Not logged in iModMix: integrative module analysis for multi-omics data Narvaez-Bandera, Isis; Lui, Ashley; Mekonnen, Yonatan Ayalew; Rubio, Vanessa; Takyi, Augustine; Sulman, Noah; Wilson, Christopher; Ackerman, Hayley D.; Ospina, Oscar E.; Gonzalez-Calderon, Guillermo; Flores, Elsa R.; Li, Qian; Chen, Ann; Fridley, Brooke L.; Stewart, Paul A. Share Save
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A PAN-CANCER ATLAS OF LEPTOMENINGEAL DISEASE REVEALS BRANCHED CHAIN KETO ACIDS DRIVE IMMUNOSUPPRESSION AND NEURODEGENERATION Khaled, M.; Vallebuona, E.; Ren, Y.; Law, V; Boozo, M.; Chen, Z.; Evernden, B.; Ospina, O.; Liu, M.; Hall, M.; Darville, L.; Izumi, V; Pilon-Thomas, S.; Koomen, J.; Jain, M.; Gomes, A.; Kundalia, R.; Wallace, G.; Chen, A.; Stewart, P.; Corallo, S.; Holmen, S.; Locke, F.; Forsyth, P.; Smalley, I Share Save
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Genomic, transcriptomic, and immunogenomic landscape of over 1300 sarcomas of diverse histology subtypes Soupir, Alex; Ospina, Oscar E.; Hampton, Oliver; Churchman, Michelle; Radmacher, Michael; Hedges, Dale; Mckean, David; Agius, Phaedra; Zeeshan, Saman; Seligson, Nathan D.; Pollock, Raphael; Liebner, David; Chen, James L.; Tinoco, Gabriel; Salhia, Bodour; Mccarter, Martin; Wilky, Breelyn A.; Miller, Benjamin J.; Cavnar, Michael J.; Groundland, John S.; Schneider, Bryan P.; Riedlinger, Gregory; Edge, Stephen B.; Moskaluk, Christopher A.; Cardona, Kenneth; Naqash, Abdul Rafeh; Gonzalez, Ricardo J.; Mullinax, John E.; Joyce, David M.; Binitie, Odion; Douglas Letson, G.; Naghavi, Arash O.; Druta, Mihaela; Reed, Damon R.; Siegel, Erin M.; Teer, Jamie K.; Fridley, Brooke L.; Brohl, Andrew S. Share Save
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear-cell renal-cell carcinoma tumor microenvironment Soupir, Alex C.; Hayes, Mitchell T.; Peak, Taylor C.; Ospina, Oscar; Chakiryan, Nicholas H.; Berglund, Anders E.; Stewart, Paul A.; Nguyen, Jonathan; Segura, Carlos Moran; Francis, Natasha L.; Echevarria, Paola M. Ramos; Chahoud, Jad; Li, Roger; Tsai, Kenneth Y.; Balasi, Jodi A.; Peres, Yamila Caraballo; Dhillon, Jasreman; Martinez, Lindsey A.; Gloria, Warren E.; Schurman, Nathan; Kim, Sean; Gregory, Mark; Mule, James; Fridley, Brooke L.; Manley, Brandon J. Share Save
Preexisting Skin-Resident CD8 and γδ T-cell Circuits Mediate Immune Response in Merkel Cell Carcinoma and Predict Immunotherapy Efficacy Reinstein, Zachary Z.; Zhang, Yue; Ospina, Oscar E.; Nichols, Matt D.; Chu, Victoria A.; Pulido, Alvaro de Mingo; Prieto, Karol; Nguyen, Jonathan V.; Yin, Rui; Segura, Carlos Moran; Usman, Ahmed; Sell, Brittney; Ng, Spencer; de la Iglesia, Janis V.; Chandra, Sunandana; Sosman, Jeffrey A.; Cho, Raymond J.; Cheng, Jeffrey B.; Ivanova, Ellie; Koralov, Sergei B.; Slebos, Robbert J. C.; Chung, Christine H.; Khushalani, Nikhil I.; Messina, Jane L.; Sarnaik, Amod A.; Zager, Jonathan S.; Sondak, Vernon K.; Vaske, Charles; Kim, Sungjune; Brohl, Andrew S.; Mi, Xinlei; Pierce, Brian G.; Wang, Xuefeng; Fridley, Brooke L.; Tsai, Kenneth Y.; Choi, Jaehyuk Share Save
