Not logged in DeltaBreed: A BrAPI-centric breeding data information system Yarnes, Shawn C.; Palladino, Nick; Meidlinger, Dave J.; Philips, David R.; Sweeney, Heather M.; Mustafa, Shahana A.; Mandych, Matthew L.; Bouabane, Sam; Parsons, Tim E.; Slonecki, Tyler J.; Zhao, Dongyan; Rife, Trevor W.; Ellerbrock, Bryan J.; Courtney, Chaney; Selby, Peter; Mueller, Lukas A.; Flores-Gonzalez, Mirella; Aparicio, Johan S.; Al-Sham'aa, Khaled; Raubach, Sebastian; Jannink, Jean-Luc; Buckler, Edward S.; Beil, Craig T.; Sheehan, Moira J. Share Save
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Post-composing ontology terms for efficient phenotyping in plant breeding Menda, Naama; Ellerbrock, Bryan J.; Simoes, Christiano C.; Karaikal, Srikanth Kumar; Nyaga, Christine; Flores-Gonzalez, Mirella; Tecle, Isaak Y.; Lyon, David; Agbona, Afolabi; Agre, Paterne A.; Peteti, Prasad; Akech, Violet; Asiimwe, Amos; Fauvelle, Eglantine; Meghar, Karima; Tran, Thierry; Dufour, Dominique; Cooper, Laurel; Laporte, Marie-Angelique; Arnaud, Elizabeth; Mueller, Lukas A. Share Save
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BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community Selby, Peter; Abbeloos, Rafael; Adam-Blondon, Anne-Francoise; Agosto-Perez, Francisco J.; Alaux, Michael; Alic, Isabelle; Al-Shamaa, Khaled; Aparicio, Johan Steven; Backlund, Jan Erik; Batac, Aldrin; Beier, Sebastian; Besombes, Gabriel; Boizet, Alice; Brouwer, Matthijs; Casstevens, Terry; Charleroy, Arnaud; Corak, Keo; Courtney, Chaney; Crimi, Mariano; Davuluri, Gouripriya; de Sousa, Kaue; Destin, Jeremy; Dhondt, Stijn; Dhungana, Ajay; Droesbeke, Bert; Feser, Manuel; Flores-Gonzalez, Mirella; Guignon, Valentin; Habito, Corina; Hallab, Asis; Hershberger, Jenna; Hok, Puthick; Hulse-Kemp, Amanda M.; Johnson, Lynn Carol; Jung, Sook; Kersey, Paul; Kilian, Andrzej; Konig, Patrick; Kumar, Suman; Lamos-Sweeney, Josh; Lang, Laszlo; Lange, Matthias; Laporte, Marie-Angelique; Lee, Taein; Le Floch, Erwan; Lopez, Francisco; Madriz, Brandon; Main, Dorrie; Marsella, Marco; Marty, Maud; Michotey, Celia; Miller, Zachary; Milne, Iain; Mueller, Lukas A.; Nderitu, Moses; Neveu, Pascal; Palladino, Nick; Parsons, Tim; Pommier, Cyril; Rami, Jean-Francois; Raubach, Sebastian; Rife, Trevor; Robbins, Kelly; Rouard, Mathieu; Ruff, Joseph; Sempere, Guilhem; Shah, Romil Mayank; Shaw, Paul; Smith, Becky; Soldevilla, Nahuel; Tireau, Anne; Tovar, Clarysabel; Uszynski, Grzegorz; Vega, Vivian Bass; Weise, Stephan; Yarnes, Shawn C.; BrAPIConsortium Share Save
Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing Shippy, Teresa D.; Hosmani, Prashant S.; Flores-Gonzalez, Mirella; Mann, Marina; Miller, Sherry; Weirauch, Matthew T.; Vosberg, Chad; Massimino, Crissy; Tank, Will; de Oliveira, Lucas; Chen, Chang; Hoyt, Stephanie; Adams, Rebekah; Adkins, Samuel; Bailey, Samuel T.; Chen, Xiaoting; Davis, Nina; Delaflor, Yesmarie; Espino, Michelle; Gervais, Kylie; Grace, Rebecca; Harper, Douglas; Hasan, Denisse