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Peer Bork

European Molecular Biology Laboratory

233H-index
948Paper Count
37.8WCitation Count
Published Papers 353
Publication Date
Multidisciplinary Delphi consensus statement on minimal standards for clinical metadata and end points in microbiome studies
err2026-08-03
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PREAI
errRobert Schierwagen; Federica Carraturo; Anandhi Iyappan; Maximilian J. Brol; Celine Druart; Mads Israelsen; Zahra Hassani; Kevin Legent; Yolanda Godoy; Corrado Vecchi; Julie Rodriguez; Ida Falk Villesen; Alexander Jarde; Manimozhiyan Arumugam; Aleksander Krag; Emmanuelle Maguin; Peer Bork; Joel Doré; Jonel Trebicka; Alessio Fasano
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Diet and microbiome shape small-molecule cytokinin pools in mammals
err2026-06-12
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errOAAI
errEman M. Othman; Elena Bencurova; Pamela Ferretti; Peer Bork; Alvaro Rodriguez del Rio; Jaime Huerta-Cepas; Ignazio Caruana; Rania Abdel-latif; Aman Akash; Alfonso Albacete; Feras Lafi; Thomas Dandekar; Muhammad Naseem
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Planetary microbiome structure and generalist-driven gene flow across disparate habitats
errCell
IF42.5
err2026-02-09
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errOAAI
errChan Yeong Kim; Daniel Podlesny; Jonas Schiller; Supriya Khedkar; Anthony Fullam; Askarbek Orakov; Christian Schudoma; Shahriyar Mahdi Robbani; Anastasiia Grekova; Michael Kuhn; Peer Bork
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Prominent mediatory role of gut microbiome in the effect of lifestyle on host metabolic phenotypes
err2025-12-31
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PREAI
errAdriouch, Solia; Belda, Eugeni; Swartz, Timothy D.; Forslund, Sofia; Prifti, Edi; Aron-Wisnewsky, Judith; Chakaroun, Rima; Nielsen, Trine; Poitou, Christine; Bel-Lassen, Pierre; Rouault, Christine; Le Roy, Tiphaine; Andrikopoulos, Petros; Chechi, Kanta; Puig-Castellvi, Francesc; Dionicio, Ines Castro; Froguel, Philippe; Holmes, Bridget; Alili, Rohia; Andreelli, Fabrizio; Soula, Hedi; Salem, Joe-Elie; Falony, Gwen; Vieira-Silva, Sara; Raes, Jeroen; Bork, Peer; Stumvoll, Michael; Pedersen, Oluf; Ehrlich, S. Dusko; Dumas, Marc-Emmanuel; Oppert, Jean-Michel; Dao, Maria Carlota; Zucker, Jean-Daniel; Clement, Karine
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Staphylococcus aureus colonization and bloodstream infection in very preterm infants
err2025-12-02
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errOAAI
errRebecca L. Knoll; Daniel Podlesny; Ingmar Fortmann; Wolfgang Göpel; Michael Zemlin; Susan Lynch; Peer Bork; Stephan Gehring; Christoph Härtel
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eggNOG v7: phylogeny-based orthology predictions and functional annotations
err2025-12-01
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PREAI
errHernandez-Plaza, Ana; Deng, Ziqi; Robledo-Yague, Fabian; Szklarczyk, Damian; von Mering, Christian; Bork, Peer; Huerta-Cepas, Jaime
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metaTraits: a large-scale integration of microbial phenotypic trait information
err2025-11-01
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PREAI
errPodlesny, Daniel; Kim, Chan Yeong; Robbani, Shahriyar Mahdi; Schudoma, Christian; Fullam, Anthony; Reimer, Lorenz C.; Koblitz, Julia; Schober, Isabel; Iyappan, Anandhi; Van rossum, Thea; Schiller, Jonas; Grekova, Anastasia; Kuhn, Michael; Bork, Peer
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VIRE: a metagenome-derived, planetary-scale virome resource with environmental context
err2025-11-01
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PREAI
errNishijima, Suguru; Fullam, Anthony; Schmidt, Thomas S. B.; Kuhn, Michael; Bork, Peer
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proGenomes4: providing 2 million accurately and consistently annotated high-quality prokaryotic genomes
err2025-11-01
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errOAAI
errFullam, Anthony; Letunic, Ivica; Maistrenko, Oleksandr M.; Castro, Alexandre Areias; Coelho, Luis Pedro; Grekova, Anastasiia; Schudoma, Christian; Khedkar, Supriya; Robbani, Mahdi; Kuhn, Michael; Schmidt, Thomas S. B.; Bork, Peer; Mende, Daniel R.
