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André Franke

Kiel University

152H-index
1.2KPaper Count
10.2WCitation Count
Published Papers 516
Publication Date
Maternal influences on infant gut microbiome and health
errNature
IF48.5
err2026-08-12
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errOAAI
errTrishla Sinha; Siobhan Brushett; Asier Fernández-Pato; Sanzhima Garmaeva; Sergio Andreu-Sánchez; Johanne E. Spreckels; Cyrus A. Mallon; Nataliia Kuzub; Milla Brandao Gois; Jiafei Wu; Marloes Kruk; Soesma A. Jankipersadsing; Jackie A. M. Dekens; Ranko Gacesa; Arnau Vich Vila; Corinna Bang; Corine Perenboom; Andre Franke; Hanne L. P. Tytgat; Sara Colombo Mottaz; Lilian Peters; Ank de Jonge; Henkjan J. Verkade; Morris A. Swertz; Cisca Wijmenga; Folkert Kuipers; Sicco Scherjon; Jan Sikkema; Aline B. Sprikkelman; Marlou L. A. de Kroon; Jelmer R. Prins; Sanne J. Gordijn; Gerard H. Koppelman; Sijmen A. Reijneveld; Jingyuan Fu; Moran Yassour; Alexander Kurilshikov; Alexandra Zhernakova
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Eukaryotic and bacterial gut communities vary along a lifestyle-associated urbanization gradient: comparative analysis of Germany and Madagascar
err2026-07-16
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errOAAI
errJohanna Saalfrank; Malte Christoph Rühlemann; Philipp Rausch; Jana Christina Hey; Rivo Andry Rakotoarivelo; Tahinamandranto Rasamoelina; Raphael Rakotozandrindrainy; Njari Randriamampionona; Norbert Georg Schwarz; Ravo Razafindrakoto; Daniela Fusco; Andre Franke; Corinna Bang
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The effect of SSRI/SNRI antidepressant treatment on the gut microbiota of patients with major depressive disorder
err2026-07-16
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errOAAI
errEugenia Emile Natasha; Danique Mulder; Leon Fehse; Nils R. Winter; Lukas Fisch; Marius Welzel; Corinna Bang; Susanne Meinert; Kira Flinkenflügel; Tiana Borgers; Janik Goltermann; Elisabeth J. Leehr; Carsten Culmsee; Frederike Stein; Florian Thomas-Odenthal; Paula Usemann; Lea Teutenberg; Igor Nenadic; Benjamin Straube; Nina Alexander; Hamidreza Jamalabadi; Andreas Jansen; Robert Nitsch; Andreas Lügering; Andre Franke; Udo Dannlowski; Tilo Kircher; Dominik Heider; Tim Hahn; Janna N. Vrijsen; Philip van Eijndhoven; Indira Tendolkar; Andreas Reif; Sharmili Edwin Thanarajah; Silke Matura; Alejandro Arias Vasquez; Mirjam Bloemendaal
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Genome-scale metabolic models predict diet- and lifestyle-driven shifts of ecological interactions in the gut microbiome
err2026-07-03
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errOAAI
errGeorgios Marinos; Karlis Arturs Moors; Kristina Schlicht; Malte Rühlemann; Silvio Waschina; Wolfgang Lieb; Andre Franke; Matthias Laudes; Mathieu Groussin; Mathilde Poyet; Christoph Kaleta; A. Samer Kadibalban
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TOFU-MAaPO: fast, scalable and reproducible analysis of large metagenome sequence data from the Sequence Read Archive
err2026-06-11
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errOAAI
errEike Matthias Wacker; Malte Christoph Rühlemann; Andre Franke; David Ellinghaus
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Large-scale analysis of temporal gene expression variation in peripheral blood
err2026-05-29
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errOAAI
errNeha Mishra; Franziska Kimmig; Doris Vandeputte; Valentina Talevi; Lindsey De Commer; Chloe Verspecht; Arnau Vich Vila; Julia S. El-Sayed Moustafa; Lukasz Kreft; Alexander Botzki; Youssef El Darzi; Sebastian Proost; Lindsay Devolder; Dongmeng Wang; Joana P. Bernardes; N. Ahmad Aziz; Andre Franke; Stefan Schreiber; Emmanouil T. Dermitzakis; Sara Vieira-Silva; Gwen Falony; Kerrin S. Small; Monique M. B. Breteler; Joachim L. Schultze; Jeroen Raes; Philip Rosenstiel
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Long-distance genetic relatedness in megalithic central Europe
