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Omer Ali Bayraktar

wellcome sanger institute

37H-index
102Paper Count
1.2WCitation Count
Published Papers 25
Publication Date
Polyclonal selection of immune checkpoint mutations in thyroid autoimmunity
errNature
IF48.5
err2026-04-14
err0
errOAAI
errPantelis A. Nicola; Andrew R. J. Lawson; Alexandra Tidd; Juliette Imbert; Yoshihiro Ishida; Luke A. Wylie; Paul A. Scott; Kenny Roberts; Luke M. R. Harvey; Stefanie V. Lensing; Wei Cheng; Federico Abascal; Daniel Leongamornlert; Yvette Hooks; Matthew Mayho; Nicole Müller-Sienerth; Sara Widaa; Laura Mincarelli; James Illing; Flavia Peci; Bee Ling Ng; Georgeina L. Jarman; Andrew J. C. Russell; Krishnaa T. A. Mahbubani; Kourosh Saeb-Parsy; Anna L. Paterson; Krishna Chatterjee; Raheleh Rahbari; Omer Ali Bayraktar; Michael R. Stratton; Peter J. Campbell; John A. Tadross; Nadia Schoenmakers; Iñigo Martincorena
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A conserved differentiation programme facilitates inhibitory neuron production in the developing mouse and human cerebellum
err2025-12-01
err0
errOAAI
errChristensen, Jens Bager; Donovan, Alex P. A.; Moradi, Marzieh; Vanacore, Giada; Helmy, Mohab; Reid, Adam J.; Lee, Jimmy Tsz Hang; Bayraktar, Omer Ali; Brand, Andrea H.; Bayin, N. Sumru
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Single-cell transcriptomics identifies chondrocyte differentiation dynamics in vivo and in vitro
err2025-07-24
err0
errOAAI
errJohn E.G. Lawrence; Steven Woods; Kenny Roberts; Dinithi Sumanaweera; Petra Balogh; Tong Li; Alexander V. Predeus; Peng He; Krzysztof Polanski; Elena Prigmore; Elizabeth Tuck; Lira Mamanova; Di Zhou; Simone Webb; Laura Jardine; Xiaoling He; Roger A. Barker; Muzlifah Haniffa; Adrienne M. Flanagan; Matthew J. Young; Sam Behjati; Omer Bayraktar; Susan J. Kimber; Sarah A. Teichmann
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Cell-intrinsic metabolic phenotypes identified in patients with glioblastoma, using mass spectrometry imaging of 13C-labelled glucose metabolism
err2025-05-19
err0
errOAAI
errTsyben, Anastasia; Dannhorn, Andreas; Hamm, Gregory; Pitoulias, Manthos; Couturier, Dominique-Laurent; Sawle, Ashley; Briggs, Mayen; Wright, Alan J.; Brodie, Cara; Mendil, Lee; Miller, Jodi L.; Williams, Eleanor C.; Franzen, Lovisa; De Jong, Grand; Gracia, Tannia; Memi, Fani; Bayraktar, Omer Ali; Adapa, Ram; Rao, Jyotsna; Gonzalez-Fernandez, Ariadna; CRUK Rosetta Grand Challenge Consortium, Josephine; Bunch, Josephine; Takats, Zoltan; Barry, Simon T.; Goodwin, Richard J. A.; Mair, Richard; Brindle, Kevin M.
