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Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease Hou, Lei; Xiong, Xushen; Park, Yongjin; Boix, Carles; James, Benjamin; Sun, Na; He, Liang; Patel, Aman; Zhang, Zhizhuo; Molinie, Benoit; Van Wittenberghe, Nicholas; Steelman, Scott; Nusbaum, Chad; Aguet, Francois; Ardlie, Kristin G.; Kellis, Manolis Share Save
An RNA aptamer that shifts the reduction potential of metabolic cofactors Samuelian, John S.; Gremminger, Thomas J.; Song, Zhenwei; Poudyal, Raghav R.; Li, Jun; Zhou, Yuanzhe; Staller, Seth A.; Carballo, Johan A.; Roychowdhury-Saha, Manami; Chen, Shi-Jie; Burke, Donald H.; Heng, Xiao; Baum, Dana A. Share Save
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Th17 reprogramming of T cells in systemic juvenile idiopathic arthritis Henderson, Lauren A.; Hoyt, Kacie J.; Lee, Pui Y.; Rao, Deepak A.; Jonsson, A. Helena; Nguyen, Jennifer P.; Rutherford, Kayleigh; Jule, Amelie M.; Charbonnier, Louis-Marie; Case, Siobhan; Chang, Margaret H.; Cohen, Ezra M.; Dedeoglu, Fatma; Fuhlbrigge, Robert C.; Halyabar, Olha; Hazen, Melissa M.; Janssen, Erin; Kim, Susan; Lo, Jeffrey; Lo, Mindy S.; Meidan, Esra; Son, Mary Beth F.; Sundel, Robert P.; Stoll, Matthew L.; Nusbaum, Chad; Lederer, James A.; Chatila, Talal A.; Nigrovic, Peter A. Share Save
The immune cell landscape in kidneys of patients with lupus nephritis (vol 20, pg 902, 2019) Arazi, Arnon; Rao, Deepak A.; Berthier, Celine C.; Davidson, Anne; Liu, Yanyan; Hoover, Paul J.; Chicoine, Adam; Eisenhaure, Thomas M.; Jonsson, A. Helena; Li, Shuqiang; Lieb, David J.; Zhang, Fan; Slowikowski, Kamil; Browne, Edward P.; Noma, Akiko; Sutherby, Danielle; Steelman, Scott; Smilek, Dawn E.; Tosta, Patti; Apruzzese, William; Massarotti, Elena; Dall'Era, Maria; Park, Meyeon; Kamen, Diane L.; Furie, Richard A.; Payan-Schober, Fernanda; Pendergraft, William F., III; McInnis, Elizabeth A.; Buyon, Jill P.; Petri, Michelle A.; Putterman, Chaim; Kalunian, Kenneth C.; Woodle, E. Steve; Lederer, James A.; Hildeman, David A.; Nusbaum, Chad; Raychaudhuri, Soumya; Kretzler, Matthias; Anolik, Jennifer H.; Brenner, Michael B.; Wofsy, David; Hacohen, Nir; Diamond, Betty Share Save
TGF-β signaling underlies hematopoietic dysfunction and bone marrow failure in Shwachman-Diamond syndrome Joyce, Cailin E.; Saadatpour, Assieh; Ruiz-Gutierrez, Melisa; Bolukbasi, Ozge Vargel; Jiang, Lan; Thomas, Dolly D.; Young, Sarah; Hofmann, Inga; Sieff, Colin A.; Myers, Kasiani C.; Whangbo, Jennifer; Libermann, Towia A.; Nusbaum, Chad; Yuan, Guo-Cheng; Shimamura, Akiko; Novina, Carl D. Share Save