errScience
IF45.8
err2026-05-21
err0
PREAI
errNicolas Antonio da Silva; Almut Nebel; Daniel Kolbe; Daniel Anton Myburgh; Florian Klimscha; Irina Görner; Katharina Fuchs; Christian Meyer; Kerstin Schierhold; Michael Rind; Robert Hoffmann; Andre Franke; John Meadows; Christoph Rinne; Johannes Müller; Ben Krause-Kyora
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Intrahepatic T cell analysis reveals Th17 and MAIT17 enrichment in primary sclerosing cholangitis
err2026-04-17
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errOAAI
errLisa R.V. Brynjulfsen; Hesham ElAbd; Jonas Øgaard; Markus S. Jördens; Amber G. Bozward; Daniel Kearns; Xiaojun Jiang; Trine Folseraas; Palak J. Trivedi; Ye H. Oo; Andre Franke; Tom H. Karlsen; Espen Melum; Brian K. Chung
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Compositional and functional differences of gut microbiome and metabolome inform pathogenesis of cholestatic liver disease
err2026-04-13
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errOAAI
errMarios Nikolaidis; Chang Hu; Brian D. Juran; Bryan M. McCauley; Erik M. Schlicht; Jackie K. Bianchi; Ahmad H. Ali; Venetia Tragaki; Elizabeth J. Atkinson; Stephen Johnson; Ruben A. Mars; John E. Eaton; Elizabeth J. Carey; Andre Franke; Christoph Schramm; Purna C. Kashyap; Young-Mi Go; ViLinh Tran; Sami Teeny; Dean P. Jones; Caroline W. Grant; Arjun P. Athreya; Gary W. Miller; Nicholas F. LaRusso; Gregory J. Gores; Tom H. Karlsen; Johannes R. Hov; Grigorios D. Amoutzias; Konstantinos N. Lazaridis
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Mapping adaptive immune responses toward fungal antigens in inflammatory bowel disease using T cell repertoire sequencing and phage-immunoprecipitation sequencing
err2026-04-13
err0
errOAAI
errAya K H Mahdy; Hesham ElAbd; Melanie Prinzensteiner; Hannah Jebens; Kostas Sivickis; Petra Bacher; Thomas Vogl; Mathilde Poyet; Andre Franke; null
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HLA class I signal peptide variation predicts strength of NKG2A+ NK cell response to missing-self and risk of human disease
err2026-03-04
err0
PREAI
errZhansong Lin; Arman A. Bashirova; Cian Callahan; George W. Nelson; Emma Robinson; Mathias Viard; Minzhong Tang; Allan Hildesheim; Andre Franke; John D. Rioux; Wilfredo Garcia-Beltran; Mary Carrington
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NOD-like receptor repertoire in the chromosome-level genome of the demosponge Dysidea avara (Schmidt; 1862)
err2026-02-03
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errOAAI
errVasiliki Koutsouveli; Montserrat Torres-Oliva; Angela M. Marulanda-Gomez; Andre Franke; Janina Fuß; Ruth A. Schmitz; Ute Hentschel; Thorsten B. H. Reusch; Lucía Pita
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T cell receptor clonotypes predict human leukocyte antigen allele carriage and antigen exposure history
err2026-01-13
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errOAAI
errHesham ElAbd; Aya K. H. Mahdy; Eike Matthias Wacker; Maria Gretsova; David Ellinghaus; Astrid Dempfile; Andre Franke
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First insights into microbial changes within an Inflammatory Bowel Disease Family Cohort study
err2025-12-31
err0
PREAI
errRausch, Philipp; Ratjen, Ilka; Tittmann, Lukas; Enderle, Janna; Wacker, Eike Matthias; Jaeger, Kathrin; Ruhlemann, Malte Christoph; Franzpotter, Katrin; Ellul, Pierre; Kruse, Robert; Halfvarson, Jonas; Roggenbuck, Dirk; Ellinghaus, David; Jacobs, Gunnar; Krawczak, Michael; Schreiber, Stefan; Bang, Corinna; Lieb, Wolfgang; Franke, Andre
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Genomic and transcriptomic analyses of aortic stenosis enhance therapeutic target discovery and disease prediction
err2025-12-19
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errOAAI