L.; Hoang, Maria; Holcomb, Rachel; Jernigan, Margaryta R.; Kemp, Melissa; Kennedy, Bailey; Kercher, Kyle; Klaessan, Stefan; Kruse, Angela; Licata, Sophia; Lu, Andrea; Masse, Ron; Mathew, Anuja; Michels, Sarah; Michels, Elizabeth; Neiman, Alan; Norman, Seantel; Norus, Jordan; Ortiz, Yasmin; Panitz, Naftali; Paris, Thomson; Perentesis, Kitty M. R.; Perry, Michael; Reynolds, Max; Sena, Madison M.; Tamayo, Blessy; Thate, Amanda; Vandervoort, Sara; Ventura, Jessica; Weis, Nicholas; Wise, Tanner; Shatters, Robert G.; Heck, Michelle; Benoit, Joshua B.; Hunter, Wayne B.; Mueller, Lukas A.; Brown, Susan J.; D'Elia, Tom; Saha, Surya Share Save
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars Salojaervi, Jarkko; Rambani, Aditi; Yu, Zhe; Guyot, Romain; Strickler, Susan; Lepelley, Maud; Wang, Cui; Rajaraman, Sitaram; Rastas, Pasi; Zheng, Chunfang; Munoz, Daniella Santos; Meidanis, Joao; Paschoal, Alexandre Rossi; Bawin, Yves; Krabbenhoft, Trevor J.; Wang, Zhen Qin; Fleck, Steven J.; Aussel, Rudy; Bellanger, Laurence; Charpagne, Aline; Fournier, Coralie; Kassam, Mohamed; Lefebvre, Gregory; Metairon, Sylviane; Moine, Deborah; Rigoreau, Michel; Stolte, Jens; Hamon, Perla; Couturon, Emmanuel; Tranchant-Dubreuil, Christine; Mukherjee, Minakshi; Lan, Tianying; Engelhardt, Jan; Stadler, Peter; Correia De Lemos, Samara Mireza; Suzuki, Suzana Ivamoto; Sumirat, Ucu; Wai, Ching Man; Dauchot, Nicolas; Orozco-Arias, Simon; Garavito, Andrea; Kiwuka, Catherine; Musoli, Pascal; Nalukenge, Anne; Guichoux, Erwan; Reinout, Havinga; Smit, Martin; Carretero-Paulet, Lorenzo; Filho, Oliveiro Guerreiro; Braghini, Masako Toma; Padilha, Lilian; Sera, Gustavo Hiroshi; Ruttink, Tom; Henry, Robert; Marraccini, Pierre; van de Peer, Yves; Andrade, Alan; Domingues, Douglas; Giuliano, Giovanni; Mueller, Lukas; Pereira, Luiz Filipe; Plaisance, Stephane; Poncet, Valerie; Rombauts, Stephane; Sankoff, David; Albert, Victor A.; Crouzillat, Dominique; de Kochko, Alexandre; Descombes, Patrick Share Save
Spatio-temporal modeling of high-throughput multispectral aerial images improves agronomic trait genomic prediction in hybrid maize Morales, Nicolas; Anche, Mahlet T.; Kaczmar, Nicholas S.; Lepak, Nicholas; Ni, Pengzun; Romay, Maria Cinta; Santantonio, Nicholas; Buckler, Edward S.; Gore, Michael A.; Mueller, Lukas A.; Robbins, Kelly R. Share Save
Connecting data for consumer preferences, food quality, and breeding in support of market-oriented breeding of root, tuber, and banana crops Arnaud, Elizabeth; Menda, Naama; Tran, Thierry; Asiimwe, Amos; Kanaabi, Michael; Meghar, Karima; Forsythe, Lora; Kawuki, Robert; Ellebrock, Bryan; Kayondo, Ismail Siraj; Agbona, Afolabi; Zhang, Xiaofei; Mendes, Thiago; Laporte, Marie-Angelique; Nakitto, Mariam; Ssali, Reuben Tendo; Asfaw, Asrat; Uwimana, Brigitte; Ogbete, Chukwudi E.; Makunde, Godwill; Maraval, Isabelle; Mueller, Lukas A.; Bouniol, Alexandre; Fauvelle, Eglantine; Dufour, Dominique Share Save
