arrow
Back
J

Jan Baumbach

Institute for Computational Systems Biomedicine

75H-index
760Paper Count
2.3WCitation Count
Published Papers 199
Publication Date
Clifti-GPT: privacy-preserving federated fine-tuning and transferable inference of foundation models on clinical single-cell data
err2026-08-05
err0
errOAAI
errMohammad Bakhtiari; Maria Louise Elkjaer; Ali Oğuz Can; Fabian Theis; Mhaned Oubounyt; Jan Baumbach
errShare
errSave
An Integrated Skin Cell Atlas Decodes the Pilosebaceous Unit
err2026-07-02
err0
errOAAI
errTolga Düz; Daniel Torocsik; Sonia M.E. Momnougui; Mhaned Oubounyt; Benjamin Al; Stefan Gallinat; Jan Baumbach; Nicholas Holzscheck
errShare
errSave
Drugst.One DREAM—Drug repurposing through expert annotation and modification
err2026-05-10
err0
errOAAI
errLisa M. Spindler; Johannes Kersting; Quirin Manz; Michael Hartung; Andreas Maier; Zeinab M. Mamdouh; Ana I. Casas; Jan Baumbach; Markus List
errShare
errSave
Estimating motion artifacts of HR-pQCT scans using automatically derived standard parameters of bone structure- and density-quantification
errBone
IF3.6
err2026-04-01
err0
PREAI
errElias Albrecht; Mikolaj Bartosik; Alexander Simon; Jan Baumbach; Florian Barvencik; Michael Amling; Ralf Oheim; Olga Tsoy; Felix N. von Brackel
errShare
errSave
A microenvironment-determined risk continuum refines subtyping in meningioma and reveals determinants of machine learning-based tumor classification
err2026-02-09
err0
errOAAI
errSybren L. N. Maas; Yiheng Tang; Eric Stutheit-Zhao; Ramin Rahmanzade; Christina Blume; Thomas Hielscher; Ferdinand Zettl; Salvatore Benfatto; Domenico Calafato; Martin Sill; Jasim Kada Benotmane; Yahaya A. Yabo; Felix Behling; Abigail Suwala; Helin Kardo; Michael Ritter; Matthieu Peyre; Roman Sankowski; Konstantin Okonechnikov; Philipp Sievers; Areeba Patel; David Reuss; Mirco J. Friedrich; Damian Stichel; Daniel Schrimpf; Thierry P. P. Van den Bosch; Katja Beck; Hans-Georg Wirsching; Gerhard Jungwirth; C. Oliver Hanemann; Katrin Lamszus; Nima Etminan; Andreas Unterberg; Christian Mawrin; Marc Remke; Olivier Ayrault; Peter Lichter; Guido Reifenberger; Michael Platten; Tim Kacprowski; Markus List; Josch K. Pauling; Jan Baumbach; Till Milde; Rachel Grossmann; Zvi Ram; Miriam Ratliff; Jan-Philipp Mallm; Marian C. Neidert; Eelke M. Bos; Marco Prinz; Michael Weller; Till Acker; Felix J. Hartmann; Matthias Preusser; Ghazaleh Tabatabai; Christel Herold-Mende; Sandro M. Krieg; David T. W. Jones; Stefan M. Pfister; Wolfgang Wick; Michel Kalamarides; Andreas von Deimling; Dieter Henrik Heiland; Volker Hovestadt; Moritz Gerstung; Matthias Schlesner; Felix Sahm
errShare
errSave
Farthest better or nearest worse optimizer: a novel metaheuristic algorithm
err2026-01-07
err0
errOAAI
errAhmad Taheri; Keyvan RahimiZadeh; Jan Baumbach; Amin Beheshti; Olga Zolotareva; Mohammed Azmi Al-Betar; Seyedali Mirjalili; Amir H. Gandomi
errShare
errSave
Detection of alternative splicing: deep sequencing or deep learning?
