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时亚洲 cover

时亚洲 (Ya-Zhou Shi)

Wuhan Textile University

19H-index
72Paper Count
1.0KCitation Count
Published Papers 27
Publication Date
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gCoSRNA: Generalizable Coaxial Stacking Prediction for RNA Junctions Using Secondary Structure
errBiomolecules
IF4.8
err2026-02-03
err0
errOAAI
errShasha Li; Qianqian Xu; Ya-Lan Tan; Jian Jiang; Bengong Zhang; Ya-Zhou Shi
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TiRNA: a coarse-grained method with temperature and ion effects for RNA structure folding and prediction
errNucleic Acids Research
IF13.1
err2026-01-27
err2
PREAI
errWang, Xunxun; Zhou, Zouchenyu; Yu, Shixiong; Tan, Ya-Lan; Shi, Ya-Zhou; Tan, Zhi-Jie
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A review of recent advances in generative artificial intelligence models for biomolecular sciences
errActa Pharmaceutica Sinica B
IF14.6
err2025-12-11
err0
errOAAI
errJian Jiang; Daixin Li; Guilin Wang; Nicole Hayes; Yazhou Shi; Huahai Qiu; Bengong Zhang; Tianshou Zhou; Guo-Wei Wei
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errSave
KSRV: a Kernel PCA-Based framework for inferring spatial RNA velocity at single-cell resolution
errFrontiers in Genetics
IF2.8
err2025-11-07
err0
errOAAI
errYan He; Jian Jiang; Huahai Qiu; Ya-Zhou Shi; Ben-Gong Zhang
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Branch-specific gene discovery in cell differentiation using multi-omics graph attention
errPLOS COMPUTATIONAL BIOLOGY
IF3.6
err2025-11-01
err0
PREAI
errYin, Yihao; Zhuang, Linzhi; Wang, Yulei; Shi, Yazhou; Zhang, Bengong
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errSave
Machine learning predictions from unpredictable chaos
errJOURNAL OF THE ROYAL SOCIETY INTERFACE
IF3.5
err2025-10-01
err0
errOAAI
errJiang, Jian; Chen, Long; Ke, Lu; Dou, Bozheng; Zhu, Yueying; Shi, Yazhou; Qiu, Huahai; Zhang, Ben-gong; Zhou, Tianshou; Wei, Guo-Wei
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errSave
Proteomic Learning of Gamma-Aminobutyric Acid (GABA) Receptor-Mediated Anesthesia
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-03-01
err0
errOAAI
errJiang, Jian; Chen, Long; Zhu, Yueying; Shi, Yazhou; Qiu, Huahai; Zhang, Bengong; Zhou, Tianshou; Wei, Guo-Wei
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errSave
scGRN-Entropy: Inferring cell differentiation trajectories using single-cell data and gene regulation network-based transfer entropy
errplos biology
IF3.6
err2024-11-25
err0
errOAAI
errSun, Rui; Cao, Wenjie; Li, Shengxuan; Jiang, Jian; Shi, Yazhou; Zhang, Bengong
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errSave
ABC2A: A Straightforward and Fast Method for the Accurate Backmapping of RNA Coarse-Grained Models to All-Atom Structures
errMOLECULES
IF4.6
err2024-03-11
err2
errOAAI
errShi, Ya-Zhou; Wu, Hao; Li, Sha-Sha; Li, Hui-Zhen; Zhang, Ben-Gong; Tan, Ya-Lan
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errSave
Symmetrical complex serpentine channel introduction of secondary openings with open Y fins integrated optimization design
errINTERNATIONAL JOURNAL OF THERMAL SCIENCES
IF5
err2024-01-01
err1
errOAAI
errZhang, Furen; Li, Xue; Zhao, Haodong; Huang, Zhikai; Lu, Xinglong; Shi, Yazhou
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errSave
