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Alan Yocca

HudsonAlpha Institute for Biotechnology

18H-index
41Paper Count
1.9KCitation Count
Published Papers 18
Publication Date
New genomic resources and local adaptation GWAS in wild Malus angustifolia reveal genetic regions for enhancing abiotic resiliency in apple
err2026-07-31
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errOAAI
errBen N Mansfeld; Zoë Migicovsky; Jordan Brock; Blake Hewens-Higgins; Erik Burchard; Alan Yocca; Shujun Ou; Lauren Whitt; Anuradha Dhingra; Alex Harkess; Ben Gutierrez; Steve Nocker; Lisa Tang; Christopher Gottschalk; null
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Haplotype-phased ‘Ottawa 3’ genome unravels differential reaction of apple rootstock roots to mixed viral infection
err2026-04-15
err0
errOAAI
errLarissa Carvalho Costa; Christopher Gottschalk; Davis M. Upchurch; Oscar P. Hurtado-Gonzales; Ben N. Mansfeld; Alan Yocca; Lauren Whitt; Cheryl Vann; Gennaro Fazio
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ZW sex chromosome structure in Amborella trichopoda
err2024-11-25
err1
errOAAI
errCarey, Sarah B.; Akoezbek, Laramie; Lovell, John T.; Jenkins, Jerry; Healey, Adam L.; Shu, Shengqiang; Grabowski, Paul; Yocca, Alan; Stewart, Ada; Jones, Teresa; Barry, Kerrie; Rajasekar, Shanmugam; Talag, Jayson; Scutt, Charlie; Lowry, Porter P.; Munzinger, Jerome; Knox, Eric B.; Soltis, Douglas E.; Soltis, Pamela S.; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, James; Harkess, Alex
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Complementing model species with model clades
err2023-10-12
err4
errOAAI
errMabry, Makenzie E.; Abrahams, R. Shawn; Al-Shehbaz, Ihsan A.; Baker, William J.; Barak, Simon; Barker, Michael S.; Barrett, Russell L.; Beric, Aleksandra; Bhattacharya, Samik; Carey, Sarah B.; Conant, Gavin C.; Conran, John G.; Dassanayake, Maheshi; Edger, Patrick P.; Hall, Jocelyn C.; Hao, Yue; Hendriks, Kasper P.; Hibberd, Julian M.; King, Graham J.; Kliebenstein, Daniel J.; Koch, Marcus A.; Leitch, Ilia J.; Lens, Frederic; Lysak, Martin A.; Mcalvay, Alex C.; McKibben, Michael T. W.; Mercati, Francesco; Moore, Richard C.; Mummenhoff, Klaus; Murphy, Daniel J.; Nikolov, Lachezar A.; Pisias, Michael; Roalson, Eric H.; Schranz, M. Eric; Thomas, Shawn K.; Yu, Qingyi; Yocca, Alan; Pires, J. Chris; Harkess, Alex E.
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Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts
err2023-10-10
err10
errOAAI
errYocca, Alan E.; Platts, Adrian; Alger, Elizabeth; Teresi, Scott; Mengist, Molla F.; Benevenuto, Juliana; Ferrao, Luis Felipe, V; Jacobs, MacKenzie; Babinski, Michal; Magallanes-Lundback, Maria; Bayer, Philipp; Golicz, Agnieszka; Humann, Jodi L.; Main, Dorrie; Espley, Richard, V; Chagne, David; Albert, Nick W.; Montanari, Sara; Vorsa, Nicholi; Polashock, James; Diaz-Garcia, Luis; Zalapa, Juan; Bassil, Nahla, V; Munoz, Patricio R.; Iorizzo, Massimo; Edger, Patrick P.
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A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus
err2023-08-28
err9
errOAAI
errMansfeld, Ben N.; Yocca, Alan; Ou, Shujun; Harkess, Alex; Burchard, Erik; Gutierrez, Benjamin; van Nocker, Steve; Gottschalk, Christopher
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Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit
err2023-05-02
err14
errOAAI
errAlbert, Nick W.; Iorizzo, Massimo; Mengist, Molla F.; Montanari, Sara; Zalapa, Juan; Maule, Andrew; Edger, Patrick P.; Yocca, Alan E.; Platts, Adrian E.; Pucker, Boas; Espley, Richard, V
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Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory
err2023-01-20
err25
errOAAI
errBryson, Abigail E.; Lanier, Emily R.; Lau, Kin H.; Hamilton, John P.; Vaillancourt, Brieanne; Mathieu, Davis; Yocca, Alan E.; Miller, Garret P.; Edger, Patrick P.; Buell, C. Robin; Hamberger, Bjoern
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There and back again; historical perspective and future directions for Vaccinium breeding and research studies
err2022-04-11
err41
errOAAI
errEdger, Patrick P.; Iorizzo, Massimo; Bassil, Nahla, V; Benevenuto, Juliana; Ferrao, Luis Felipe, V; Giongo, Lara; Hummer, Kim; Lawas, Lovely Mae F.; Leisner, Courtney P.; Li, Changying; Munoz, Patricio R.; Ashrafi, Hamid; Atucha, Amaya; Babiker, Ebrahiem M.; Canales, Elizabeth; Chagne, David; DeVetter, Lisa; Ehlenfeldt, Mark; Espley, Richard, V; Gallardo, Karina; Gunther, Catrin S.; Hardigan, Michael; Hulse-Kemp, Amanda M.; Jacobs, MacKenzie; Lila, Mary Ann; Luby, Claire; Main, Dorrie; Mengist, Molla F.; Owens, Gregory L.; Perkins-Veazie, Penelope; Polashock, James; Pottorff, Marti; Rowland, Lisa J.; Sims, Charles A.; Song, Guo-qing; Spencer, Jessica; Vorsa, Nicholi; Yocca, Alan E.; Zalapa, Juan
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Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.)