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Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19
err2025-03-10
err0
errOAAI
errLee, Jimmy Tsz Hang; Barnett, Sam N.; Roberts, Kenny; Ashwin, Helen; Milross, Luke; Cho, Jae-Won; Huseynov, Alik; Woodhams, Benjamin; Aivazidis, Alexander; Li, Tong; Majo, Joaquim; Chaves, Patricia; Lee, Michael; Miranda, Antonio M. A.; Jablonska, Zuzanna; Arena, Vincenzo; Hanley, Brian; Osborn, Michael; Uhlmann, Virginie; Xu, Xiao-Ning; Mclean, Gary R.; Teichmann, Sarah A.; Randi, Anna M.; Filby, Andrew; Kaye, Paul M.; Fisher, Andrew J.; Hemberg, Martin; Noseda, Michela; Bayraktar, Omer Ali
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WebAtlas pipeline for integrated single-cell and spatial transcriptomic data
err2024-08-19
err3
PREAI
errLi, Tong; Horsfall, David; Basurto-Lozada, Daniela; Roberts, Kenny; Prete, Martin; Lawrence, John E. G.; He, Peng; Tuck, Elisabeth; Moore, Josh; Yoldas, Aybuke Kupcu; Babalola, Kolawole; Hartley, Matthew; Ghazanfar, Shila; Teichmann, Sarah A.; Haniffa, Muzlifah; Bayraktar, Omer Ali
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Single-cell and spatial transcriptomics analysis of non-small cell lung cancer
err2024-05-23
err6
errOAAI
errDe Zuani, Marco; Xue, Haoliang; Park, Jun Sung; Dentro, Stefan C.; Seferbekova, Zaira; Tessier, Julien; Curras-Alonso, Sandra; Hadjipanayis, Angela; Athanasiadis, Emmanouil I.; Gerstung, Moritz; Bayraktar, Omer; Cvejic, Ana
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Generation of Mammalian Astrocyte Functional Heterogeneity
err2024-05-01
err3
PREAI
errBartels, Theresa; Rowitch, David H.; Bayraktar, Omer Ali
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Human skeletal muscle aging atlas
err2024-04-15
err13
errOAAI
errKedlian, Veronika R.; Wang, Yaning; Liu, Tianliang; Chen, Xiaoping; Bolt, Liam; Tudor, Catherine; Shen, Zhuojian; Fasouli, Eirini S.; Prigmore, Elena; Kleshchevnikov, Vitalii; Pett, Jan Patrick; Li, Tong; Lawrence, John E. G.; Perera, Shani; Prete, Martin; Huang, Ni; Guo, Qin; Zeng, Xinrui; Yang, Lu; Polanski, Krzysztof; Chipampe, Nana-Jane; Dabrowska, Monika; Li, Xiaobo; Bayraktar, Omer Ali; Patel, Minal; Kumasaka, Natsuhiko; Mahbubani, Krishnaa T.; Xiang, Andy Peng; Meyer, Kerstin B.; Saeb-Parsy, Kourosh; Teichmann, Sarah A.; Zhang, Hongbo
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Distinct lung cell signatures define the temporal evolution of diffuse alveolar damage in fatal COVID-19
err2024-01-01
err1
errOAAI
errMilross, Luke; Hunter, Bethany; McDonald, David; Merces, George; Thomson, Amanda; Hilkens, Catharien M. U.; Wills, John; Rees, Paul; Jiwa, Kasim; Cooper, Nigel; Majo, Joaquim; Ashwin, Helen; Duncan, ChristopherJ. A.; Kaye, Paul M.; Bayraktar, Omer Ali; Filby, Andrew; Fisher, Andrew J.
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A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
err2022-12-21
err60
errOAAI
errMadissoon, Elo; Oliver, Amanda J.; Kleshchevnikov, Vitalii; Wilbrey-Clark, Anna; Polanski, Krzysztof; Richoz, Nathan; Orsi, Ana Ribeiro; Mamanova, Lira; Bolt, Liam; Elmentaite, Rasa; Pett, J. Patrick; Huang, Ni; Xu, Chuan; He, Peng; Dabrowska, Monika; Pritchard, Sophie; Tuck, Liz; Prigmore, Elena; Perera, Shani; Knights, Andrew; Oszlanczi, Agnes; Hunter, Adam; Vieira, Sara F.; Patel, Minal; Lindeboom, Rik G. H.; Campos, Lia S.; Matsuo, Kazuhiko; Nakayama, Takashi; Yoshida, Masahiro; Worlock, Kaylee B.; Nikolic, Marko Z.; Georgakopoulos, Nikitas; Mahbubani, Krishnaa T.; Saeb-Parsy, Kourosh; Bayraktar, Omer Ali; Clatworthy, Menna R.; Stegle, Oliver; Kumasaka, Natsuhiko; Teichmann, Sarah A.; Meyer, Kerstin B.
