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Patrick Wincker

cea and cnrs and université paris-saclay

121H-index
692Paper Count
9.4WCitation Count
Published Papers 204
Publication Date
Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity
errNature
IF48.5
err2026-02-25
err0
errOAAI
errFabienne Wiederkehr; Lucas Paoli; Daniel Richter; Dora Racunica; Hans-Joachim Ruscheweyh; Martin Sperfeld; James O’Brien; Samuel Miravet-Verde; Alena B. Streiff; Jessica Ransome; Clara Chepkirui; Taylor Priest; Anna Sintsova; Guillem Salazar; Kalia S. I. Bistolas; Teresa Sawyer; Karine Labadie; Kim-Isabelle Mayer; Aude Perdereau; Maggie M. Reddy; Clémentine Moulin; Emilie Boissin; Guillaume Bourdin; Juliette Cailliau; Guillaume Iwankow; Julie Poulain; Sarah Romac; Serge Planes; Denis Allemand; Sylvain Agostini; Chris Bowler; Eric Douville; Didier Forcioli; Pierre E. Galand; Fabien Lombard; Pedro H. Oliveira; Olivier P. Thomas; Rebecca Vega Thurber; Romain Troublé; Christian R. Voolstra; Patrick Wincker; Maren Ziegler; Jörn Piel; Shinichi Sunagawa
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Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects
err2025-12-20
err0
errOAAI
errSophie Arnaud-Haond; Blandine Trouche; Cathy Liautard-Haag; Karine Alain; Johanne Aubé; François Bonhomme; Miriam I. Brandt; Annaëlle Caillarec-Joly; Marie-Anne Cambon; Florence Cornette; Valérie Cueff-Gauchard; Patrick Durand; Colomban de Vargas; Christine Felix; Sandra Fuchs; Babett Günther; Nicolas Henry; Stéphane Hourdez; Didier Jollivet; Anne-Sophie Le Port; Françoise Lesongeur; Loïs Maignien; Sophie Comtet-Marre; Marjolaine Matabos; Emmanuelle Omnes; Pierre Peyret; Florence Pradillon; Jozée Sarrazin; Clemens Schauberger; Adrien Tran Lu Y; Osvaldo Ulloa; Sandrine Vaz; Daniela Zeppili; Frédérique Viard; Frédérick Gavory; Shahinaz Gaz; Julie Guy; E’Krame Jacoby; Pedro H. Oliveira; Gaëlle Samson; Jean-Marc Aury; Patrick Wincker; Stéphane Pesant; Julie Poulain; Caroline Belser
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Transcriptomic response of the picoalga Pelagomonas calceolata to nitrogen availability: new insights into cyanate lyase function
err2025-03-01
err0
errOAAI
errGuerin, Nina; Seyman, Chloe; Orvain, Celine; Bertrand, Laurie; Gourvil, Priscillia; Probert, Ian; Vacherie, Benoit; Brun, Elodie; Magdelenat, Ghislaine; Labadie, Karine; Wincker, Patrick; Thurotte, Adrien; Carradec, Quentin
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Unraveling biogeographical patterns and environmental drivers of soil fungal diversity at the French national scale
errSOIL
IF4.3
err2024-04-11
err2
errOAAI
errDjemiel, Christophe; Dequiedt, Samuel; Horrigue, Walid; Bailly, Arthur; Lelievre, Melanie; Tripied, Julie; Guilland, Charles; Perrin, Solene; Comment, Gwendoline; Saby, Nicolas P. A.; Jolivet, Claudy; Bispo, Antonio; Boulonne, Line; Pierart, Antoine; Wincker, Patrick; Cruaud, Corinne; Maron, Pierre-Alain; Terrat, Sebastien; Ranjard, Lionel
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The defensome of complex bacterial communities
err2024-03-08
err7
errOAAI
errBeavogui, Angelina; Lacroix, Auriane; Wiart, Nicolas; Poulain, Julie; Delmont, Tom O.; Paoli, Lucas; Wincker, Patrick; Oliveira, Pedro H.
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Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats
err2024-02-05
err1
errOAAI
errMota, Ana Paula Zotta; Koutsovoulos, Georgios D.; Perfus-Barbeoch, Laetitia; Despot-Slade, Evelin; Labadie, Karine; Aury, Jean-Marc; Robbe-Sermesant, Karine; Bailly-Bechet, Marc; Belser, Caroline; Pere, Arthur; Rancurel, Corinne; Kozlowski, Djampa K.; Hassanaly-Goulamhoussen, Rahim; Da Rocha, Martine; Noel, Benjamin; Mestrovic, Nevenka; Wincker, Patrick; Danchin, Etienne G. J.
