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Simon J. G. Otto

heat-amr (human-environment-animal transdisciplinary amr) research group

16H-index
58Paper Count
864Citation Count
Published Papers 21
Publication Date
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Laboratory tests for bovine respiratory bacteria and antimicrobial resistance in commercial feedlot cattle: comparing culture; long-read metagenomics; and recombinase polymerase amplification
errFrontiers in Microbiology
IF4.5
err2026-05-20
err0
errOAAI
errSJ Simon J. G. Otto; LM Lianne McLeod; EL E. Luke McCarthy; TF Tara Funk; SR Stacey R. Lacoste; ZC Zhijian Chai; MG Matthew G. Links; LD Lael D. Barlow; SP Sheryl P. Gow; DR Dana Ramsay; RZ Rahat Zaheer; TA Tim A. McAllister; PS Paul Stothard; JE Janet E. Hill; CL Cheryl L. Waldner
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The Potential for Sample Testing at the Pen Level to Inform Prudent Antimicrobial Selection for Bovine Respiratory Disease Treatment: Investigations Using a Feedlot Simulation Tool
errAntibiotics
IF0
err2026-03-03
err0
errOAAI
errDana E. Ramsay; Wade McDonald; Sheryl P. Gow; Lianne McLeod; Simon J. G. Otto; Nathaniel D. Osgood; Cheryl L. Waldner
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Novel Recombinase Polymerase Amplification Assay Is Sensitive for Detection of Macrolide Resistance Genes Relevant to Bovine Respiratory Disease Management in Feedlot Calves
errVeterinary Sciences
IF2.3
err2025-11-12
err0
errOAAI
errFunk, Tara; McLeod, Lianne; Conrad, Cheyenne C.; Zaheer, Rahat; Otto, Simon J. G.; Waldner, Cheryl L.; McAllister, Tim A.
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Evaluating the Diagnostic Performance of Long-Read Metagenomic Sequencing Compared to Culture and Antimicrobial Susceptibility Testing for Detection of Bovine Respiratory Bacteria and Indicators of Antimicrobial Resistance
errAntibiotics 2025, Vol. 14, Page 1114
IF0
err2025-11-05
err0
errOAAI
errJennifer N. Abi Younes; Lianne McLeod; Simon J. G. Otto; Zhijian Chai; Stacey Lacoste; E. Luke McCarthy; Matthew G. Links; Emily K. Herman; Paul Stothard; Sheryl P. Gow; John R. Campbell; Cheryl L. Waldner
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Respiratory Bacteria and Antimicrobial Resistance Genes Detected by Long-Read Metagenomic Sequencing Following Feedlot Arrival, Subsequent Treatment Risk and Phenotypic Resistance in Feedlot Calves
errAntibiotics 2025, Vol. 14, Page 1098
IF0
err2025-11-01
err0
errOAAI
errJennifer N. Abi Younes; Lianne McLeod; Stacey R. Lacoste; Zhijian Chai; Emily K. Herman; E. Luke McCarthy; John R. Campbell; Sheryl P. Gow; Paul Stothard; Matthew G. Links; Simon J. G. Otto; Cheryl L. Waldner
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Trematode Infection Prevalence Increases With Snail Richness: Observations From a 4-Year Study of Snail-Trematode Interactions
errECOLOGY AND EVOLUTION
IF2.3
err2025-10-23
err1
errOAAI
errMcPhail, Brooke A.; Frost, Carol M.; Otto, Simon J. G.; Hanington, Patrick C.
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Hypo-osmotic stress is an anticipatory trigger of heat-resistance in presumptive extraintestinal pathogenic Escherichia coli isolated from treated sewage
errFrontiers in Microbiology
IF4.5
err2025-10-08
err0
errOAAI
errKanghee Ryu; Daniel Yu; Paul Stothard; Simon J. G. Otto; Michael Gänzle; Norma J. Ruecker; Norman F. Neumann
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errSave
Opportunities for Laboratory Testing to Inform Antimicrobial Use for Bovine Respiratory Disease: Application of Information Quality Value Stream Maps in Commercial Feedlots
errANTIBIOTICS-BASEL
IF4.6
err2024-09-21
err0
errOAAI
errOtto, Simon J. G.; Pollock, Colleen M.; Relf-Eckstein, Jo-Anne; McLeod, Lianne; Waldner, Cheryl L.
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Is the persistence of Listeria monocytogenes in food processing facilities and its resistance to pathogen intervention linked to its phylogeny?
errAPPLIED AND ENVIRONMENTAL MICROBIOLOGY
IF3.7
err2024-06-18
err3
errOAAI
errvan de Merwe, Chandre; Simpson, David J.; Qiao, Nanzhen; Otto, Simon J. G.; Kovacevic, Jovana; Ganzle, Michael G.; McMullen, Lynn M.
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Bacterial enrichment prior to third-generation metagenomic sequencing improves detection of BRD pathogens and genetic determinants of antimicrobial resistance in feedlot cattle
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2024-05-08
err4
errOAAI
