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Ziding Zhang

china agricultural university

49H-index
209Paper Count
9.7KCitation Count
Published Papers 98
Publication Date
Interpretable deep learning framework for mapping E3–substrate binding interfaces
err2026-05-20
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errDianke Li; Yuting Zhang; Yuan Liu; Zihao Zhang; Yingjie Qu; Jiajun Li; Linyang Jiang; Lihong Diao; Ziding Zhang; Lingqiang Zhang; Chun-Ping Cui; Dong Li
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PPEPFinder: A deep learning framework integrating sequence embeddings and structural graph representations for predicting fungal and oomycete effector proteins
err2025-11-24
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PREAI
errYuan, Mengdi; Zhang, Shaoke; Li, Jiajun; Zheng, Jingyan; Lei, Chenping; Wang, Zhuojun; Zhao, Miao; Shi, Wenyu; Zhang, Ziding
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Multi-omics blood atlas reveals host immune response features of immunocompromised populations following SARS-CoV-2 infection
err2025-09-10
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errOAAI
errXiaodi Yang; Ye Shen; Bo Tang; Jialin Zhu; Bingjie Wang; Qingyun Wang; Wenmin Tian; Stefan Wuchty; Ziding Zhang; Zeyin Liang; Yujun Dong
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Graph neural network integrated with pretrained protein language model for predicting human-virus protein-protein interactions
err2025-09-01
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errOAAI
errJiang, Linyang; Yang, Xiaodi; Guo, Xiaokun; Li, Dianke; Li, Jiajun; Wuchty, Stefan; Shi, Wenyu; Zhang, Ziding
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Comparative outcome and prognostic factor analysis among MDS/AML patients with TP53 mutations, snps, and wild type
err2025-08-30
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errOAAI
errXiaodi Yang; Zeyin Liang; Li Ji; Wei Liu; Bingjie Wang; Yuan Li; Jinping Ou; Xinan Cen; Hanyun Ren; Stefan Wuchty; Ziding Zhang; Yujun Dong
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An early microbial landscape: inspiring endeavor from the China Space Station Habitation Area Microbiome Program (CHAMP)
err2025-03-20
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PREAI
errYuan, Junxia; Yang, Jinlu; Sun, Yue; Meng, Yaqi; He, Ziwei; Zhang, Wende; Dang, Lei; Song, Yan; Xu, Kanyan; Lv, Na; Zhang, Ziding; Guo, Pei; Yin, Hong; Shi, Wenyu
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Genomic differences of patients with hematologic malignancies in different age groups
err2024-12-06
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errYang, Xiaodi; Wang, Qian; Sun, Yuhua; Zhang, Ziding; Wuchty, Stefan; Liang, Zeyin; Dong, Yujun
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Comparative analysis of dynamic transcriptomes reveals specific COVID-19 features and pathogenesis of immunocompromised populations
err2024-06-18
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errOAAI
errYang, Xiaodi; Zhu, Jialin; Wang, Qingyun; Tang, Bo; Shen, Ye; Wang, Bingjie; Ji, Li; Liu, Huihui; Wuchty, Stefan; Zhang, Ziding; Dong, Yujun; Liang, Zeyin
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Multi-modal features-based human-herpesvirus protein-protein interaction prediction by using LightGBM
err2024-01-26
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errYang, Xiaodi; Wuchty, Stefan; Liang, Zeyin; Ji, Li; Wang, Bingjie; Zhu, Jialin; Zhang, Ziding; Dong, Yujun
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POOE: predicting oomycete effectors based on a pre-trained large protein language model
err2024-01-23
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errOAAI
errZhao, Miao; Lei, Chenping; Zhou, Kewei; Huang, Yan; Fu, Chen; Yang, Shiping; Zhang, Ziding
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AraPathogen2.0: An Improved Prediction of Plant-Pathogen Protein-Protein Interactions Empowered by the Natural Language Processing Technique
err2023-12-09
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PREAI
errLei, Chenping; Zhou, Kewei; Zheng, Jingyan; Zhao, Miao; Huang, Yan; He, Huaqin; Yang, Shiping; Zhang, Ziding
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A chromosome-level genome assembly for the Silkie chicken resolves complete sequences for key chicken metabolic, reproductive, and immunity genes
err2023-12-06
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errOAAI
errZhu, Feng; Yin, Zhong-Tao; Zhao, Qiang-Sen; Sun, Yun-Xiao; Jie, Yu-Chen; Smith, Jacqueline; Yang, Yu-Ze; Burt, David W.; Hincke, Maxwell; Zhang, Zi-Ding; Yuan, Meng-Di; Kaufman, Jim; Sun, Cong-Jiao; Li, Jun-Ying; Shao, Li-Wa; Yang, Ning; Hou, Zhuo-Cheng
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Gene coexpression network during ontogeny in the yellow fever mosquito, Aedes aegypti
err2023-06-03
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errOAAI
errLin, Zhinan; Huang, Yuqi; Liu, Sihan; Huang, Qiwen; Zhang, Biliang; Wang, Tianpeng; Zhang, Ziding; Zhu, Xiaowei; Liao, Chenghong; Han, Qian
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PlaASDB: a comprehensive database of plant alternative splicing events in response to stress
err2023-04-27
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errOAAI
errGuo, Xiaokun; Wang, Tianpeng; Jiang, Linyang; Qi, Huan; Zhang, Ziding
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Deep learning-assisted prediction of protein-protein interactions in Arabidopsis thaliana
err2023-03-29
err6
PREAI
errZheng, Jingyan; Yang, Xiaodi; Huang, Yan; Yang, Shiping; Wuchty, Stefan; Zhang, Ziding
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Phosphatidic acid-regulated SOS2 controls sodium and potassium homeostasis in Arabidopsis under salt stress
err2023-02-22
err36
errOAAI
errLi, Jianfang; Shen, Like; Han, Xiuli; He, Gefeng; Fan, Wenxia; Li, Yu; Yang, Shiping; Zhang, Ziding; Yang, Yongqing; Jin, Weiwei; Wang, Yi; Zhang, Wenhua; Guo, Yan
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Rhizobial migration toward roots mediated by FadL-ExoFQP modulation of extracellular long-chain AHLs
err2023-01-10
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errOAAI
errJi, Yuan-Yuan; Zhang, Biliang; Zhang, Pan; Chen, Liu-Chi; Si, You-Wei; Wan, Xi-Yao; Li, Can; Wang, Ren-He; Tian, Yu; Zhang, Ziding; Tian, Chang-Fu
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