err2026-01-01
err1
errOAAI
errHackl, Lena Maria; Neuhaus, Fabian; Ameling, Sabine; Volker, Uwe; Baumbach, Jan; Tsoy, Olga
errShare
errSave
ViMOP: a user-friendly and field-applicable pipeline for untargeted viral genome nanopore sequencing
err2025-12-29
err0
errOAAI
errNils Peter Petersen; Mia Le; Annick Renevey; Ehizojie Emua; Sarah Ryter; Giuditta Annibaldis; Jacob Camara; Sanaba Boumbaly; Cyril Erameh; Tanja Laske; Jan Baumbach; Philippe Lemey; Stephan Günther; Sophie Duraffour; Liana Eleni Kafetzopoulou
errShare
errSave
A systematic analysis of the impact of data variation on AI-based histopathological grading of prostate cancer
err2025-11-20
err0
errOAAI
errPatrick Fuhlert; Fabian Westhaeusser; Esther Dietrich; Maximilian Lennartz; Robin Khatri; Nico Kaiser; Pontus Röbeck; Roman Bülow; Saskia Von Stillfried; Anja Witte; Sam Ladjevardi; Anders Drotte; Peter Severgardh; Jan Baumbach; Victor G. Puelles; Michael Häggman; Michael Brehler; Peter Boor; Peter Walhagen; Anca Dragomir
errShare
errSave
Regulation of mRNA, miRNAs, and alternative splicing events in an FSGS-like zebrafish injury model
err2025-10-01
err0
errOAAI
errMattias, Francescapaola; Kliewe, Felix; Lange, Tim; Iervolino, Anna; Tsoy, Olga; Gress, Alexander; Lio, Chit Tong; Simm, Stefan; Kalinina, Olga, V; Baumbach, Jan; Capasso, Giovambattista; Endlich, Nicole
errShare
errSave
Phenotypic Changes in a Monocyte Cluster with High Interleukin-1 Beta Expression during Long-Term Anti-CD20 Therapy
err2025-08-29
err0
errOAAI
errMie Waede PhD; Christina Kingo MSc; Karina Damsbo PhD; Maiken Uhrbrand Joergensen BSc; Mhaned Oubounyt PhD; Morten Gjerstorff PhD; Mads Thomassen PhD; Jan Baumbach PhD; Jesper B. Moeller PhD; Maria L. Elkjaer PhD; Zsolt Illes MD, PhD, DSc
errShare
errSave
Reticulated platelets in coronary artery disease: a multidimensional approach unveils prothrombotic signalling and novel therapeutic targets
err2025-08-01
err4
PREAI
errKirmes, Kilian; Han, Jiaying; Klug, Melissa; Bloxham, Conor J.; Babyak, Olena; Bernett, Judith; Arend, Lis; Manz, Quirin; Raka, Leonora; Schwartz, Leon; Hoffmann, Markus; Rosenbaum, Marc; Ruland, Jurgen; Ciora, Octavia-Andreea; Louadi, Zakaria; Tsoy, Olga; Newaz, Khalique; Modica, Jessica; Conca Dioguardi, Carola; Peano, Clelia; Mueller, Michaela; Santovito, Donato; Viggiani, Giacomo; Kuhne, Stephanie; von Scheidt, Moritz; Nicolai, Leo; Wu, Tianjiao; Baumbach, Jan; Chiarito, Mauro; Laugwitz, Karl-Ludwig; Condorelli, Gianluigi; Raake, Philip W. J.; List, Markus; Bernlochner, Isabell; Bongiovanni, Dario
errShare
errSave
Pathology-oriented multiplexing enables integrative disease mapping
errNature
IF48.5
err2025-07-18
err0
errOAAI
