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R

Rui Oliveira

University of Coimbra

43H-index
245Paper Count
6.1KCitation Count
Published Papers 77
Publication Date
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Straight to the core: Intratumoral delivery of pitavastatin and miR-338–5p through lipid nanoparticles inhibits glioblastoma growth
errNano Today
IF10.9
err2025-12-03
err0
PREAI
errJoão Basso; José Sereno; Ana Miguel Matos; Rui Oliveira; Maria Luísa Ramos; Miguel Castelo-Branco; Ana Fortuna; Rui Vitorino; Carla Vitorino
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errSave
HYBpy: a web-based framework for hybrid modeling of biological systems
errDigital Chemical Engineering
IF4.1
err2025-12-02
err0
errOAAI
errJosé Pedreira; José Pinto; Daniel Gonçalves; Pedro Barahona; Rui Oliveira; Rafael S. Costa
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errSave
Bioprocess model-predictive control with physics-informed neural networks: Driving microbiome evolution toward high polyhydroxyalkanoates production capacity
errJournal of Process Control
IF3.9
err2025-11-21
err0
errOAAI
errMarta Catalão; José Pinto; Cristiana A.V. Torres; Filomena Freitas; Maria A.M. Reis; Rafael S. Costa; Rui Oliveira
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errSave
A Review of Intelligent Modeling for Microalgae Systems: Integrating Data Mining, Machine Learning, and Hybrid Approaches
errProcesses 2025, Vol. 13, Page 2956
IF2.8
err2025-10-01
err0
errOAAI
errGeovani R. Freitas; Sara Badenes; Rui Oliveira; Fernando G. Martins
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errSave
Incorporating first-principles information into hybrid modeling structures: Comparing hybrid semi-parametric models with Physics-Informed Recurrent Neural Networks
errCOMPUTERS & CHEMICAL ENGINEERING
IF3.9
err2025-05-15
err0
errOAAI
errJul-Rasmussen, Peter; Kumar, Monesh; Pinto, Jose; Oliveira, Rui; Liang, Xiaodong; Huusom, Jakob Kjobsted
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errSave
Deep hybrid modeling of a HEK293 process: Combining long short-term memory networks with first principles equations
errBIOTECHNOLOGY AND BIOENGINEERING
IF3.6
err2024-02-11
err7
errOAAI
errRamos, Joao R. C.; Pinto, Jose; Poiares-Oliveira, Gil; Peeters, Ludovic; Dumas, Patrick; Oliveira, Rui
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Upcycling of food waste streams to valuable biopigments pyocyanin and 1-hydroxyphenazine
errENZYME AND MICROBIAL TECHNOLOGY
IF3.7
err2023-12-01
err5
errOAAI
errPantelic, Lena; Bogojevic, Sanja Skaro; Vojnovic, Sandra; Oliveira, Rui; Lazic, Jelena; Ilic-Tomic, Tatjana; Milivojevic, Dusan; Nikodinovic-Runic, Jasmina
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From Shallow to Deep Bioprocess Hybrid Modeling: Advances and Future Perspectives
errFERMENTATION-BASEL
IF3.3
err2023-10-23
err5
errOAAI
errAgharafeie, Roshanak; Ramos, Joao Rodrigues Correia; Mendes, Jorge M.; Oliveira, Rui
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errSave
Hybrid Deep Modeling of a GS115 (Mut+) Pichia pastoris Culture with State-Space Reduction
errFERMENTATION-BASEL
IF3.3
err2023-07-08
err4
errOAAI
errPinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui
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errSave
A General Hybrid Modeling Framework for Systems Biology Applications: Combining Mechanistic Knowledge with Deep Neural Networks under the SBML Standard
errAI
IF5
err2023-03-01
err11
errOAAI
errPinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui
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errSave
