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SavePervasive tandem duplications and convergent evolution shape coral genomes
Noel, Benjamin; Denoeud, France; Rouan, Alice; Buitrago-Lopez, Carol; Capasso, Laura; Poulain, Julie; Boissin, Emilie; Pousse, Melanie; Da Silva, Corinne; Couloux, Arnaud; Armstrong, Eric; Carradec, Quentin; Cruaud, Corinne; Labadie, Karine; Le-Hoang, Julie; Tambutte, Sylvie; Barbe, Valerie; Moulin, Clementine; Bourdin, Guillaume; Iwankow, Guillaume; Romac, Sarah; Agostini, Sylvain; Banaigs, Bernard; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Douville, Eric; Flores, J. Michel; Forcioli, Didier; Furla, Paola; Galand, Pierre E.; Lombard, Fabien; Pesant, Stephane; Reynaud, Stephanie; Sullivan, Matthew B.; Sunagawa, Shinichi; Thomas, Olivier P.; Trouble, Romain; Thurber, Rebecca Vega; Allemand, Denis; Planes, Serge; Gilson, Eric; Zoccola, Didier; Wincker, Patrick; Voolstra, Christian R.; Aury, Jean-Marc Share Save Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the Cryptic Paramecium ComplexGout, Jean-Francois; Hao, Yue; Johri, Parul; Arnaiz, Olivier; Doak, Thomas G.; Bhullar, Simran; Couloux, Arnaud; Guerin, Frederic; Malinsky, Sophie; Potekhin, Alexey; Sawka, Natalia; Sperling, Linda; Labadie, Karine; Meyer, Eric; Duharcourt, Sandra; Lynch, Michael Share Save Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomesMarletaz, Ferdinand; Couloux, Arnaud; Poulain, Julie; Labadie, Karine; Da Silva, Corinne; Mangenot, Sophie; Noel, Benjamin; Poustka, Albert J.; Dru, Philippe; Pegueroles, Cinta; Borra, Marco; Lowe, Elijah K.; Lhomond, Guy; Besnardeau, Lydia; Le Gras, Stephanie; Ye, Tao; Gavriouchkina, Daria; Russo, Roberta; Costa, Caterina; Zito, Francesca; Anello, Letizia; Nicosia, Aldo; Ragusa, Maria Antonietta; Pascual, Marta; Molina, M. Dolores; Chessel, Aline; Di Carlo, Marta; Turon, Xavier; Copley, Richard R.; Exposito, Jean-Yves; Martinez, Pedro; Cavalieri, Vincenzo; de Leon, Smadar Ben Tabou; Croce, Jenifer; Oliveri, Paola; Matranga, Valeria; Di Bernardo, Maria; Morales, Julia; Cormier, Patrick; Genevieve, Anne-Marie; Aury, Jean Marc; Barbe, Valerie; Wincker, Patrick; Arnone, Maria Ina; Gache, Christian; Lepage, Thierry Share Save Share Save Oak genome reveals facets of long lifespanPlomion, Christophe; Aury, Jean-Marc; Amselem, Joelle; Leroy, Thibault; Murat, Florent; Duplessis, Sebastien; Faye, Sebastien; Francillonne, Nicolas; Labadie, Karine; Le Provost, Gregoire; Lesur, Isabelle; Bartholome, Jerome; Faivre-Rampant, Patricia; Kohler, Annegret; Leple, Jean-Charles; Chantret, Nathalie; Chen, Jun; Dievart, Anne; Alaeitabar, Tina; Barbe, Valerie; Belser, Caroline; Berges, Helene; Bodenes, Catherine; Bogeat-Triboulot, Marie-Beatrice; Bouffaud, Marie-Lara; Brachi, Benjamin; Chancerel, Emilie; Cohen, David; Couloux, Arnaud; Da Silva, Corinne; Dossat, Carole; Ehrenmann, Francois; Gaspin, Christine; Grima-Pettenati, Jacqueline; Guichoux, Erwan; Hecker, Arnaud; Herrmann, Sylvie; Hugueney, Philippe; Hummel, Irene; Klopp, Christophe; Lalanne, Celine; Lascoux, Martin; Lasserre, Eric; Lemainque, Arnaud; Desprez-Loustau, Marie-Laure; Luyten, Isabelle; Madoui, Mohammed-Amin; Mangenot, Sophie; Marchal, Clemence; Maumus, Florian; Mercier, Jonathan; Michotey, Celia; Panaud, Olivier; Picault, Nathalie; Rouhier, Nicolas; Rue, Olivier; Rustenholz, Camille; Salin, Franck; Soler, Marcal; Tarkka, Mika; Velt, Amandine; Zanne, Amy E.; Martin, Francis; Wincker, Patrick; Quesneville, Hadi; Kremer, Antoine; Salse, Jerome Share Save Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of