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Esa Pitkänen

University of Helsinki

43H-index
199Paper Count
1.4WCitation Count
Published Papers 49
Publication Date
Distinct stem cell identities converge into shared erythroid stress in ERCC6L2 disease and Shwachman–Diamond syndrome
err2026-06-16
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errLaura Langohr; Ilse Kaaja; Suvi P. M. Douglas; Hanna Nebelung; Jessica Koski; Ina Ikonen; Lotta Katainen; Katri Maljanen; Marja Hakkarainen; Tuulia Räisänen; Riitta Niinimäki; Sakari Kakko; Timo Siitonen; Sadiksha Adhikari; Markus Vähä-Koskela; Caroline A. Heckman; Jenni Lahtela; Ulla Wartiovaara-Kautto; Esa Pitkänen; Outi Kilpivaara
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Transcriptome profiling of uterine leiomyosarcomas identifies a leiomyoma-like expression pattern that indicates better survival
err2025-10-29
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errKhamaiseh, Sara; Koivisto-Korander, Riitta; Schreiber, Nora; Pitkanen, Esa; Ahvenainen, Terhi; Butzow, Ralf; Mehine, Miika; Vahteristo, Pia
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Genomic landscape of endometrial polyps
err2025-10-26
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errSiiri Reinikka; Miika Mehine; Pernilla von Nandelstadh; Terhi Ahvenainen; Sara Khamaiseh; Susanna Nousiainen; Vilja Jokinen; Annukka Pasanen; Ralf Bützow; Nanna Sarvilinna; Esa Pitkänen; Pia Vahteristo
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Single-cell transcriptomes identify patient-tailored therapies for selective co-inhibition of cancer clones
err2024-10-03
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errIanevski, Aleksandr; Nader, Kristen; Driva, Kyriaki; Senkowski, Wojciech; Bulanova, Daria; Moyano-Galceran, Lidia; Ruokoranta, Tanja; Kuusanmaki, Heikki; Ikonen, Nemo; Sergeev, Philipp; Vaha-Koskela, Markus; Giri, Anil K.; Vaharautio, Anna; Kontro, Mika; Porkka, Kimmo; Pitkanen, Esa; Heckman, Caroline A.; Wennerberg, Krister; Aittokallio, Tero
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A Unified Review of Deep Learning for Automated Medical Coding
err2024-10-01
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errJi, Shaoxiong; Li, Xiaobo; Sun, Wei; Dong, Hang; Taalas, Ara; Zhang, Yijia; Wu, Honghan; Pitkaenen, Esa; Marttinen, Pekka
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Tackling the translational challenges of multi-omics research in the realm of European personalised medicine: A workshop report
err2022-10-13
err9
errOAAI
errOldoni, Emanuela; Saunders, Gary; Bietrix, Florence; Garcia Bermejo, Maria Laura; Niehues, Anna; 't Hoen, Peter A. C.; Nordlund, Jessica; Hajduch, Marian; Scherer, Andreas; Kivinen, Katja; Pitkanen, Esa; Makela, Tomi Pekka; Gut, Ivo; Scollen, Serena; Kozera, Lukasz; Esteller, Manel; Shi, Leming; Ussi, Anton; Andreu, Antonio L.; van Gool, Alain J.
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Enrichment of cancer-predisposing germline variants in adult and pediatric patients with acute lymphoblastic leukemia
err2022-06-23
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errDouglas, Suvi P. M.; Lahtinen, Atte K.; Koski, Jessica R.; Leimi, Lilli; Keranen, Mikko A., I; Koskenvuo, Minna; Heckman, Caroline A.; Jahnukainen, Kirsi; Pitkanen, Esa; Wartiovaara-Kautto, Ulla; Kilpivaara, Outi
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sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies
err2022-01-24
err23
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errNasirigerdeh, Reza; Torkzadehmahani, Reihaneh; Matschinske, Julian; Frisch, Tobias; List, Markus; Spaeth, Julian; Weiss, Stefan; Voelker, Uwe; Pitkaenen, Esa; Heider, Dominik; Wenke, Nina Kerstin; Kaissis, Georgios; Rueckert, Daniel; Kacprowski, Tim; Baumbach, Jan
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Comparative analysis of molecular fingerprints in prediction of drug combination effects
err2021-08-17
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errZagidullin, B.; Wang, Z.; Guan, Y.; Pitkanen, E.; Tang, J.
