdogan, Kadir Toykan; Demetz, Lea; Gelabert, Pere; Fernandes, Daniel; Lucci, Michaela; Alihodzic, Timka; Amrani, Selma; Avetisyan, Pavel; Baillif-Ducros, Christele; Bedic, Zeljka; Bertrand, Audrey; Bilic, Maja; Bondioli, Luca; Borowka, Paulina; Botte, Emmanuel; Burmaz, Josip; Buzanic, Domagoj; Candilio, Francesca; Cvetko, Mirna; De Angelis, Daniela; Drnic, Ivan; Elschek, Kristian; Fantar, Mounir; Gaspari, Andrej; Gasperetti, Gabriella; Genchi, Francesco; Golubovic, Snezana; Hukelova, Zuzana; Jankauskas, Rimantas; Vuckovic, Kristina Jelincic; Jeremic, Gordana; Kaic, Iva; Kazek, Kevin; Khachatryan, Hamazasp; Khudaverdyan, Anahit; Kirchengast, Sylvia; Korac, Miomir; Kozlowski, Valerie; Kroslakova, Maria; Spalj, Dora Kusan; La Pastina, Francesco; Laguardia, Marie; Legrand, Sandra; Lelekovic, Tino; Leskovar, Tamara; Lorkiewicz, Wieslaw; Los, Dzeni; Silva, Ana Maria; Masaryk, Rene; Matijevic, Vinka; Cherifi, Yahia Mehdi Seddik; Meyer, Nicolas; Mikic, Ilija; Miladinovic-Radmilovic, Natasa; Zakic, Branka Milosevic; Nacouzi, Lina; Natuniewicz-Sekua, Magdalena; Nava, Alessia; Neugebauer-Maresch, Christine; Novacek, Jan; Osterholtz, Anna; Paige, Julianne; Paraman, Lujana; Pieri, Dominique; Pieta, Karol; Pop-Lazic, Stefan; Ruttkay, Matej; Sanader, Mirjana; Soltysiak, Arkadiusz; Sperduti, Alessandra; Pesterac, Tijana Stankovic; Teschler-Nicola, Maria; Teul, Iwona; Toncinic, Domagoj; Trapp, Julien; Vulovic, Dragana; Waliszewski, Tomasz; Walter, Diethard; Zivanovic, Milos; Filah, Mohamed el Mostefa; Causevic-Bully, Morana; Slaus, Mario; Boric, Dusan; Novak, Mario; Coppa, Alfredo; Pinhasi, Ron; Pritchard, Jonathan K.
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The functional impact of rare variation across the regulatory cascade
err2023-10-01
err3
errOAAI
errLi, Taibo; Ferraro, Nicole; Strober, Benjamin J.; Aguet, Francois; Kasela, Silva; Arvanitis, Marios; Ni, Bohan; Wiel, Laurens; Hershberg, Elliot; Ardlie, Kristin; Arking, Dan E.; Beer, Rebecca L.; Brody, Jennifer; Blackwell, Thomas W.; Clish, Clary; Gabriel, Stacey; Gerszten, Robert; Guo, Xiuqing; Gupta, Namrata; Johnson, W. Craig; Lappalainen, Tuuli; Lin, Henry J.; Liu, Yongmei; Nickerson, Deborah A.; Papanicolaou, George; Pritchard, Jonathan K.; Qasba, Pankaj; Shojaie, Ali; Smith, Josh; Sotoodehnia, Nona; Taylor, Kent D.; Tracy, Russell P.; Van den Berg, David; Wheeler, Matthew T.; Rich, Stephen S.; Rotter, Jerome I.; Battle, Alexis; Montgomery, Stephen B.
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Scaling the discrete-time Wright-Fisher model to biobank-scale datasets
err2023-09-19
err6
errOAAI
errSpence, Jeffrey P.; Zeng, Tony; Mostafavi, Hakhamanesh; Pritchard, Jonathan K.
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A genetic history of continuity and mobility in the Iron Age central Mediterranean
err2023-08-17
err7
errOAAI
errMoots, Hannah M.; Antonio, Margaret; Sawyer, Susanna; Spence, Jeffrey P.; Oberreiter, Victoria; Weiss, Clemens L.; Lucci, Michaela; Cherifi, Yahia Mehdi Seddik; La Pastina, Francesco; Genchi, Francesco; Praxmeier, Elisa; Zagorc, Brina; Cheronet, Olivia; Ozdogan, Kadir T.; Demetz, Lea; Amrani, Selma; Candilio, Francesca; De Angelis, Daniela; Gasperetti, Gabriella; Fernandes, Daniel; Gao, Ziyue; Fantar, Mounir; Coppa, Alfredo; Pritchard, Jonathan K.; Pinhasi, Ron
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On the number of genealogical ancestors tracing to the source groups of an admixed population
err2023-07-06
err4
errOAAI
errMooney, Jazlyn A.; Agranat-Tamir, Lily; Pritchard, Jonathan K.; Rosenberg, Noah A.
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