arrow
Back
K

Katherine Rothamel

university of california san diego

21H-index
51Paper Count
2.9KCitation Count
Published Papers 15
Publication Date
ARID5A RNA-binding coordinates microglial defense and ferroptosis in iPSC-derived models
err2026-08-12
err0
errOAAI
errDanielle M. Schafer; Steven M. Blue; Shuhao Xu; Orel Mizrahi; Maya L. Gosztyla; Lena Street; Katherine L. Rothamel; Hema Kopalle; Samuel B. Landry; Elijah Khalil F. Rosales; Rebecca H. Tien; Sara Elmsaouri; Nicole G. Coufal; Marko Jovanovic; Gene W. Yeo
errShare
errSave
Decoding protein-RNA interactions using CLIP-based methodologies
err2024-07-09
err1
PREAI
errXiang, Joy S.; Schafer, Danielle M.; Rothamel, Katherine L.; Yeo, Gene W.
errShare
errSave
Mudskipper detects combinatorial RNA binding protein interactions in multiplexed CLIP data
err2024-07-01
err0
errOAAI
errHer, Hsuanlin; Rothamel, Katherine L.; Nguyen, Grady G.; Boyle, Evan A.; Yeo, Gene W.
errShare
errSave
A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer
err2023-09-06
err7
errOAAI
errAntal, Corina E.; Oh, Tae Gyu; Aigner, Stefan; Luo, En-Ching; Yee, Brian A.; Campos, Tania; Tiriac, Herve; Rothamel, Katherine L.; Cheng, Zhang; Jiao, Henry; Wang, Allen; Hah, Nasun; Lenkiewicz, Elizabeth; Lumibao, Jan C.; Truitt, Morgan L.; Estepa, Gabriela; Banayo, Ester; Bashi, Senada; Esparza, Edgar; Munoz, Ruben M.; Diedrich, Jolene K.; Sodir, Nicole M.; Mueller, Jasmine R.; Fraser, Cory R.; Borazanci, Erkut; Propper, David; Von Hoff, Daniel D.; Liddle, Christopher; Yu, Ruth T.; Atkins, Annette R.; Han, Haiyong; Lowy, Andrew M.; Barrett, Michael T.; Engle, Dannielle D.; Evan, Gerard I.; Yeo, Gene W.; Downes, Michael; Evans, Ronald M.
errShare
errSave
HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence
err2023-07-01
err12
errOAAI
errJin, Wenhao; Brannan, Kristopher W.; Kapeli, Katannya; Park, Samuel S.; Tan, Hui Qing; Gosztyla, Maya L.; Mujumdar, Mayuresh; Ahdout, Joshua; Henroid, Bryce; Rothamel, Katherine; Xiang, Joy S.; Wong, Limsoon; Yeo, Gene W.
errShare
errSave
Proteomic discovery of chemical probes that perturb protein complexes in human cells
err2023-05-01
err33
errOAAI
errLazear, Michael R.; Remsberg, Jarrett R.; Jaeger, Martin G.; Rothamel, Katherine; Her, Hsuan-lin; DeMeester, Kristen E.; Njomen, Evert; Hogg, Simon J.; Rahman, Jahan; Whitby, Landon R.; Won, Sang Joon; Schafroth, Michael A.; Ogasawara, Daisuke; Yokoyama, Minoru; Lindsey, Garrett L.; Li, Haoxin; Germain, Jason; Barbas, Sabrina; Vaughan, Joan; Hanigan, Thomas W.; Vartabedian, Vincent F.; Reinhardt, Christopher J.; Dix, Melissa M.; Koo, Seong Joo; Heo, Inha; Teijaro, John R.; Simon, Gabriel M.; Ghosh, Brahma; Abdel-Wahab, Omar; Ahn, Kay; Saghatelian, Alan; Melillo, Bruno; Schreiber, Stuart L.; Yeo, Gene W.; Cravatt, Benjamin F.
errShare
errSave
RNA Binding Proteins as Pioneer Determinants of Infection: Protective, Proviral, or Both?
err2021-10-28
err11
errOAAI
errLisy, Samantha; Rothamel, Katherine; Ascano, Manuel
errShare
errSave
ELAVL1 primarily couples mRNA stability with the 3′ UTRs of interferon-stimulated genes
err2021-05-01
err42
errOAAI