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Retrotransposon insertions can initiate colorectal cancer and are associated with poor survival
err2019-09-06
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errCajuso, Tatiana; Sulo, Paivi; Tanskanen, Tomas; Katainen, Riku; Taira, Aurora; Hanninen, Ulrika A.; Kondelin, Johanna; Forsstrom, Linda; Valimaki, Niko; Aavikko, Mervi; Kaasinen, Eevi; Ristimaki, Ari; Koskensalo, Selja; Lepisto, Anna; Renkonen-Sinisalo, Laura; Seppala, Toni; Kuopio, Teijo; Bohm, Jan; Mecklin, Jukka-Pekka; Kilpivaara, Outi; Pitkanen, Esa; Palin, Kimmo; Aaltonen, Lauri A.
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Exome and immune cell score analyses reveal great variation within synchronous primary colorectal cancers
err2019-03-21
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errHanninen, Ulrika A.; Wirta, Erkki-Ville; Katainen, Riku; Tanskanen, Tomas; Hamberg, Jiri; Taipale, Minna; Bohm, Jan; Renkonen-Sinisalo, Laura; Lepisto, Anna; Forsstrom, Linda M.; Pitkanen, Esa; Palin, Kimmo; Seppala, Toni T.; Makinen, Netta; Mecklin, Jukka-Pekka; Aaltonen, Lauri A.
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Discovery of potential causative mutations in human coding and noncoding genome with the interactive software BasePlayer
err2018-10-15
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PREAI
errKatainen, Riku; Donner, Iikki; Cajuso, Tatiana; Kaasinen, Eevi; Palin, Kimmo; Makinen, Veli; Aaltonen, Lauri A.; Pitkanen, Esa
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Contribution of allelic imbalance to colorectal cancer
err2018-09-10
err21
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errPalin, Kimmo; Pitkanen, Esa; Turunen, Mikko; Sahu, Biswajyoti; Pihlajamaa, Paivi; Kivioja, Teemu; Kaasinen, Eevi; Valimaki, Niko; Hanninen, Ulrika A.; Cajuso, Tatiana; Aavikko, Mervi; Tuupanen, Sari; Kilpivaara, Outi; van den Berg, Linda; Kondelin, Johanna; Tanskanen, Tomas; Katainen, Riku; Grau, Marta; Rauanheimo, Heli; Plaketti, Roosa-Maria; Taira, Aurora; Sulo, Paivi; Hartonen, Tuomo; Dave, Kashyap; Schmierer, Bernhard; Botla, Sandeep; Sokolova, Maria; Vaharautio, Anna; Gladysz, Kornelia; Ongen, Halit; Dermitzakis, Emmanouil; Bramsen, Jesper Bertram; Orntoft, Torben Falck; Andersen, Claus Lindbjerg; Ristimaki, Ari; Lepisto, Anna; Renkonen-Sinisalo, Laura; Mecklin, Jukka-Pekka; Taipale, Jussi; Aaltonen, Lauri A.
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Identification of predisposing genes for small bowel adenocarcinoma by exome sequencing
err2018-07-01
err0
PREAI
errHanninen, Ulrika A.; Katainen, Riku; Tanskanen, Tomas; Hamberg, Jiri; Ristimaki, Ari; Pukkala, Eero; Taipale, Minna; Mecklin, Jukka-Pekka; Aavikko, Mervi; Forsstrom, Linda M.; Pitkanen, Esa; Makinen, Netta; Aaltonen, Lauri A.
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Single-cell transcriptome analysis on lymphocytes of GATA2 deficiency patients
err2018-07-01
err0
PREAI
errHirvonen, Elina A.; Natri, Inari; Mattila, Pirkko; Mattila, Jenni; Pitkaenen, Esa; Porkka, Kimmo; Kilpivaara, Outi; Wartiovaara-Kautto, Ulla
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Towards pan-genome read alignment to improve variation calling
err2018-05-09
err25
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errValenzuela, Daniel; Norri, Tuukka; Valimaki, Niko; Pitkaenen, Esa; Makinen, Veli
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Germline alterations in a consecutive series of acute myeloid leukemia
errLEUKEMIA
IF13.4
err2018-04-10
err27
PREAI
errWartiovaara-Kautto, Ulla; Hirvonen, Elina A. M.; Pitkaenen, Esa; Heckman, Caroline; Saarela, Janna; Kettunen, Kaisa; Porkka, Kimmo; Kilpivaara, Outi
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Exome-wide somatic mutation characterization of small bowel adenocarcinoma
err2018-03-09
err66
errOAAI
errHanninen, Ulrika A.; Katainen, Riku; Tanskanen, Tomas; Plaketti, Roosa-Maria; Leine, Riku; Hamberg, Jiri; Ristimaki, Ari; Pukkala, Eero; Taipale, Minna; Mecklin, Jukka-Pekka; Forsstrom, Linda M.; Pitkanen, Esa; Palin, Kimmo; Valimaki, Niko; Makinen, Netta; Aaltonen, Lauri A.
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