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Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro (vol 53, pg 1698, 201)
err2022-12-20
err1
errOAAI
errGarcia-Alonso, Luz; Handfield, Louis-Francois; Roberts, Kenny; Nikolakopoulou, Konstantina; Fernando, Ridma C.; Gardner, Lucy; Woodhams, Benjamin; Arutyunyan, Anna; Polanski, Krzysztof; Hoo, Regina; Sancho-Serra, Carmen; Li, Tong; Kwakwa, Kwasi; Tuck, Elizabeth; Lorenzi, Valentina; Massalha, Hassan; Prete, Martin; Kleshchevnikov, Vitalii; Tarkowska, Aleksandra; Porter, Tarryn; Mazzeo, Cecilia Icoresi; van Dongen, Stijn; Dabrowska, Monika; Vaskivskyi, Vasyl; Mahbubani, Krishnaa T.; Park, Jong-eun; Jimenez-Linan, Mercedes; Campos, Lia; Kiselev, Vladimir Yu.; Lindskog, Cecilia; Ayuk, Paul; Prigmore, Elena; Stratton, Michael R.; Saeb-Parsy, Kourosh; Moffett, Ashley; Moore, Luiza; Bayraktar, Omer A.; Teichmann, Sarah A.; Turco, Margherita Y.; Vento-Tormo, Roser
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Myeloid cell interferon secretion restricts Zika flavivirus infection of developing and human neural cells
errNEURON
IF15
err2022-12-01
err10
errOAAI
errBulstrode, Harry; Girdler, Gemma C.; Gracia, Tannia; Aivazidis, Alexander; Moutsopoulos, Ilias; Young, Adam M. H.; Hancock, John; He, Xiaoling; Ridley, Katherine; Xu, Zhaoyang; Stockley, John H.; Finlay, John; Hallou, Clement; Fajardo, Teodoro; Fountain, Daniel M.; van Dongen, Stijn; Joannides, Alexis; Morris, Robert; Mair, Richard; Watts, Colin; Santarius, Thomas; Price, Stephen J.; Hutchinson, Peter J. A.; Hodson, Emma J.; Pollard, Steven M.; Mohorianu, Irina; Barker, Roger A.; Sweeney, Trevor R.; Bayraktar, Omer; Gergely, Fanni; Rowitch, David H.
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Cell2location maps fine-grained cell types in spatial transcriptomics
err2022-01-13
err378
PREAI
errKleshchevnikov, Vitalii; Shmatko, Artem; Dann, Emma; Aivazidis, Alexander; King, Hamish W.; Li, Tong; Elmentaite, Rasa; Lomakin, Artem; Kedlian, Veronika; Gayoso, Adam; Jain, Mika Sarkin; Park, Jun Sung; Ramona, Lauma; Tuck, Elizabeth; Arutyunyan, Anna; Vento-Tormo, Roser; Gerstung, Moritz; James, Louisa; Stegle, Oliver; Bayraktar, Omer Ali
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Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
err2021-12-02
err274
errOAAI
errGarcia-Alonso, Luz; Handfield, Louis-Francois; Roberts, Kenny; Nikolakopoulou, Konstantina; Fernando, Ridma C.; Gardner, Lucy; Woodhams, Benjamin; Arutyunyan, Anna; Polanski, Krzysztof; Hoo, Regina; Sancho-Serra, Carmen; Li, Tong; Kwakwa, Kwasi; Tuck, Elizabeth; Lorenzi, Valentina; Massalha, Hassan; Prete, Martin; Kleshchevnikov, Vitalii; Tarkowska, Aleksandra; Porter, Tarryn; Mazzeo, Cecilia Icoresi; van Dongen, Stijn; Dabrowska, Monika; Vaskivskyi, Vasyl; Mahbubani, Krishnaa T.; Park, Jong-Eun; Jimenez-Linan, Mercedes; Campos, Lia; Kiselev, Vladimir Yu.; Lindskog, Cecilia; Ayuk, Paul; Prigmore, Elena; Stratton, Michael R.; Saeb-Parsy, Kourosh; Moffett, Ashley; Moore, Luiza; Bayraktar, Omer A.; Teichmann, Sarah A.; Turco, Margherita Y.; Vento-Tormo, Roser
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Single cell derived mRNA signals across human kidney tumors
err2021-06-23
err23
errOAAI