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Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress Nicolas, Philippe; Shinozaki, Yoshihito; Powell, Adrian; Philippe, Glenn; Snyder, Stephen, I; Bao, Kan; Zheng, Yi; Xu, Yimin; Courtney, Lance; Vrebalov, Julia; Casteel, Clare L.; Mueller, Lukas A.; Fei, Zhangjun; Giovannoni, James J.; Rose, Jocelyn K. C.; Catala, Carmen Share Save
Genome sequence for the blue-flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae Powell, Adrian F.; Zhang, Jing; Hauser, Duncan; Vilela, Julianne A.; Hu, Alice; Gates, Daniel J.; Mueller, Lukas A.; Li, Fay-Wei; Strickler, Susan R.; Smith, Stacey D. Share Save
Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn' disease Zhang, Shiying; Morgan, Xochitl; Dogan, Belgin; Martin, Francois-Pierre; Strickler, Suzy; Oka, Akihiko; Herzog, Jeremy; Liu, Bo; Dowd, Scot E.; Huttenhower, Curtis; Pichaud, Matthieu; Dogan, Esra I.; Satsangi, Jack; Longman, Randy; Yantiss, Rhonda; Mueller, Lukas A.; Scherl, Ellen J.; Sartor, R. Balfour; Simpson, Kenneth W. Share Save
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity Powell, Adrian F.; Feder, Ari; Li, Jie; Schmidt, Maximilian H. -W.; Courtney, Lance; Alseekh, Saleh; Jobson, Emma M.; Vogel, Alexander; Xu, Yimin; Lyon, David; Dumschott, Kathryn; McHale, Marcus; Sulpice, Ronan; Bao, Kan; Lal, Rohit; Duhan, Asha; Hallab, Asis; Denton, Alisandra K.; Bolger, Marie E.; Fernie, Alisdair R.; Hind, Sarah R.; Mueller, Lukas A.; Martin, Gregory B.; Fei, Zhangjun; Martin, Cathie; Giovannoni, James J.; Strickler, Susan R.; Usadel, Bjoern Share Save
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A population based expression atlas provides insights into disease resistance and other physiological traits in cassava (Manihot esculenta Crantz) Ogbonna, Alex C.; Ramu, Punna; Esuma, Williams; Nandudu, Leah; Morales, Nicolas; Powell, Adrian; Kawuki, Robert; Bauchet, Guillaume; Jannink, Jean-Luc; Mueller, Lukas A. Share Save
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago Raharimalala, Nathalie; Rombauts, Stephane; McCarthy, Andrew; Garavito, Andrea; Orozco-Arias, Simon; Bellanger, Laurence; Morales-Correa, Alexa Yadira; Froger, Solene; Michaux, Stephane; Berry, Victoria; Metairon, Sylviane; Fournier, Coralie; Lepelley, Maud; Mueller, Lukas; Couturon, Emmanuel; Hamon, Perla; Rakotomalala, Jean-Jacques; Descombes, Patrick; Guyot, Romain; Crouzillat, Dominique Share Save
Current status and impending progress for cassava structural genomics (Feb, 10.1007/s11103-020-01104-w, 2021) Lyons, Jessica B.; Bredeson, Jessen V.; Mansfeld, Ben N.; Bauchet, Guillaume Jean; Berry, Jeffrey; Boyher, Adam; Mueller, Lukas A.; Rokhsar, Daniel S.; Bart, Rebecca S. Share Save
The 'Tommy Atkins' mango genome reveals candidate genes for fruit quality Bally, Ian S. E.; Bombarely, Aureliano; Chambers, Alan H.; Cohen, Yuval; Dillon, Natalie L.; Innes, David J.; Islas-Osuna, Maria A.; Kuhn, David N.; Mueller, Lukas A.; Ophir, Ron; Rambani, Aditi; Sherman, Amir; Yan, Haidong Share Save
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