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Sea surface temperature reconstruction in the Pacific Ocean using multi-elemental proxy in Porites and Diploastrea corals: Application to Palau Archipelago
err2024-02-01
err1
PREAI
errCanesi, Marine; Douville, Eric; Montagna, Paolo; Bordier, Louise; Caquineau, Sandrine; Pons-Branchu, Edwige; Iwankow, Guillaume; Stolarski, Jaroslaw; Allemand, Denis; Planes, Serge; Moulin, Clementine; Lombard, Fabien; Bourdin, Guillaume; Trouble, Romain; Agostini, Sylvain; Banaigs, Bernard; Boissin, Emilie; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Flores, J. Michel; Forcioli, Didier; Furla, Paola; Gilson, Eric; Galand, Pierre E.; Pesant, Stephane; Sunagawa, Shinichi; Thomas, Olivier P.; Thurber, Rebecca Vega; Voolstra, Christian R.; Wincker, Patrick; Zoccola, Didier; Reynaud, Stephanie
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Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions
err2024-01-10
err5
errOAAI
errSchauberger, Clemens; Thamdrup, Bo; Lemonnier, Clarisse; Trouche, Blandine; Poulain, Julie; Wincker, Patrick; Arnaud-Haond, Sophie; Glud, Ronnie N.; Maignien, Lois
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Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments
err2023-12-22
err4
errOAAI
errTrouche, Blandine; Schauberger, Clemens; Bouderka, Feriel; Auguet, Jean-Christophe; Belser, Caroline; Poulain, Julie; Thamdrup, Bo; Wincker, Patrick; Arnaud-Haond, Sophie; Glud, Ronnie N.; Maignien, Lois
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Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation
err2023-09-02
err9
errOAAI
errSanz-Saez, Isabel; Sanchez, Pablo; Salazar, Guillem; Sunagawa, Shinichi; de Vargas, Colomban; Bowler, Chris; Sullivan, Matthew B.; Wincker, Patrick; Karsenti, Eric; Pedros-Alio, Carlos; Agusti, Susana; Gojobori, Takashi; Duarte, Carlos M.; Gasol, Josep M.; Sanchez, Olga; Acinas, Silvia G.
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Differences in carbonate chemistry up-regulation of long-lived reef-building corals
err2023-07-18
err6
errOAAI
errCanesi, Marine; Douville, Eric; Montagna, Paolo; Taviani, Marco; Stolarski, Jaroslaw; Bordier, Louise; Dapoigny, Arnaud; Coulibaly, Gninwoyo Eric Hermann; Simon, Anne-Catherine; Agelou, Mathieu; Fin, Jonathan; Metzl, Nicolas; Iwankow, Guillaume; Allemand, Denis; Planes, Serge; Moulin, Clementine; Lombard, Fabien; Bourdin, Guillaume; Trouble, Romain; Agostini, Sylvain; Banaigs, Bernard; Boissin, Emilie; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Flores, Michel; Forcioli, Didier; Furla, Paola; Gilson, Eric; Galand, Pierre E.; Pesant, Stephane; Sunagawa, Shinichi; Thomas, Olivier P.; Vega Thurber, Rebecca; Voolstra, Christian R.; Wincker, Patrick; Zoccola, Didier; Reynaud, Stephanie
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Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean
err2023-06-01
err19
errOAAI
errHochart, Corentin; Paoli, Lucas; Ruscheweyh, Hans-Joachim; Salazar, Guillem; Boissin, Emilie; Romac, Sarah; Poulain, Julie; Bourdin, Guillaume; Iwankow, Guillaume; Moulin, Clementine; Ziegler, Maren; Porro, Barbara; Armstrong, Eric J.; Hume, Benjamin C. C.; Aury, Jean-Marc; Pogoreutz, Claudia; Paz-Garcia, David A.; Nugues, Maggy M.; Agostini, Sylvain; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Douville, Eric; Flores, Michel; Forcioli, Didier; Furla, Paola; Gilson, Eric; Lombard, Fabien; Pesant, Stephane; Reynaud, Stephanie; Thomas, Olivier P.; Trouble, Romain; Wincker, Patrick; Zoccola, Didier; Allemand, Denis; Planes, Serge; Thurber, Rebecca Vega; Voolstra, Christian R.; Sunagawa, Shinichi; Galand, Pierre E.
