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J

John L. Rinn

University of Colorado System

100H-index
289Paper Count
9.7WCitation Count
Published Papers 131
Publication Date
Widespread specific intron retention events in nuclear RNA complexes identified by sedimentation analysis of pluripotent cellular extracts
err2025-10-01
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errPereira, Isabela T.; Mamede, Izabela; Amaral, Paulo P.; Franco, Gloria R.; Rinn, John L.
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X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes
err2024-12-05
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errHasenbein, Tim P.; Hoelzl, Sarah; Smith, Zachary D.; Gerhardinger, Chiara; Gonner, Marion O. C.; Aguilar-Pimentel, Antonio; Amarie, Oana V.; Becker, Lore; Calzada-Wack, Julia; Dragano, Nathalia R. V.; da Silva-Buttkus, Patricia; Garrett, Lillian; Hoelter, Sabine M.; Kraiger, Markus; Oestereicher, Manuela A.; Rathkolb, Birgit; Sanz-Moreno, Adrian; Spielmann, Nadine; Wurst, Wolfgang; Gailus-Durner, Valerie; Fuchs, Helmut; de Angelis, Martin Hrabe; Meissner, Alexander; Engelhardt, Stefan; Rinn, John L.; Andergassen, Daniel
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The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation
err2024-08-09
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errMuch, Christian; Lasda, Erika L.; Pereira, Isabela T.; Vallery, Tenaya K.; Ramirez, Daniel; Lewandowski, Jordan P.; Dowell, Robin D.; Smallegan, Michael J.; Rinn, John L.
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Massively parallel dissection of RNA in RNA-protein interactions in vivo
err2024-05-10
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errLee, Yu Hsuan; Hass, Evan P.; Campodonico, Will; Lee, Yong Kyu; Lasda, Erika; Shah, Jaynish S.; Rinn, John L.; Hwang, Taeyoung
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Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses
err2023-12-01
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errNormandin, Erica; Triana, Sergio; Raju, Siddharth S.; Lan, Tammy C. T.; Lagerborg, Kim; Rudy, Melissa; Adams, Gordon C.; DeRuff, Katherine C.; Logue, James; Liu, David; Strebinger, Daniel; Rao, Arya; Messer, Katelyn S.; Sacks, Molly; Adams, Ricky D.; Janosko, Krisztina; Kotliar, Dylan; Shah, Rickey; Crozier, Ian; Rinn, John L.; Mele, Marta; Honko, Anna N.; Zhang, Feng; Babadi, Mehrtash; Luban, Jeremy; Bennett, Richard S.; Shalek, Alex K.; Barkas, Nikolaos; Lin, Aaron E.; Hensley, Lisa E.; Sabeti, Pardis C.; Siddle, Katherine J.
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Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques
err2023-06-30
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errSantus, Luisa; Sopena-Rios, Maria; Garcia-Perez, Raquel; Lin, Aaron E.; Adams, Gordon C.; Barnes, Kayla G.; Siddle, Katherine J.; Wohl, Shirlee; Reverter, Ferran; Rinn, John L.; Bennett, Richard S.; Hensley, Lisa E.; Sabeti, Pardis C.; Mele, Marta
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CREB binds to multiple loci on human chromosome 22
err2023-03-27
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errEuskirchen, G; Royce, TE; Bertone, P; Martone, R; Rinn, JL; Nelson, FK; Sayward, F; Luscombe, NM; Miller, P; Gerstein, M; Weissman, S; Snyder, M
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T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation
err2023-01-31
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errLandshammer, Alexandro; Bolondi, Adriano; Kretzmer, Helene; Much, Christian; Buschow, Rene; Rose, Alina; Wu, Hua-Jun; Mackowiak, Sebastian D.; Braendl, Bjoern; Giesselmann, Pay; Tornisiello, Rosaria; Parsi, Krishna Mohan; Huey, Jack; Mielke, Thorsten; Meierhofer, David; Maehr, Rene; Hnisz, Denes; Michor, Franziska; Rinn, John L.; Meissner, Alexander
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Long non-coding RNAs: definitions, functions, challenges and recommendations
err2023-01-03