errRothamel, Katherine; Arcos, Sarah; Kim, Byungil; Reasoner, Clara; Lisy, Samantha; Mukherjee, Neelanjan; Ascano, Manuel
errShare
errSave
Discovery of Widespread Host Protein Interactions with the Pre-replicated Genome of CHIKV Using VIR-CLASP
err2020-05-01
err68
errOAAI
errKim, Byungil; Arcos, Sarah; Rothamel, Katherine; Jian, Jeffrey; Rose, Kristie L.; McDonald, W. Hayes; Bian, Yuqi; Reasoner, Seth; Barrows, Nicholas J.; Bradrick, Shelton; Garcia-Blanco, Mariano A.; Ascano, Manuel
errShare
errSave
Small molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice (vol 8, 750, 2017)
err2017-11-23
err6
errOAAI
errVincent, Jessica; Adura, Carolina; Gao, Pu; Luz, Antonio; Lama, Lodoe; Asano, Yasutomi; Okamoto, Rei; Imaeda, Toshihiro; Aida, Jumpei; Rothamel, Katherine; Gogakos, Tasos; Steinberg, Joshua; Reasoner, Seth; Aso, Kazuyoshi; Tuschl, Thomas; Patel, Dinshaw J.; Glickman, J. Fraser; Ascano, Manuel
errShare
errSave
Small molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice
err2017-09-29
err255
errOAAI
errVincent, Jessica; Adura, Carolina; Gao, Pu; Luz, Antonio; Lama, Lodoe; Asano, Yasutomi; Okamoto, Rei; Imaeda, Toshihiro; Aida, Jumpei; Rothamel, Katherine; Gogakos, Tasos; Steinberg, Joshua; Reasoner, Seth; Aso, Kazuyoshi; Tuschl, Thomas; Patel, Dinshaw J.; Glickman, J. Fraser; Ascano, Manuel
errShare
errSave
The transcriptional landscape of αβ T cell differentiation
err2013-05-05
err248
errOAAI
errMingueneau, Michael; Kreslavsky, Taras; Gray, Daniel; Heng, Tracy; Cruse, Richard; Ericson, Jeffrey; Bendall, Sean; Spitzer, Matt; Nolan, Garry; Kobayashi, Koichi; von Boehmer, Harald; Mathis, Diane; Benoist, Christophe; Best, Adam J.; Knell, Jamie; Goldrath, Ananda; Jojic, Vladimir; Koller, Daphne; Shay, Tal; Regev, Aviv; Cohen, Nadia; Brennan, Patrick; Brenner, Michael; Kim, Francis; Rao, Tata Nageswara; Wagers, Amy; Heng, Tracy; Ericson, Jeffrey; Rothamel, Katherine; Ortiz-Lopez, Adriana; Mathis, Diane; Bezman, Natalie A.; Sun, Joseph C.; Min-Oo, Gundula; Kim, Charlie C.; Lanier, Lewis L.; Miller, Jennifer; Brown, Brian; Merad, Miriam; Gautier, Emmanuel L.; Jakubzick, Claudia; Randolph, Gwendalyn J.; Monach, Paul; Blair, David A.; Dustin, Michael L.; Shinton, Susan A.; Hardy, Richard R.; Laidlaw, David; Collins, Jim; Gazit, Roi; Rossi, Derrick J.; Malhotra, Nidhi; Sylvia, Katelyn; Kang, Joonsoo; Kreslavsky, Taras; Fletcher, Anne; Elpek, Kutlu; Bellemare-Pelletier, Angelique; Malhotra, Deepali; Turley, Shannon
errShare
errSave
Conservation and divergence in the transcriptional programs of the human and mouse immune systems
err2013-02-04
err283
errOAAI
errShay, Tal; Jojic, Vladimir; Zuk, Or; Rothamel, Katherine; Puyraimond-Zemmour, David; Feng, Ting; Wakamatsu, Ei; Benoist, Christophe; Koller, Daphne; Regev, Aviv
errShare
errSave
A common polymorphism near PER1 and the timing of human behavioral rhythms
err2012-10-02
err38
errOAAI
errLim, Andrew S. P.; Chang, Anne-Marie; Shulman, Joshua M.; Raj, Towfique; Chibnik, Lori B.; Cain, Sean W.; Rothamel, Katherine; Benoist, Christophe; Myers, Amanda J.; Czeisler, Charles A.; Buchman, Aron S.; Bennett, David A.; Duffy, Jeanne F.; Saper, Clifford B.; De Jager, Philip L.
errShare
errSave