errYoung, Matthew D.; Mitchell, Thomas J.; Custers, Lars; Margaritis, Thanasis; Morales-Rodriguez, Francisco; Kwakwa, Kwasi; Khabirova, Eleonora; Kildisiute, Gerda; Oliver, Thomas R. W.; de Krijger, Ronald R.; van den Heuvel-Eibrink, Marry M.; Comitani, Federico; Piapi, Alice; Bugallo-Blanco, Eva; Thevanesan, Christine; Burke, Christina; Prigmore, Elena; Ambridge, Kirsty; Roberts, Kenny; Braga, Felipe A. Vieira; Coorens, Tim H. H.; Del Valle, Ignacio; Wilbrey-Clark, Anna; Mamanova, Lira; Stewart, Grant D.; Gnanapragasam, Vincent J.; Rampling, Dyanne; Sebire, Neil; Coleman, Nicholas; Hook, Liz; Warren, Anne; Haniffa, Muzlifah; Kool, Marcel; Pfister, Stefan M.; Achermann, John C.; He, Xiaoling; Barker, Roger A.; Shlien, Adam; Bayraktar, Omer A.; Teichmann, Sarah A.; Holstege, Frank C.; Meyer, Kerstin B.; Drost, Jarno; Straathof, Karin; Behjati, Sam
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A map of transcriptional heterogeneity and regulatory variation in human microglia
err2021-06-03
err103
errOAAI
errYoung, Adam M. H.; Kumasaka, Natsuhiko; Calvert, Fiona; Hammond, Timothy R.; Knights, Andrew; Panousis, Nikolaos; Park, Jun Sung; Schwartzentruber, Jeremy; Liu, Jimmy; Kundu, Kousik; Segel, Michael; Murphy, Natalia A.; McMurran, Christopher E.; Bulstrode, Harry; Correia, Jason; Budohoski, Karol P.; Joannides, Alexis; Guilfoyle, Mathew R.; Trivedi, Rikin; Kirollos, Ramez; Morris, Robert; Garnett, Matthew R.; Timofeev, Ivan; Jalloh, Ibrahim; Holland, Katherine; Mannion, Richard; Mair, Richard; Watts, Colin; Price, Stephen J.; Kirkpatrick, Peter J.; Santarius, Thomas; Mountjoy, Edward; Ghoussaini, Maya; Soranzo, Nicole; Bayraktar, Omer A.; Stevens, Beth; Hutchinson, Peter J.; Franklin, Robin J. M.; Gaffney, Daniel J.
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REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology
err2021-05-21
err63
errOAAI
errSarkans, Ugis; Chiu, Wah; Collinson, Lucy; Darrow, Michele C.; Ellenberg, Jan; Grunwald, David; Heriche, Jean-Karim; Iudin, Andrii; Martins, Gabriel G.; Meehan, Terry; Narayan, Kedar; Patwardhan, Ardan; Russell, Matthew Robert Geoffrey; Saibil, Helen R.; Strambio-De-Castillia, Caterina; Swedlow, Jason R.; Tischer, Christian; Uhlmann, Virginie; Verkade, Paul; Barlow, Mary; Bayraktar, Omer; Birney, Ewan; Catavitello, Cesare; Cawthorne, Christopher; Wagner-Conrad, Stephan; Duke, Elizabeth; Paul-Gilloteaux, Perrine; Gustin, Emmanuel; Harkiolaki, Maria; Kankaanpaa, Pasi; Lemberger, Thomas; McEntyre, Jo; Moore, Josh; Nicholls, Andrew W.; Onami, Shuichi; Parkinson, Helen; Parsons, Maddy; Romanchikova, Marina; Sofroniew, Nicholas; Swoger, Jim; Utz, Nadine; Voortman, Lenard M.; Wong, Frances; Zhang, Peijun; Kleywegt, Gerard J.; Brazma, Alvis
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Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell
err2021-02-05
err88
errOAAI
errKildisiute, Gerda; Kholosy, Waleed M.; Young, Matthew D.; Roberts, Kenny; Elmentaite, Rasa; van Hooff, Sander R.; Pacyna, Clarissa N.; Khabirova, Eleonora; Piapi, Alice; Thevanesan, Christine; Bugallo-Blanco, Eva; Burke, Christina; Mamanova, Lira; Keller, Kaylee M.; Langenberg-Ververgaert, Karin P. S.; Lijnzaad, Philip; Margaritis, Thanasis; Holstege, Frank C. P.; Tas, Michelle L.; Wijnen, Marc H. W. A.; van Noesel, Max M.; Del Valle, Ignacio; Barone, Giuseppe; van der Linden, Reinier; Duncan, Catriona; Anderson, John; Achermann, John C.; Haniffa, Muzlifah; Teichmann, Sarah A.; Rampling, Dyanne; Sebire, Neil J.; He, Xiaoling; de Krijger, Ronald R.; Barker, Roger A.; Meyer, Kerstin B.; Bayraktar, Omer; Straathof, Karin; Molenaar, Jan J.; Behjati, Sam
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Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn's Disease
err2020-12-01
err174
errOAAI
errElmentaite, Rasa; Ross, Alexander D. B.; Roberts, Kenny; James, Kylie R.; Ortmann, Daniel; Gomes, Tomas; Nayak, Komal; Tuck, Liz; Pritchard, Sophie; Bayraktar, Omer Ali; Heuschkel, Robert; Vallier, Ludovic; Teichmann, Sarah A.; Zilbauer, Matthias
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