DomesticationLegras, Jean-Luc; Galeote, Virginie; Bigey, Frederic; Camarasa, Carole; Marsit, Souhir; Nidelet, Thibault; Sanchez, Isabelle; Couloux, Arnaud; Guy, Julie; Franco-Duarte, Ricardo; Marcet-Houben, Marina; Gabaldon, Toni; Schuller, Dorit; Sampaio, Jose Paulo; Dequin, Sylvie Share Save The Rosa genome provides new insights into the domestication of modern rosesRaymond, Olivier; Gouzy, Jerome; Just, Jeremy; Badouin, Helene; Verdenaud, Marion; Lemainque, Arnaud; Vergne, Philippe; Moja, Sandrine; Choisne, Nathalie; Pont, Caroline; Carrere, Sebastien; Caissard, Jean-Claude; Couloux, Arnaud; Cottret, Ludovic; Aury, Jean-Marc; Szecsi, Judit; Latrasse, David; Madoui, Mohammed-Amin; Francois, Lea; Fu, Xiaopeng; Yang, Shu-Hua; Dubois, Annick; Piola, Florence; Larrieu, Antoine; Perez, Magali; Labadie, Karine; Perrier, Lauriane; Govetto, Benjamin; Labrousse, Yoan; Villand, Priscilla; Bardoux, Claudia; Boltz, Veronique; Lopez-Roques, Celine; Heitzler, Pascal; Vernoux, Teva; Vandenbussche, Michiel; Quesneville, Hadi; Boualem, Adnane; Bendahmane, Abdelhafid; Liu, Chang; Le Bris, Manuel; Salse, Jerome; Baudino, Sylvie; Benhamed, Moussa; Wincker, Patrick; Bendahmane, Mohammed Share Save Share Save Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant rangesGouin, Anais; Bretaudeau, Anthony; Nam, Kiwoong; Gimenez, Sylvie; Aury, Jean-Marc; Duvic, Bernard; Hilliou, Frederique; Durand, Nicolas; Montagne, Nicolas; Darboux, Isabelle; Kuwar, Suyog; Chertemps, Thomas; Siaussat, David; Bretschneider, Anne; Mone, Yves; Ahn, Seung-Joon; Haenniger, Sabine; Grenet, Anne-Sophie Gosselin; Neunemann, David; Maumus, Florian; Luyten, Isabelle; Labadie, Karine; Xu, Wei; Koutroumpa, Fotini; Escoubas, Jean-Michel; Llopis, Angel; Maibeche-Coisne, Martine; Salasc, Fanny; Tomar, Archana; Anderson, Alisha R.; Khan, Sher Afzal; Dumas, Pascaline; Orsucci, Marion; Guy, Julie; Belser, Caroline; Alberti, Adriana; Noel, Benjamin; Couloux, Arnaud; Mercier, Jonathan; Nidelet, Sabine; Dubois, Emeric; Liu, Nai-Yong; Boulogne, Isabelle; Mirabeau, Olivier; Le Goff, Gaelle; Gordon, Karl; Oakeshott, John; Consoli, Fernando L.; Volkoff, Anne-Nathalie; Fescemyer, Howard W.; Marden, James H.; Luthe, Dawn S.; Herrero, Salvador; Heckel, David G.; Wincker, Patrick; Kergoat, Gael J.; Amselem, Joelle; Quesneville, Hadi; Groot, Astrid T.; Jacquin-Joly, Emmanuelle; Negre, Nicolas; Lemaitre, Claire; Legeai, Fabrice; d'Alencon, Emmanuelle; Fournier, Philippe Share Save Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodesBlanc-Mathieu, Romain; Perfus-Barbeoch, Laetitia; Aury, Jean-Marc; Da Rocha, Martine; Gouzy, Jerome; Sallet, Erika; Martin-Jimenez, Cristina; Bailly-Bechet, Marc; Castagnone-Sereno, Philippe; Flot, Jean-Francois; Kozlowski, Djampa K.; Cazareth, Julie; Couloux, Arnaud; Da Silva, Corinne; Guy, Julie; Kim-Jo, Yu-Jin; Rancurel, Corinne; Schiex, Thomas; Abad, Pierre; Wincker, Patrick; Danchin, Etienne G. J. Share Save Recurrent DNA virus domestication leading to different parasite virulence strategiesPichon, Apolline; Bezier, Annie; Urbach, Serge; Aury, Jean-Marc; Jouan, Veronique; Ravallec, Marc; Guy, Julie; Cousserans, Francois; Theze, Julien; Gauthier, Jeremy; Demettre, Edith; Schmieder, Sandra; Wurmser, Francois; Sibut, Vonick; Poirie, Marylene; Colinet, Dominique; da Silva, Corinne; Couloux, Arnaud; Barbe, Valerie; Drezen, Jean-Michel; Volkoff, Anne-Nathalie Share Save Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts (vol 5, 11571, 