Spatial transcriptomics analysis identifies a tumorpromoting function of the meningeal stroma in melanoma leptomeningeal disease Alhaddad, Hasan; Ospina, Oscar E.; Khaled, Mariam Lotfy; Ren, Yuan; Vallebuona, Ethan; Boozo, Mohammad Baraa; Forsyth, Peter A.; Pina, Yolanda; Macaulay, Robert; Law, Vincent; Tsai, Kenneth Y.; Cress, W. Douglas; Fridley, Brooke; Smalley, Inna Share Save
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Genomic landscape and estimation of immune infiltration of soft tissue sarcoma histology subtypes from the ORIEN network Soupir, Alex C.; Ospina, Oscar E.; Hedges, Dale; Teer, Jamie K.; Radmacher, Michael D.; McKean, David M.; Seligson, Nathan; McCarter, Martin; Wilkey, Breelyn; Riedlinger, Greg; Groundland, John; Miller, Benjamin J.; Schneider, Bryan; Patel, Reema; Rafeh-Naqash, Abdul; Edge, Stephen; Salhia, Bodour; Moskaluk, Chris; Johns, Maggy; Churchman, Michelle L.; Hampton, Oliver; Liebner, David; Fridley, Brooke L.; Brohl, Andrew S. Share Save
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment Soupir, Alex C.; Hayes, Mitchell T.; Peak, Taylor C.; Ospina, Oscar E.; Chakiryan, Nicholas H.; Berglund, Anders E.; Stewart, Paul A.; Nguyen, Jonathan; Moran-Segura, Carlos M.; Francis, Natasha L.; Ramos-Echevarria, Paola M.; Chahoud, Jad; Li, Roger; Tsai, Kenneth Y.; Balasi, Jodi A.; Caraballo-Perez, Yamila; Dhillon, Jasreman; Martinez, Lindsey A.; Gloria, Warren E.; Schurman, Nathan; Kim, Sean; Gregory, Mark; Mule, James J.; Fridley, Brooke L.; Manley, Brandon J. Share Save
spatialGE: Empowering researchers to study the tumor microenvironment leveraging spatial transcriptomics Ospina, Oscar; Manjarres-Betancur, Roberto; Gonzalez-Calderon, Guillermo; Soupir, Alex C.; Smalley, Inna; Tsai, Kenneth; Markowitz, Joseph; Berglund, Anders; Yu, Xiaoqing; Fridley, Brooke L. Share Save
Establishment and characterization of turtle liver organoids provides a potential model to decode their unique adaptations Zdyrski, Christopher; Gabriel, Vojtech; Gessler, Thea B.; Ralston, Abigail; Sifuentes-Romero, Itzel; Kundu, Debosmita; Honold, Sydney; Wickham, Hannah; Topping, Nicholas E.; Sahoo, Dipak Kumar; Bista, Basanta; Tamplin, Jeffrey; Ospina, Oscar; Pineyro, Pablo; Arriaga, Marco; Galan, Jacob A.; Meyerholz, David K.; Allenspach, Karin; Mochel, Jonathan P.; Valenzuela, Nicole Share Save
Branched-chain keto acids exert an immune-suppressive and neurodegenerative microenvironment in CNS leptomeningeal lymphoma Khaled, Mariam Lotfy; Wallace, Gerald; Evernden, Brittany; Chen, Zhihua; Alhaddad, Hasan; Ren, Yuan; Ospina, Oscar; Hall, Maclean; Chen, Ann; Robinson, Timothy J.; Koomen, John; Pilon-Thomas, Shari; Forsyth, Peter; Smalley, Inna Share Save
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Hierarchical Hybrid Enrichment: Multitiered Genomic Data Collection Across Evolutionary Scales, With Application to Chorus Frogs (Pseudacris) Banker, Sarah E.; Lemmon, Alan R.; Hassinger, Alyssa Bigelow; Dye, Mysia; Holland, Sean D.; Kortyna, Michelle L.; Ospina, Oscar E.; Ralicki, Hannah; Lemmon, Emily Moriarty Share Save
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