errHerman, Emily K.; Lacoste, Stacey R.; Freeman, Claire N.; Otto, Simon J. G.; McCarthy, E. Luke; Links, Matthew G.; Stothard, Paul; Waldner, Cheryl L.
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Adaptive Case Study-Mixed Methods Design Practices for Researchers Studying Complex Phenomena
errJOURNAL OF MIXED METHODS RESEARCH
IF7.8
err2024-05-01
err1
errOAAI
errPoth, Cheryl N.; Wongvorachan, Tarid; Bulut, Okan; Otto, Simon J. G.
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Variation in Pen-Level Prevalence of BRD Bacterial Pathogens and Antimicrobial Resistance Following Feedlot Arrival in Beef Calves
errANTIBIOTICS-BASEL
IF4.6
err2024-04-02
err6
errOAAI
errYounes, Jennifer N. Abi; Campbell, John R.; Otto, Simon J. G.; Gow, Sheryl P.; Woolums, Amelia R.; Jelinski, Murray; Lacoste, Stacey; Waldner, Cheryl L.
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Perceptions of antimicrobial stewardship: identifying drivers and barriers across various professions in Canada utilizing a one health approach
errFRONTIERS IN PUBLIC HEALTH
IF3.4
err2023-08-03
err2
errOAAI
errMccubbin, Kayley D.; de Jong, Ellen; Smid, Anne-Marieke C.; Ida, Jennifer A.; Bodaneze, Julia; Anholt, R. Michele; Larose, Samantha; Otto, Simon J. G.; Barkema, Herman W.
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Differential survival of potentially pathogenic, septicemia- and meningitis-causing E. coli across the wastewater treatment train
errNPJ CLEAN WATER
IF11.4
err2022-07-20
err8
errOAAI
errYu, Daniel; Ryu, Kanghee; Otto, Simon J. G.; Stothard, Paul; Banting, Graham; Ruecker, Norma; Neumann, Norman F.; Zhi, Shuai
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Naturalized Escherichia coli in Wastewater and the Co-evolution of Bacterial Resistance to Water Treatment and Antibiotics
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2022-05-30
err22
errOAAI
errYu, Daniel; Ryu, Kanghee; Zhi, Shuai; Otto, Simon J. G.; Neumann, Norman F.
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errSave
Knowledge Gaps in the Understanding of Antimicrobial Resistance in Canada
errFRONTIERS IN PUBLIC HEALTH
IF3.4
err2021-10-20
err30
errOAAI
errMcCubbin, Kayley D.; Anholt, R. Michele; de Jong, Ellen; Ida, Jennifer A.; Nobrega, Diego B.; Kastelic, John P.; Conly, John M.; Gotte, Matthias; McAllister, Tim A.; Orsel, Karin; Lewis, Ian; Jackson, Leland; Plastow, Graham; Wieden, Hans-Joachim; McCoy, Kathy; Leslie, Myles; Robinson, Joan L.; Hardcastle, Lorian; Hollis, Aidan; Ashbolt, Nicholas J.; Checkley, Sylvia; Tyrrell, Gregory J.; Buret, Andre G.; Rennert-May, Elissa; Goddard, Ellen; Otto, Simon J. G.; Barkema, Herman W.
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One Health Evaluation of Antimicrobial Use and Resistance Surveillance: A Novel Tool for Evaluating Integrated, One Health Antimicrobial Resistance and Antimicrobial Use Surveillance Programs
errFRONTIERS IN PUBLIC HEALTH
IF3.4
err2021-08-04
err8
errOAAI
errHaworth-Brockman, Margaret; Saxinger, Lynora M.; Miazga-Rodriguez, Misha; Wierzbowski, Aleksandra; Otto, Simon J. G.
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Using Data Mining for Rapid Complex Case Study Descriptions: Example of Public Health Briefings During the Onset of the COVID-19 Pandemic
errJOURNAL OF MIXED METHODS RESEARCH
IF7.8
err2021-05-19
err11
errOAAI
errPoth, Cheryl N.; Bulut, Okan; Aquilina, Alexandra M.; Otto, Simon J. G.
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Characterization of water treatment-resistant and multidrug-resistant urinary pathogenic Escherichia coli in treated wastewater
errWATER RESEARCH
IF12.4
err2020-09-01
err34
PREAI
errZhi, Shuai; Stothard, Paul; Banting, Graham; Scott, Candis; Huntley, Kristin; Ryu, Kanghee; Otto, Simon; Ashbolt, Nicholas; Checkley, Sylvia; Dong, Tao; Ruecker, Norma J.; Neumann, Norman F.
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Evidence for the evolution, clonal expansion and global dissemination of water treatment-resistant naturalized strains of Escherichia coli in wastewater
errWATER RESEARCH
IF12.4
err2019-06-01
err44
errOAAI
errZhi, Shuai; Banting, Graham; Stothard, Paul; Ashbolt, Nicholas J.; Checkley, Sylvia; Meyer, Kelsey; Otto, Simon; Neumann, Norman F.
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Research Directions

No research directions
Co-authors
Cooperation Journals
T
Tim A. McAllister
H-index: 102 · Papers: 1.3K
M
Michael G. Gänzle
H-index: 89 · Papers: 455
H
Herman W. Barkema
H-index: 88 · Papers: 587
K
Kathy D. McCoy
H-index: 76 · Papers: 249
N
Nicholas J. Ashbolt
H-index: 67 · Papers: 306
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