errMalte Kuehl; Yusuke Okabayashi; Milagros N. Wong; Lukas Gernhold; Gabriele Gut; Nico Kaiser; Maria Schwerk; Stefanie K. Gräfe; Frank Y. Ma; Jovan Tanevski; Philipp S. L. Schäfer; Sam Mezher; Jacobo Sarabia del Castillo; Thiago Goldbeck-Strieder; Olga Zolotareva; Michael Hartung; Fernando M. Delgado Chaves; Lukas Klinkert; Ann-Christin Gnirck; Marc Spehr; David Fleck; Mehdi Joodaki; Victor Parra; Mina Shaigan; Martin Diebold; Marco Prinz; Jennifer Kranz; Johan M. Kux; Fabian Braun; Oliver Kretz; Hui Wu; Florian Grahammer; Sven Heins; Marina Zimmermann; Fabian Haas; Dominik Kylies; Nicola Wanner; Jan Czogalla; Bernhard Dumoulin; Nikolay Zolotarev; Maja Lindenmeyer; Pall Karlson; Jens R. Nyengaard; Marcial Sebode; Sören Weidemann; Thorsten Wiech; Hermann-Josef Groene; Nicola M. Tomas; Catherine Meyer-Schwesinger; Christoph Kuppe; Rafael Kramann; Alexandre Karras; Patrick Bruneval; Pierre-Louis Tharaux; Diego Pastene; Benito Yard; Jennifer A. Schaub; Phillip J. McCown; Laura Pyle; Ye Ji Choi; Takashi Yokoo; Jan Baumbach; Pablo J. Sáez; Ivan Costa; Jan-Eric Turner; Jeffrey B. Hodgin; Julio Saez-Rodriguez; Tobias B. Huber; Petter Bjornstad; Matthias Kretzler; Olivia Lenoir; David J. Nikolic-Paterson; Lucas Pelkmans; Stefan Bonn; Victor G. Puelles
errShare
errSave
Privacy-preserving multicenter differential protein abundance analysis with FedProt
err2025-07-11
err0
errOAAI
errYuliya Burankova; Miriam Abele; Mohammad Bakhtiari; Christine von Toerne; Teresa K. Barth; Lisa Schweizer; Pieter Giesbertz; Johannes R. Schmidt; Stefan Kalkhof; Janina Müller-Deile; Peter A. van Veelen; Yassene Mohammed; Elke Hammer; Lis Arend; Klaudia Adamowicz; Tanja Laske; Anne Hartebrodt; Tobias Frisch; Chen Meng; Julian Matschinske; Julian Späth; Richard Röttger; Veit Schwämmle; Stefanie M. Hauck; Stefan F. Lichtenthaler; Axel Imhof; Matthias Mann; Christina Ludwig; Bernhard Kuster; Jan Baumbach; Olga Zolotareva
errShare
errSave
High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation
err2025-05-29
err0
PREAI
errTolga Düz; Daniel Torocsik; Annika Simmering; Peter Wolf; Stefan Gallinat; Jan Baumbach; Nicholas Holzscheck
errShare
errSave
Exploring common mechanisms of adverse drug reactions and disease phenotypes through network-based analysis
err2025-02-01
err1
errOAAI
errFiroozbakht, Farzaneh; Elkjaer, Maria Louise; Handy, Diane E.; Wang, Rui-Sheng; Chervontseva, Zoe; Rarey, Matthias; Loscalzo, Joseph; Baumbach, Jan; Tsoy, Olga
errShare
errSave
IMPACT OF TCR AND BCR SIGNALING ON VACCINATION RESPONSE IN PREGNANT WOMEN
err2025-02-01
err0
PREAI
errThiele, Kristin; Urbschat, Christopher; Stelzer, Ina; Elkjaer, Maria Louise; Oubounyt, Mhaned; Kehribar, Tayyip; Pagenkemper, Mirja; Hansen, Gudula; Gaudilliere, Brice; Diemert, Anke; Becker, Martin; Baumbach, Jan; Arck, Petra
errShare
errSave
Transfer Learning of Human Activities Based on IMU Sensors: A Review
err2025-02-01
err0
PREAI
errAshry, Sara; Das, Supratim; Rafiei, Mahdie; Baumbach, Jan; Baumbach, Linda
errShare
errSave