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Diversity of the Pacific Ocean coral reef microbiome
err2023-06-01
err20
errOAAI
errGaland, Pierre E.; Ruscheweyh, Hans-Joachim; Salazar, Guillem; Hochart, Corentin; Henry, Nicolas; Hume, Benjamin C. C.; Oliveira, Pedro H.; Perdereau, Aude; Labadie, Karine; Belser, Caroline; Boissin, Emilie; Romac, Sarah; Poulain, Julie; Bourdin, Guillaume; Iwankow, Guillaume; Moulin, Clementine; Armstrong, Eric J.; Paz-Garcia, David A.; Ziegler, Maren; Agostini, Sylvain; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Douville, Eric; Flores, Michel; Forcioli, Didier; Furla, Paola; Gilson, Eric; Lombard, Fabien; Pesant, Stephane; Reynaud, Stephanie; Thomas, Olivier P.; Trouble, Romain; Zoccola, Didier; Voolstra, Christian R.; Thurber, Rebecca Vega; Sunagawa, Shinichi; Wincker, Patrick; Allemand, Denis; Planes, Serge
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Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals
err2023-06-01
err7
errOAAI
errRouan, Alice; Pousse, Melanie; Djerbi, Nadir; Porro, Barbara; Bourdin, Guillaume; Carradec, Quentin; Hume, Benjamin CC.; Poulain, Julie; Le-Hoang, Julie; Armstrong, Eric; Agostini, Sylvain; Salazar, Guillem; Ruscheweyh, Hans-Joachim; Aury, Jean-Marc; Paz-Garcia, David A.; McMinds, Ryan; Giraud-Panis, Marie-Josephe; Deshuraud, Romane; Ottaviani, Alexandre; Morini, Lycia Die; Leone, Camille; Wurzer, Lia; Tran, Jessica; Zoccola, Didier; Pey, Alexis; Moulin, Clementine; Boissin, Emilie; Iwankow, Guillaume; Romac, Sarah; de Vargas, Colomban; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; Douville, Eric; Flores, Michel; Reynaud, Stephanie; Thomas, Olivier P.; Trouble, Romain; Thurber, Rebecca Vega; Planes, Serge; Allemand, Denis; Pesant, Stephane; Galand, Pierre E.; Wincker, Patrick; Sunagawa, Shinichi; Rottinger, Eric; Furla, Paola; Voolstra, Christian R.; Forcioli, Didier; Lombard, Fabien; Gilson, Eric
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Pervasive tandem duplications and convergent evolution shape coral genomes
err2023-06-01
err12
errOAAI
errNoel, Benjamin; Denoeud, France; Rouan, Alice; Buitrago-Lopez, Carol; Capasso, Laura; Poulain, Julie; Boissin, Emilie; Pousse, Melanie; Da Silva, Corinne; Couloux, Arnaud; Armstrong, Eric; Carradec, Quentin; Cruaud, Corinne; Labadie, Karine; Le-Hoang, Julie; Tambutte, Sylvie; Barbe, Valerie; Moulin, Clementine; Bourdin, Guillaume; Iwankow, Guillaume; Romac, Sarah; Agostini, Sylvain; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Douville, Eric; Flores, J. Michel; Forcioli, Didier; Furla, Paola; Galand, Pierre E.; Lombard, Fabien; Pesant, Stephane; Reynaud, Stephanie; Sullivan, Matthew B.; Sunagawa, Shinichi; Thomas, Olivier P.; Trouble, Romain; Thurber, Rebecca Vega; Allemand, Denis; Planes, Serge; Gilson, Eric; Zoccola, Didier; Wincker, Patrick; Voolstra, Christian R.; Aury, Jean-Marc
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Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes
err2023-06-01
err13
errOAAI
errVeglia, Alex J.; Bistolas, Kalia S. I.; Voolstra, Christian R.; Hume, Benjamin C. C.; Ruscheweyh, Hans-Joachim; Planes, Serge; Allemand, Denis; Boissin, Emilie; Wincker, Patrick; Poulain, Julie; Moulin, Clementine; Bourdin, Guillaume; Iwankow, Guillaume; Romac, Sarah; Agostini, Sylvain; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Douville, Eric; Flores, Michel; Forcioli, Didier; Furla, Paola; Galand, Pierre E.; Gilson, Eric; Lombard, Fabien; Pesant, Stephane; Reynaud, Stephanie; Sunagawa, Shinichi; Thomas, Olivier P.; Trouble, Romain; Zoccola, Didier; Correa, Adrienne M. S.; Thurber, Rebecca L. Vega L.