2015)Morel, Guillaume; Sterck, Lieven; Swennen, Dominique; Marcet-Houben, Marina; Onesime, Djamila; Levasseur, Anthony; Jacques, Noemie; Mallet, Sandrine; Couloux, Arnaux; Labadie, Karine; Amselem, Joelle; Beckerich, Jean-Marie; Henrissat, Bernard; Van de Peer, Yves; Wincker, Patrick; Souciet, Jean-Luc; Gabaldon, Toni; Tinsley, Colin R.; Casaregola, Serge Share Save Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeastsMorel, Guillaume; Sterck, Lieven; Swennen, Dominique; Marcet-Houben, Marina; Onesime, Djamila; Levasseur, Anthony; Jacques, Noemie; Mallet, Sandrine; Couloux, Arnaux; Labadie, Karine; Amselem, Joelle; Beckerich, Jean-Marie; Henrissat, Bernard; Van de Peer, Yves; Wincker, Patrick; Souciet, Jean-Luc; Gabaldon, Toni; Tinsley, Colin R.; Casaregola, Serge Share Save Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategiesPlomion, Christophe; Aury, Jean-Marc; Amselem, Joelle; Alaeitabar, Tina; Barbe, Valerie; Belser, Caroline; Berges, Helene; Bodenes, Catherine; Boudet, Nathalie; Boury, Christophe; Canaguier, Aurelie; Couloux, Arnaud; Da Silva, Corinne; Duplessis, Sebastien; Ehrenmann, Francois; Estrada-Mairey, Barbara; Fouteau, Stephanie; Francillonne, Nicolas; Gaspin, Christine; Guichard, Cecile; Klopp, Christophe; Labadie, Karine; Lalanne, Celine; Le Clainche, Isabelle; Leple, Jean-Charles; Le Provost, Gregoire; Leroy, Thibault; Lesur, Isabelle; Martin, Francis; Mercier, Jonathan; Michotey, Celia; Murat, Florent; Salin, Franck; Steinbach, Delphine; Faivre-Rampant, Patricia; Wincker, Patrick; Salse, Jerome; Quesneville, Hadi; Kremer, Antoine Share Save Expanding the Mutation Spectrum Affecting αIIbβ3 Integrin in Glanzmann Thrombasthenia: Screening of the ITGA2B and ITGB3 Genes in a Large International CohortNurden, Alan T.; Pillois, Xavier; Fiore, Mathieu; Alessi, Marie-Christine; Bonduel, Mariana; Dreyfus, Marie; Goudemand, Jenny; Gruel, Yves; Benabdallah-Guerida, Scheherazade; Latger-Cannard, Veronique; Negrier, Claude; Nugent, Diane; Oiron, Roseline D.; Rand, Margaret L.; Sie, Pierre; Trossaert, Marc; Alberio, Lorenzo; Martins, Nathalie; Sirvain-Trukniewicz, Peggy; Couloux, Arnaud; Canault, Mathias; Fronthroth, Juan Pablo; Fretigny, Mathilde; Nurden, Paquita; Heilig, Roland; Vinciguerra, Christine Share Save Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine YeastsMarsit, Souhir; Mena, Adriana; Bigey, Frederic; Sauvage, Francois-Xavier; Couloux, Arnaud; Guy, Julie; Legras, Jean-Luc; Barrio, Eladio; Dequin, Sylvie; Galeote, Virginie Share Save Share Save Share Save Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domesticationWu, G. Albert; Prochnik, Simon; Jenkins, Jerry; Salse, Jerome; Hellsten, Uffe; Murat, Florent; Perrier, Xavier; Ruiz, Manuel; Scalabrin, Simone; Terol, Javier; Takita, Marco Aurelio; Labadie, Karine; Poulain, Julie; Couloux, Arnaud; Jabbari, Kamel; Cattonaro, Federica; Del Fabbro, Cristian; Pinosio, Sara; Zuccolo, Andrea; Chapman, Jarrod; Grimwood, Jane; Tadeo, Francisco R.; Estornell, Leandro H.; Munoz-Sanz, Juan V.; Ibanez, Victoria; Herrero-Ortega, Amparo; Aleza, Pablo; Perez-Perez, Julian; Ramon, Daniel; Brunel, Dominique; Luro, Francois; Chen, Chunxian; Farmerie, William G.; Desany, Brian; Kodira, Chinnappa; Mohiuddin, Mohammed; Harkins, Tim; Fredrikson, Karin; Burns, Paul; Lomsadze, Alexandre; Borodovsky, Mark; Reforgiato, Giuseppe; Freitas-Astua, Juliana; Quetier, Francis; Navarro, Luis; Roose, Mikeal; Wincker, Patrick; Schmutz, Jeremy; Morgante, Michele; Machado, Marcos Antonio; Talon, Manuel; Jaillon, Olivier; Ollitrault, Patrick; Gmitter, Frederick; Rokhsar, Daniel Share Save 
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