Genome-scale modeling of Chinese hamster ovary cells by hybrid semi-parametric flux balance analysis
errBIOPROCESS AND BIOSYSTEMS ENGINEERING
IF3.6
err2022-10-16
err16
errOAAI
errRamos, Joao R. C.; Oliveira, Gil P.; Dumas, Patrick; Oliveira, Rui
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errSave
A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks
errCOMPUTERS & CHEMICAL ENGINEERING
IF3.9
err2022-09-01
err28
errOAAI
errPinto, Jose; Mestre, Mykaella; Ramos, J.; Costa, Rafael S.; Striedner, Gerald; Oliveira, Rui
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errSave
Recovery of pigments from Ulva rigida
errSEPARATION AND PURIFICATION TECHNOLOGY
IF9
err2021-01-01
err27
PREAI
errMartins, Margarida; Oliveira, Rui; Coutinho, Joao A. P.; Faustino, M. Amparo F.; Neves, M. Grata P. M. S.; Pinto, Diana C. G. A.; Ventura, Sonia P. M.
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errSave
A bootstrap-aggregated hybrid semi-parametric modeling framework for bioprocess development
errBIOPROCESS AND BIOSYSTEMS ENGINEERING
IF3.6
err2019-08-02
err35
PREAI
errPinto, Jose; de Azevedo, Cristiana Rodrigues; Oliveira, Rui; von Stosch, Moritz
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Pichia pastoris Alcohol Oxidase 1 (AOX1) Core Promoter Engineering by High Resolution Systematic Mutagenesis
errBIOTECHNOLOGY JOURNAL
IF3.1
err2017-11-22
err39
PREAI
errPortela, Rui M. C.; Vogl, Thomas; Ebner, Katharina; Oliveira, Rui; Glieder, Anton
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errSave
Modeling of the burst release from PLGA micro- and nanoparticles as function of physicochemical parameters and formulation characteristics
errINTERNATIONAL JOURNAL OF PHARMACEUTICS
IF5.2
err2017-10-01
err95
PREAI
errde Azevedo, Cristiana Rodrigues; von Stosch, Moritz; Costa, Mariana S.; Ramos, A. M.; Cardoso, M. Margarida; Danhier, Fabienne; Preat, Veronique; Oliveira, Rui
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errSave
Hybrid modeling of microbial exopolysaccharide (EPS) production: The case of Enterobacter A47
errJOURNAL OF BIOTECHNOLOGY
IF3.9
err2017-03-01
err4
PREAI
errMarques, Rodolfo; von Stosch, Moritz; Portela, Rui M. C.; Torres, Cristiana A. V.; Antunes, Silvia; Freitas, Filomena; Reis, Maria A. M.; Oliveira, Rui
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Synthetic Core Promoters as Universal Parts for Fine-Tuning Expression in Different Yeast Species
errACS SYNTHETIC BIOLOGY
IF3.9
err2016-12-14
err87
errOAAI
errPortela, Rui M. C.; Vogl, Thomas; Kniely, Claudia; Fischer, Jasmin E.; Oliveira, Rui; Glieder, Anton
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Hybrid metabolic flux analysis and recombinant protein prediction in Pichia pastoris X-33 cultures expressing a singlechain antibody fragment
errBIOPROCESS AND BIOSYSTEMS ENGINEERING
IF3.6
err2016-04-29
err14
PREAI
errIsidro, Ines A.; Portela, Rui M.; Clemente, Joao J.; Cunha, Antonio E.; Oliveira, Rui
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errSave
Hybrid modeling as a QbD/PAT tool in process development: an industrial E-coli case study
errBIOPROCESS AND BIOSYSTEMS ENGINEERING
IF3.6
err2016-02-15
err78
errOAAI
errvon Stosch, Moritz; Hamelink, Jan-Martijn; Oliveira, Rui
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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João A. P. Coutinho
H-index: 114 · Papers: 1.1K
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Jorge de Brito
H-index: 113 · Papers: 1.0K
V
Véronique Préat
H-index: 86 · Papers: 448
R
Richard D. Braatz
H-index: 86 · Papers: 862
K
Konrad Hungerbühler
H-index: 81 · Papers: 705
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