errAeron M. Small; Ta-Yu Yang; Shinsuke Itoh; Sébastien Thériault; Line Dufresne; Ryo Kurosawa; Issei Komuro; Koichi Matsuda; Ha My T. Vy; Eric H. Farber-Eger; Lauren Lee Shaffer; Kristin M. Boulier; Kristin M. Corey; Megan E. Ramaker; Fabien Laporte; Jean-Jacques Schott; Solena Le Scouarnec; Sasha A. Singh; Abhijeet R. Sonawane; Harry A. Smith; Nicholas Rafaels; Jonas Ghouse; Anna A. Raja; Sisse R. Ostrowski; Erik Sørensen; Christina Mikkelsen; Ole B. Pedersen; Christian Erikstrup; Henrik Ullum; Gardar Sveinbjornsson; Daniel F. Gudbjartsson; Erik Abner; Jiwoo Lee; Andrea Ganna; Ulrike Nowak-Göttl; Sarah Finer; Johannes Schumacher; Carlo Maj; Baravan Al-Kassou; Georg Nickenig; Teresa Trenkwalder; Martina Dreβen; Markus Krane; Markus M. Nöthen; Marta R. Moksnes; Ben M. Brumpton; Stacey Knight; Kirk U. Knowlton; Lincoln Nadauld; Radek Debiec; Muntaser D. Musameh; Peter S. Braund; Christopher P. Nelson; Tomasz Czuba; Olle Melander; Margaret Sunitha Selvaraj; Satoshi Koyama; Rohan Bhukar; Yunfeng Ruan; Johan Ljungberg; Scott M. Damrauer; Michael G. Levin; Andre Franke; Klaus Berger; Christian T. Ruff; Giorgio E. M. Melloni; Frederick K. Kamanu; Kaoru Ito; Ron Do; Ruth J. F. Loos; Heribert Schunkert; Quinn S. Wells; Svati H. Shah; Thierry Le Tourneau; David Messika-Zeitoun; Christopher Gignoux; Henning Bundgaard; Susanna C. Larsson; Karl Michaëlsson; Hilma Holm; Anna Helgadottir; Tonu Esko; David A. van Heel; Patrick Mathieu; Nilesh J. Samani; J. Gustav Smith; Stefan Söderberg; Daniel J. Rader; Nicholas A. Marston; Marc S. Sabatine; Bogdan Pasaniuc; Kelly Cho; Peter W. F. Wilson; Christopher J. O’Donnell; Kari Stefansson; Yohan Bossé; Elena Aikawa; James C. Engert; Gina M. Peloso; Pradeep Natarajan; George Thanassoulis
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Genetic liability to psoriasis predicts severe disease outcomes
err2025-12-17
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errOAAI
errJake R. Saklatvala; Samuel Lessard; Maris Teder-Laving; Laurent F. Thomas; Ravi Ramessur; Jonas Zierer; Bjørn Olav Åsvold; Anne Barton; David Baudry; John Bowes; Ben Brumpton; Sandro Bruno; Vinod Chandran; Clément Chatelain; Emanuele de Rinaldis; James T. Elder; David Ellinghaus; John Foerster; Andre Franke; Dafna D. Gladman; Wayne Gulliver; Ulrike Hüffmeier; Laura Huilaja; Kristian Hveem; Shameer Khader; Külli Kingo; Katherine Klinger; Frank Kolbinger; Sulev Kõks; Wilson Liao; Rajan P. Nair; Joanne Nititham; Proton Rahman; André Reis; Manpreet K. Sagoo; Philip E. Stuart; Kaisa Tasanen; Tanel Traks; Lam C. Tsoi; Steffen Uebe; Katie Watts; Jonathan N. Barker; Satveer K. Mahil; Sinéad M. Langan; Sara J. Brown; Mari Løset; Lavinia Paternoster; Nick Dand; Catherine H. Smith; Michael A. Simpson
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Cross-species engraftment biases and metabolic divergence in gnotobiotic mice humanized with ulcerative colitis microbiota
err2025-11-24
err0
errOAAI
errMartina A. Guggeis; Nadia Andrea Andreani; Víctor A. López-Agudelo; Florian Tran; A. Samer Kadibalban; Karlis Arturs Moors; Georgios Marinos; Abdulgawaad Saboukh; Danielle Harris; Maren Falk-Paulsen; Saskia Weber-Stiehl; Lea Järke; Felix Sommer; Lina Welz; Corinna Bang; Andre Franke; Cecilia J. Chung; Christina Bronowski; Sven Schuchardt; Sven Künzel; Konrad Aden; Stefan Schreiber; Christoph Kaleta; John F. Baines; Philip Rosenstiel
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Splicing-aware scRNA-Seq resolution reveals execution-ready programs in effector Tregs
err2025-11-01
err0
PREAI
errLukyanov, Daniil K.; Egorov, Evgeniy S.; Kriukova, Valeriia V.; Syrko, Denis; Kotliar, Victor V.; Ladell, Kristin; Price, David A.; Franke, Andre; Chudakov, Dmitry M.
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HLA-DRB1*15:01 is associated with a reduced likelihood of longevity in northern European men
err2025-10-22
err0
errOAAI
errNicolás Mendoza-Mejía; Daniel Kolbe; Onur Özer; Janina Dose; Guillermo G. Torres; Andre Franke; Marianne Nygaard; Almut Nebel
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