Design and Optimization of an F-type Air-Cooling Structure for Lithium-Ion Battery of Electric Vehicle
errENERGY TECHNOLOGY
IF3.6
err2023-07-11
err2
PREAI
errZhang, Furen; Shi, Yazhou; He, Yanxiao; Liu, Peiwen
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errSave
Computational Modeling of DNA 3D Structures: From Dynamics and Mechanics to Folding
errMOLECULES
IF4.6
err2023-06-17
err6
errOAAI
errMu, Zi-Chun; Tan, Ya-Lan; Liu, Jie; Zhang, Ben-Gong; Shi, Ya-Zhou
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errSave
Predicting 3D structures and stabilities for complex RNA pseudoknots in ion solutions
errBIOPHYSICAL JOURNAL
IF3.1
err2023-04-01
err8
PREAI
errWang, Xunxun; Tan, Ya-Lan; Yu, Shixiong; Shi, Ya-Zhou; Tan, Zhi-Jie
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errSave
rsRNASP: A residue-separation-based statistical potential for RNA 3D structure evaluation
errBIOPHYSICAL JOURNAL
IF3.1
err2022-01-01
err27
errOAAI
errTan, Ya-Lan; Wang, Xunxun; Shi, Ya-Zhou; Zhang, Wenbing; Tan, Zhi-Jie
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errSave
Salt-Dependent RNA Pseudoknot Stability: Effect of Spatial Confinement
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2021-04-13
err8
errOAAI
errFeng, Chenjie; Tan, Ya-Lan; Cheng, Yu-Xuan; Shi, Ya-Zhou; Tan, Zhi-Jie
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errSave
3D structure stability of the HIV-1 TAR RNA in ion solutions: A coarse-grained model study
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2019-10-24
err7
PREAI
errZhang, Ben-Gong; Qiu, Hua-Hai; Jiang, Jian; Liu, Jie; Shi, Ya-Zhou
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errSave
Structure folding of RNA kissing complexes in salt solutions: predicting 3D structure, stability, and folding pathway
errRNA
IF5
err2019-08-07
err20
errOAAI
errJin, Lei; Tan, Ya-Lan; Wu, Yao; Wang, Xunxun; Shi, Ya-Zhou; Tan, Zhi-Jie
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errSave
What is the best reference state for building statistical potentials in RNA 3D structure evaluation?
errRNA
IF5
err2019-04-17
err20
errOAAI
errTan, Ya-Lan; Feng, Chen-Jie; Jin, Lei; Shi, Ya-Zhou; Zhang, Wenbing; Tan, Zhi-Jie
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errSave
Modeling Structure, Stability, and Flexibility of Double-Stranded RNAs in Salt Solutions
errBIOPHYSICAL JOURNAL
IF3.1
err2018-10-01
err25
errOAAI
errJin, Lei; Shi, Ya-Zhou; Feng, Chen-Jie; Tan, Ya-Lan; Tan, Zhi-Jie
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errSave
Understanding the Relative Flexibility of RNA and DNA Duplexes: Stretching and Twist-Stretch Coupling
errBIOPHYSICAL JOURNAL
IF3.1
err2017-03-01
err67
errOAAI
errBao, Lei; Zhang, Xi; Shi, Ya-Zhou; Wu, Yuan-Yan; Tan, Zhi-Jie
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errSave

Research Directions

生物信息学物理生物学RNA结构预测与设计单细胞基因组学数据分析Ø 代表性成果DNA多路结结构预测单细胞数据基因调控网络转录因子推断RNA粗粒化模型反向映射DNA结构预测RNA亲吻复合物结构折叠盐溶液中三维结构预测稳定性与折叠途径RNA发夹的三维结构预测柔性与稳定性预测RNA三维结构预测隐式盐粗粒化模型
Co-authors
Cooperation Journals
M
Michael Andreeff
H-index: 139 · Papers: 2.0K
M
Masatoshi Makuuchi
H-index: 112 · Papers: 1.4K
S
Steven M. Kornblau
H-index: 97 · Papers: 986
T
Tadatoshi Takayama
H-index: 79 · Papers: 734
X
Xuelin Huang
H-index: 68 · Papers: 489
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