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Lactococcus A phages predict ACLF while Enterococcus B phages predict bacterial infection in decompensated cirrhosis
err2025-10-10
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errOAAI
errLore Van Espen; Maximilian Joseph Brol; Lila Close; Robert Schierwagen; Wenyi Gu; Marisa I. Keller; Boglarka Balogh; Anthony Fullam; Lander de Coninck; Tomohiro Nakamura; Michael Kuhn; Peer Bork; Wim Laleman; Jasmohan S. Bajaj; Maria Papp; Bernd Schnabl; Jonel Trebicka; Jelle Matthijnssens
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Metalog: curated and harmonised contextual data for global metagenomics samples
err2025-10-01
err3
PREAI
errKuhn, Michael; Schmidt, Thomas Sebastian B.; Ferretti, Pamela; Glazek, Anna; Robbani, Shahriyar mahdi; Akanni, Wasiu; Fullam, Anthony; Schudoma, Christian; Cetin, Ela; Hassan, Mariam; Noack, Kasimir; Schwarz, Anna; Thielemann, Roman; Thomas, Leonie; Von stetten, Moritz; Alves, Renato; Iyappan, Anandhi; Kartal, Ece; Kel, Ivan; Keller, Marisa i; Maistrenko, Oleksandr; Mankowski, Anna; Nishijima, Suguru; Podlesny, Daniel; Schiller, Jonas; Schulz, Sarah; Van rossum, Thea; Bork, Peer
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Uncovering nitroxoline activity spectrum, mode of action and resistance across Gram-negative bacteria
err2025-04-22
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errOAAI
errCacace, Elisabetta; Tietgen, Manuela; Steinhauer, Meike; Mateus, Andre; Schultze, Tilman G.; Eckermann, Marina; Galardini, Marco; Varik, Vallo; Koumoutsi, Alexandra; Parzeller, Jordan J.; Corona, Federico; Orakov, Askarbek; Knopp, Michael; Brauer-Nikonow, Amber; Bork, Peer; Romao, Celia V.; Zimmermann, Michael; Cloetens, Peter; Savitski, Mikhail M.; Typas, Athanasios; Goettig, Stephan
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Multi-biome analysis identifies distinct gut microbial signatures and their crosstalk in ulcerative colitis and Crohn's disease
err2024-11-27
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errOAAI
errAkiyama, Shintaro; Nishijima, Suguru; Kojima, Yasushi; Kimura, Moto; Ohsugi, Mitsuru; Ueki, Kohjiro; Mizokami, Masashi; Hattori, Masahira; Tsuchiya, Kiichiro; Uemura, Naomi; Kawai, Takashi; Bork, Peer; Nagata, Naoyoshi
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The STRING database in 2025: protein networks with directionality of regulation
err2024-11-18
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errOAAI
errSzklarczyk, Damian; Nastou, Katerina; Koutrouli, Mikaela; Kirsch, Rebecca; Mehryary, Farrokh; Hachilif, Radja; Hu, Dewei; Peluso, Matteo E.; Huang, Qingyao; Fang, Tao; Doncheva, Nadezhda T.; Pyysalo, Sampo; Bork, Peer; Jensen, Lars J.; von Mering, Christian
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Bifidobacterium and Lactobacillus Probiotics and Gut Dysbiosis in Preterm Infants
err2024-10-01
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errOAAI
errVan Rossum, Thea; Haiss, Annette; Knoll, Rebecca L.; Marissen, Janina; Podlesny, Daniel; Pagel, Julia; Bleskina, Marina; Vens, Maren; Fortmann, Ingmar; Siller, Bastian; Ricklefs, Isabell; Klopp, Jonas; Hilbert, Katja; Meyer, Claudius; Thielemann, Roman; Goedicke-Fritz, Sybelle; Kuntz, Martin; Wieg, Christian; Teig, Norbert; Koerner, Thorsten; Kribs, Angela; Hudalla, Hannes; Knuf, Markus; Stein, Anja; Gille, Christian; Bagci, Soyhan; Dohle, Frank; Proquitte, Hans; Olbertz, Dirk M.; Schmidt, Esther; Koch, Lutz; Pirr, Sabine; Rupp, Jan; Spiegler, Juliane; Kopp, Matthias V.; Goepel, Wolfgang; Herting, Egbert; Forslund, Sofia K.; Viemann, Dorothee; Zemlin, Michael; Bork, Peer; Gehring, Stephan; Koenig, Inke R.; Henneke, Philipp; Haertel, Christoph
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A catalog of small proteins from the global microbiome
err2024-08-31
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errOAAI
errDuan, Yiqian; Santos-Junior, Celio Dias; Schmidt, Thomas Sebastian; Fullam, Anthony; de Almeida, Breno L. S.; Zhu, Chengkai; Kuhn, Michael; Zhao, Xing-Ming; Bork, Peer; Coelho, Luis Pedro
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Opportunities and barriers in omics-based biomarker discovery for steatotic liver diseases
err2024-08-01
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errOAAI
errThiele, Maja; Villesen, Ida Falk; Niu, Lili; Johansen, Stine; Sulek, Karolina; Nishijima, Suguru; Van Espen, Lore; Keller, Marisa; Israelsen, Mads; Suvitaival, Tommi; de Zawadzki, Andressa; Juel, Helene Baek; Brol, Maximilian Joseph; Stinson, Sara Elizabeth; Huang, Yun; Silva, Maria Camilla Alvarez; Kuhn, Michael; Anastasiadou, Ema; Leeming, Diana Julie; Karsdal, Morten; Matthijnssens, Jelle; Arumugam, Manimozhiyan; Dalgaard, Louise Torp; Legido-Quigley, Cristina; Mann, Matthias; Trebicka, Jonel; Bork, Peer; Jensen, Lars Juhl; Hansen, Torben; Krag, Aleksander
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The diversity of the microbiome impacts chronic lymphocytic leukemia development in mice and humans
err2024-05-09
err3
errOAAI
errFaitova, Tereza; Coelho, Mariana; da Cunha-Bang, Caspar; Oeztuerk, Selcen; Kartal, Ece; Bork, Peer; Seiffert, Martina; Niemann, Carsten U.
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