err2021-10-25
err56
errOAAI
errQiao, Qin; Edger, Patrick P.; Xue, Li; Qiong, La; Lu, Jie; Zhang, Yichen; Cao, Qiang; Yocca, Alan E.; Platts, Adrian E.; Knapp, Steven J.; Van Montagu, Marc; Van de Peer, Yves; Lei, Jiajun; Zhang, Ticao
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A chromosome-scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition
err2021-08-04
err33
PREAI
errWu, Chen; Deng, Cecilia; Hilario, Elena; Albert, Nick W.; Lafferty, Declan; Grierson, Ella R. P.; Plunkett, Blue J.; Elborough, Caitlin; Saei, Ali; Gunther, Catrin S.; Ireland, Hilary; Yocca, Alan; Edger, Patrick P.; Jaakola, Laura; Karppinen, Katja; Grande, Adrian; Kylli, Ritva; Lehtola, Veli-Pekka; Allan, Andrew C.; Espley, Richard, V; Chagne, David
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Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana
err2021-02-10
err14
errOAAI
errYocca, Alan E.; Lu, Zefu; Schmitz, Robert J.; Freeling, Michael; Edger, Patrick P.
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Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff
err2020-02-14
err113
errOAAI
errVanBuren, Robert; Wai, Ching Man; Wang, Xuewen; Pardo, Jeremy; Yocca, Alan E.; Wang, Hao; Chaluvadi, Srinivasa R.; Han, Guomin; Bryant, Douglas; Edger, Patrick P.; Messing, Joachim; Sorrells, Mark E.; Mockler, Todd C.; Bennetzen, Jeffrey L.; Michael, Todd P.
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Reply to: Revisiting the origin of octoploid strawberry
err2019-12-16
err49
errOAAI
errEdger, Patrick P.; McKain, Michael R.; Yocca, Alan E.; Knapp, Steven J.; Qiao, Qin; Zhang, Ticao
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Origin and evolution of the octoploid strawberry genome (vol 51, pg 541, 2019)
err2019-03-06
err6
errOAAI
errEdger, Patrick P.; Poorten, Thomas J.; VanBuren, Robert; Hardigan, Michael A.; Colle, Marivi; McKain, Michael R.; Smith, Ronald D.; Teresi, Scott J.; Nelson, Andrew D. L.; Wai, Ching Man; Alger, Elizabeth I.; Bird, Kevin A.; Yocca, Alan E.; Pumplin, Nathan; Ou, Shujun; Ben-Zvi, Gil; Brodt, Avital; Baruch, Kobi; Swale, Thomas; Shiue, Lily; Acharya, Charlotte B.; Cole, Glenn S.; Mower, Jeffrey P.; Childs, Kevin L.; Jiang, Ning; Lyons, Eric; Freeling, Michael; Puzey, Joshua R.; Knapp, Steven J.
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Origin and evolution of the octoploid strawberry genome
err2019-02-25
err480
errOAAI
errEdger, Patrick P.; Poorten, Thomasj; VanBuren, Robert; Hardigan, Michael A.; Colle, Marivi; McKain, Michael R.; Smith, Ronald D.; Teresi, Scottj; Nelson, Andrew D. L.; Wai, Ching Man; Alger, Elizabeth, I; Bird, Kevin A.; Yocca, Alan E.; Pumplin, Nathan; Ou, Shujun; Ben-Zvi, Gil; Brode, Avital; Baruch, Kobi; Swale, Thomas; Shiue, Lily; Acharya, Charlotte B.; Cole, Glenn S.; Mower, Jeffrey P.; Childs, Kevin L.; Jiang, Ning; Lyons, Eric; Freeling, Michael; Puzey, Joshua R.; Knapp, Steven J.
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Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry
err2019-01-31
err181
errOAAI
errColle, Marivi; Leisner, Courtney P.; Wai, Ching Man; Ou, Shujun; Bird, Kevin A.; Wang, Jie; Wisecaver, Jennifer H.; Yocca, Alan E.; Alger, Elizabeth I.; Tang, Haibao; Xiong, Zhiyong; Callow, Pete; Ben-Zvi, Gil; Brodt, Avital; Baruch, Kobi; Swale, Thomas; Shiue, Lily; Song, Guo-qing; Childs, Kevin L.; Schilmiller, Anthony; Vorsa, Nicholi; Buell, C. Robin; VanBuren, Robert; Jiang, Ning; Edger, Patrick P.
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