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errMattick, John S. S.; Amaral, Paulo P. P.; Carninci, Piero; Carpenter, Susan; Chang, Howard Y. Y.; Chen, Ling-Ling; Chen, Runsheng; Dean, Caroline; Dinger, Marcel E. E.; Fitzgerald, Katherine A. A.; Gingeras, Thomas R. R.; Guttman, Mitchell; Hirose, Tetsuro; Huarte, Maite; Johnson, Rory; Kanduri, Chandrasekhar; Kapranov, Philipp; Lawrence, Jeanne B. B.; Lee, Jeannie T. T.; Mendell, Joshua T. T.; Mercer, Timothy R. R.; Moore, Kathryn J. J.; Nakagawa, Shinichi; Rinn, John L. L.; Spector, David L. L.; Ulitsky, Igor; Wan, Yue; Wilusz, Jeremy E. E.; Wu, Mian
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DNMT1 inhibition by pUG-fold quadruplex RNA
errRNA
IF5
err2022-12-27
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errJansson-Fritzberg, Linnea I.; Sousa, Camila I.; Smallegan, Michael J.; Song, Jessica J.; Gooding, Anne R.; Kasinath, Vignesh; Rinn, John L.; Cech, Thomas R.
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IncRNA requirements for mouse acute myeloid leukemia and normal differentiation
err2022-04-01
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PREAI
errDelas, M. Joaquina; Sabin, Leah R.; Dolzhenko, Egor; Knott, Simon R. V.; Maravilla, Ester Munera; Jackson, Benjamin T.; Wild, Sophia A.; Kovacevic, Tatjana; Stork, Eva Maria; Zhou, Meng; Erard, Nicolas; Lee, Emily; Kelleys, David R.; Roth, Mareike; Barbosa, Ines A. M.; Zuber, Johannes; Rinn, John L.; Smith, Andrew D.; Hannon, Gregory J.
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Evolutionary divergence of Firre localization and expression
errRNA
IF5
err2022-03-18
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errMuch, Christian; Smallegan, Michael J.; Hwang, Taeyoung; Hanson, Skylar D.; Dumbovic, Gabrijela; Rinn, John L.
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Mosaic cis-regulatory evolution drives transcriptional partitioning of HERVH endogenous retrovirus in the human embryo
err2022-02-18
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PREAI
errCarter, Thomas A.; Singh, Manvendra; Dumbovic, Gabrijela; Chobirko, Jason D.; Rinn, John L.; Feschotte, Cedric; Levine, Mia T.
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Noncoding RNAs: biology and applications-a Keystone Symposia report
err2021-11-17
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errCable, Jennifer; Heard, Edith; Hirose, Tetsuro; Prasanth, Kannanganattu, V; Chen, Ling-Ling; Henninger, Jonathan E.; Quinodoz, Sofia A.; Spector, David L.; Diermeier, Sarah D.; Porman, Allison M.; Kumar, Dhiraj; Feinberg, Mark W.; Shen, Xiaohua; Unfried, Juan Pablo; Johnson, Rory; Chen, Chun-Kan; Wilusz, Jeremy E.; Lempradl, Adelheid; McGeary, Sean E.; Wahba, Lamia; Pyle, Anna Marie; Hargrove, Amanda E.; Simon, Matthew D.; Marcia, Marco; Przanowska, Roza K.; Chang, Howard Y.; Jaffrey, Samie R.; Contreras, Lydia M.; Chen, Qi; Shi, Junchao; Mendell, Joshua T.; He, Lin; Song, Erwei; Rinn, John L.; Lalwani, Mukesh Kumar; Kalem, Murat Can; Chuong, Edward B.; Maquat, Lynne E.; Liu, Xuhang
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Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages
err2021-11-01
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errAndergassen, Daniel; Smith, Zachary D.; Kretzmer, Helene; Rinn, John L.; Meissner, Alexander
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Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention (vol 12, 3308, 2021)
err2021-10-21
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errDumbovic, Gabrijela; Braunschweig, Ulrich; Langner, Heera K.; Smallegan, Michael; Biayna, Josep; Hass, Evan P.; Jastrzebska, Katarzyna; Blencowe, Benjamin; Cech, Thomas R.; Caruthers, Marvin H.; Rinn, John L.
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Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention
err2021-06-03
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errDumbovic, Gabrijela; Braunschweig, Ulrich; Langner, Heera K.; Smallegan, Michael; Biayna, Josep; Hass, Evan P.; Jastrzebska, Katarzyna; Blencowe, Benjamin; Cech, Thomas R.; Caruthers, Marvin H.; Rinn, John L.
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The long-noncoding RNA from the MYH7b locus (lncMYH7b) has pronounced effects on cardiomyocyte molecular and cellular phenotypes
err2021-05-14
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errBroadwell, Lindsey; Smallegan, Michael; Rigby, Kevin; Buvoli, Massimo; Navarro-Arriola, Jose; Montgomery, Rusty; Rinn, John; Leinwand, Leslie
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