Not logged in Phylogenomic analysis and genetic mechanisms of antifungal resistance in clinical isolates of Candida glabrata (Nakaseomyces glabratus) from across Canada, 2013-2020 De Luca, Domenica G.; Alexander, David C.; Dingle, Tanis C.; Dufresne, Philippe J.; Fuller, Jeff; German, Greg J.; Haldane, David; Hoang, Linda M.; Jiao, Lei; Kus, Julianne V.; Li, Lisa; Malejczyk, Kathy; Sheitoyan-Pesant, Caroline; Stein, Markus; Graham, Morag; Van Domselaar, Gary; Bharat, Amrita Share Save
Preparedness for Candida auris in Canadian Nosocomial Infection Surveillance Program (CNISP) hospitals, 2024 Tan, Charlie; Bharat, Amrita; McGill, Erin; Mitchell, Robyn; Varsaneux, Olivia; Cannon, Kristine; Charles, Marthe K.; Comeau, Jeannette L.; Davis, Ian; Delport, Johan; Dingle, Tanis C.; Dufresne, Philippe J.; Ellis, Chelsey; Ellison, Jennifer; Faheem, Amna; Frenette, Charles; Hoang, Linda; Hota, Susy; Katz, Kevin; Kibsey, Pamela; Kus, Julianne; Lee, Bonita; Li, Xena; Longtin, Yves; Malejczyk, Kathy; Masud, Shazia; Mertz, Dominik; Musto, Sonja; Naik, Kishori; Paramalingam, Senthuri; Poutanen, Susan M.; Purych, Dale; Smith, Stephanie W.; Srigley, Jocelyn A.; Titoria, Reena; Tomlinson, Jen; Wang, Xuetao; Wong, Titus; Yamamura, Deborah; McGeer, Allison Share Save
One Health study of mobile colistin resistance (mcr) in Salmonella enterica in Canada, 2017-2022 Mistry, Ketna; Thumbi, David; Li, Xiao Rui; Charlebois, Audrey; Avery, Brent P.; Deckert, Anne E.; Cormier, Ashley C.; Murphy, Colleen; Kearney, Ashley; Campbell, Jennifer; Christianson, Sara; Alexander, David C.; El Bailey, Sameh; Bekal, Sadjia; Chui, Linda; Ding, Xiaofeng; Dingle, Tanis; Haldane, David; Hoang, Linda; Minion, Jessica; Patel, Samir; Zahariadis, George; Nadon, Celine; Mulvey, Michael R.; Carson, Carolee A.; Reid-Smith, Richard J.; Bharat, Amrita Share Save
BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows Strepis, Nikolaos; Dollee, Dennis; Vrins, Donny; Vanneste, Kevin; Bogaerts, Bert; Carrillo, Catherine; Bharat, Amrita; Horan, Kristy; Sherry, Norelle L.; Seemann, Torsten; Howden, Benjamin P.; Hiltemann, Saskia; Chindelevitch, Leonid; Stubbs, Andrew P.; Hays, John P. Share Save
First Canadian report of transmission of fluconazole-resistant Candida parapsilosis within two hospital networks confirmed by genomic analysis (vol 62, e01161-23, 2024) McTaggart, Lisa R.; Eshaghi, AliReza; Hota, Susy; Poutanen, Susan M.; Johnstone, Jennie; De Luca, Domenica G.; Bharat, Amrita; Patel, Samir N.; Kus, Julianne V. Share Save
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Combining analytical epidemiology and genomic surveillance to identify risk factors associated with the spread of antimicrobial resistance in Salmonella enterica subsp. enterica serovar Heidelberg Hetman, Benjamin M.; Pearl, David L.; Barker, Dillon O. R.; Robertson, James; Nash, John H. E.; Reid-Smith, Richard; Agunos, Agnes; Carrillo, Catherine; Topp, Edward; Van Domselaar, Gary; Parmley, E. Jane; Bharat, Amrita; Mulvey, Michael; Allen, Vanessa; Taboada, Eduardo N. Share Save
A One Health Genomic Investigation of Gentamicin Resistance in Escherichia coli from Human and Chicken Sources in Canada, 2014 to 2017 Cox, Graham W.; Avery, Brent P.; Parmley, E. Jane; Irwin, Rebecca J.; Reid-Smith, Richard J.; Deckert, Anne E.; Finley, Rita L.; Daignault, Danielle; Zhanel, George G.; Mulvey, Michael R.; Bharat, Amrita Share Save
Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr Bharat, Amrita; Petkau, Aaron; Avery, Brent P.; Chen, Jessica C.; Folster, Jason P.; Carson, Carolee A.; Kearney, Ashley; Nadon, Celine; Mabon, Philip; Thiessen, Jeffrey; Alexander, David C.; Allen, Vanessa; El Bailey, Sameh; Bekal, Sadjia; German, Greg J.; Haldane, David; Hoang, Linda; Chui, Linda; Minion, Jessica; Zahariadis, George; Van Domselaar, Gary; Reid-Smith, Richard J.; Mulvey, Michael R. Share Save
A One-Health Genomic Investigation of Gentamicin Resistance in Salmonella from Human and Chicken Sources in Canada, 2014 to 2017 Cox, Graham W.; Parmley, E. Jane; Avery, Brent P.; Irwin, Rebecca J.; Reid-Smith, Richard J.; Deckert, Anne E.; Finley, Rita L.; Daignault, Danielle; Alexander, David C.; Allen, Vanessa; El Bailey, Sameh; Bekal, Sadjia; Chui, Linda; German, Greg J.; Haldane, David; Hoang, Linda; Minion, Jessica; Zahariadis, George; Mulvey, Michael R.; Bharat, Amrita Share Save
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Comparative genomics of ST5 and ST30 methicillin- resistant Staphylococcus aureus sequential isolates recovered from paediatric patients with cystic fibrosis Haim, Maria Sol; Zaheer, Rahat; Bharat, Amrita; Di Gregorio, Sabrina; Di Conza, Jose; Galanternik, Laura; Lubovich, Silvina; Golding, George R.; Graham, Morag R.; Van Domselaar, Gary; Cardona, Silvia T.; Mollerach, Marta Share Save
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Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses Chow, Nancy A.; Munoz, Jose F.; Gade, Lalitha; Berkow, Elizabeth L.; Li, Xiao; Welsh, Rory M.; Forsberg, Kaitlin; Lockhart, Shawn R.; Adam, Rodney; Alanio, Alexandre; Alastruey-Izquierdo, Ana; Althawadi, Sahar; Arauz, Ana Belen; Ben-Ami, Ronen; Bharat, Amrita; Calvo, Belinda; Desnos-Ollivier, Marie; Escandon, Patricia; Gardam, Dianne; Gunturu, Revathi; Heath, Christopher H.; Kurzai, Oliver; Martin, Ronny; Litvintseva, Anastasia P.; Cuomo, Christina A. Share Save
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Genomic Investigation of the Emergence of Invasive Multidrug-Resistant Salmonella enterica Serovar Dublin in Humans and Animals in Canada Mangat, Chand S.; Bekal, Sadjia; Avery, Brent P.; Cote, Genevieve; Daignault, Danielle; Doualla-Bell, Florence; Finley, Rita; Lefebvre, Brigitte; Bharat, Amrita; Parmley, E. Jane; Reid-Smith, Richard J.; Longtin, Jean; Irwin, Rebecca J.; Mulvey, Michael R.; Hoang, Linda; Louie, Marie; Romanow, Roy; Alexander, David C.; Allen, Vanessa; Haldane, David; German, Greg J.; El Bailey, Sameh; Zahariadis, George Share Save
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