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Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean
err2023-06-01
err9
errOAAI
errArmstrong, Eric J.; Le-Hoang, Julie; Carradec, Quentin; Aury, Jean-Marc; Noel, Benjamin; Hume, Benjamin C. C.; Voolstra, Christian R.; Poulain, Julie; Belser, Caroline; Paz-Garcia, David A.; Cruaud, Corinne; Labadie, Karine; Da Silva, Corinne; Moulin, Cle'mentine; Boissin, Emilie; Bourdin, Guillaume; Iwankow, Guillaume; Romac, Sarah; Agostini, Sylvain; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Douville, Eric; Flores, Michel; Forcioli, Didier; Furla, Paola; Galand, Pierre E.; Gilson, Eric; Lombard, Fabien; Pesant, Stephane; Reynaud, Stephanie; Sullivan, Matthew B.; Sunagawa, Shinichi; Thomas, Olivier P.; Trouble, Romain; Thurber, Rebecca Vega; Zoccola, Didier; Planes, Serge; Allemand, Denis; Wincker, Patrick
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Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes
err2023-04-01
err17
errOAAI
errMarletaz, Ferdinand; Couloux, Arnaud; Poulain, Julie; Labadie, Karine; Da Silva, Corinne; Mangenot, Sophie; Noel, Benjamin; Poustka, Albert J.; Dru, Philippe; Pegueroles, Cinta; Borra, Marco; Lowe, Elijah K.; Lhomond, Guy; Besnardeau, Lydia; Le Gras, Stephanie; Ye, Tao; Gavriouchkina, Daria; Russo, Roberta; Costa, Caterina; Zito, Francesca; Anello, Letizia; Nicosia, Aldo; Ragusa, Maria Antonietta; Pascual, Marta; Molina, M. Dolores; Chessel, Aline; Di Carlo, Marta; Turon, Xavier; Copley, Richard R.; Exposito, Jean-Yves; Martinez, Pedro; Cavalieri, Vincenzo; de Leon, Smadar Ben Tabou; Croce, Jenifer; Oliveri, Paola; Matranga, Valeria; Di Bernardo, Maria; Morales, Julia; Cormier, Patrick; Genevieve, Anne-Marie; Aury, Jean Marc; Barbe, Valerie; Wincker, Patrick; Arnone, Maria Ina; Gache, Christian; Lepage, Thierry
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Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies
err2023-02-25
err7
errOAAI
errDore, Hugo; Guyet, Ulysse; Leconte, Jade; Farrant, Gregory K.; Alric, Benjamin; Ratin, Morgane; Ostrowski, Martin; Ferrieux, Mathilde; Brillet-Gueguen, Loraine; Hoebeke, Mark; Siltanen, Jukka; Le Corguille, Gildas; Corre, Erwan; Wincker, Patrick; Scanlan, David J.; Eveillard, Damien; Partensky, Frederic; Garczarek, Laurence
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Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
err2022-12-15
err22
errOAAI
errDorrell, Richard G.; Kuo, Alan; Fussy, Zoltan; Richardson, Elisabeth H.; Salamov, Asaf; Zarevski, Nikola; Freyria, Nastasia J.; Ibarbalz, Federico M.; Jenkins, Jerry; Karlusich, Juan Jose Pierella; Steindorff, Andrei Stecca; Edgar, Robyn E.; Handley, Lori; Lail, Kathleen; Lipzen, Anna; Lombard, Vincent; McFarlane, John; Nef, Charlotte; Vanclova, Anna M. G. Novak; Peng, Yi; Plott, Chris; Potvin, Marianne; Vieira, Fabio Rocha Jimenez; Barry, Kerrie; de Vargas, Colomban; Henrissat, Bernard; Pelletier, Eric; Schmutz, Jeremy; Wincker, Patrick; Dacks, Joel B.; Bowler, Chris; Grigoriev, Igor, V; Lovejoy, Connie
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