The immune cell landscape in kidneys of patients with lupus nephritis Arazi, Arnon; Rao, Deepak A.; Berthier, Celine C.; Davidson, Anne; Liu, Yanyan; Hoover, Paul J.; Chicoine, Adam; Eisenhaure, Thomas M.; Jonsson, A. Helena; Li, Shuqiang; Lieb, David J.; Zhang, Fan; Slowikowski, Kamil; Browne, Edward P.; Noma, Akiko; Sutherby, Danielle; Steelman, Scott; Smilek, Dawn E.; Tosta, Patti; Apruzzese, William; Massarotti, Elena; Dall'Era, Maria; Park, Meyeon; Kamen, Diane L.; Furie, Richard A.; Payan-Schober, Fernanda; Pendergraft, William F., III; McInnis, Elizabeth A.; Buyon, Jill P.; Petri, Michelle A.; Putterman, Chaim; Kalunian, Kenneth C.; Woodle, E. Steve; Lederer, James A.; Hildeman, David A.; Nusbaum, Chad; Raychaudhuri, Soumya; Kretzler, Matthias; Anolik, Jennifer H.; Brenner, Michael B.; Wofsy, David; Hacohen, Nir; Diamond, Betty; Waguespack, Dia; Connery, Sean M.; McMahon, Maureen A.; McCune, William J.; Kado, Ruba B.; Hsu, Raymond; Cunningham, Melissa A.; Utz, Paul J.; Pichavant, Mina; Maecker, Holden T.; Gupta, Rohit; James, Judith A.; Guthridge, Joel M.; Fonseka, Chamith; der, Evan; Clancy, Robert; Tuschl, Thomas; Suryawanshi, Hemant; Fava, Andrea; Goldman, Daniel H. Share Save
Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry Zhang, Fan; Wei, Kevin; Slowikowski, Kamil; Fonseka, Chamith Y.; Rao, Deepak A.; Kelly, Stephen; Goodman, Susan M.; Tabechian, Darren; Hughes, Laura B.; Salomon-Escoto, Karen; Watts, Gerald F. M.; Jonsson, A. Helena; Rangel-Moreno, Javier; Meednu, Nida; Rozo, Cristina; Apruzzese, William; Eisenhaure, Thomas M.; Lieb, David J.; Boyle, David L.; Mandelin, Arthur M., II; Boyce, Brendan F.; DiCarlo, Edward; Gravallese, Ellen M.; Gregersen, Peter K.; Moreland, Larry; Firestein, Gary S.; Hacohen, Nir; Nusbaum, Chad; Lederer, James A.; Perlman, Harris; Pitzalis, Costantino; Filer, Andrew; Holers, V. Michael; Bykerk, Vivian P.; Donlin, Laura T.; Anolik, Jennifer H.; Brenner, Michael B.; Raychaudhuri, Soumya; Albrecht, Jennifer; Bridges, S. Louis, Jr.; Buckley, Christopher D.; Buckner, Jane H.; Dolan, James; Guthridge, Joel M.; Gutierrez-Arcelus, Maria; Ivashkiv, Lionel B.; James, Eddie A.; James, Judith A.; Keegan, Josh; Lee, Yvonne C.; McGeachy, Mandy J.; McNamara, Michael A.; Mears, Joseph R.; Mizoguchi, Fumitaka; Nguyen, Jennifer P.; Noma, Akiko; Orange, Dana E.; Rohani-Pichavant, Mina; Ritchlin, Christopher; Robinson, William H.; Seshadri, Anupamaa; Sutherby, Danielle; Seifert, Jennifer; Turner, Jason D.; Utz, Paul J. Share Save
SvABA: genome-wide detection of structural variants and indels by local assembly Wala, Jeremiah A.; Bandopadhayay, Pratiti; Greenwald, Noah F.; O'Rourke, Ryan; Sharpe, Ted; Stewart, Chip; Schumacher, Steve; Li, Yilong; Weischenfeldt, Joachim; Yao, Xiaotong; Nusbaum, Chad; Campbell, Peter; Getz, Gad; Meyerson, Matthew; Zhang, Cheng-Zhong; Imielinski, Marcin; Beroukhim, Rameen Share Save
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Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome Hamilton, Eileen P.; Kapusta, Aurelie; Huvos, Piroska E.; Bidwell, Shelby L.; Zafar, Nikhat; Tang, Haibao; Hadjithomas, Michalis; Krishnakumar, Vivek; Badger, Jonathan H.; Caler, Elisabet V.; Russ, Carsten; Zeng, Qiandong; Fan, Lin; Levin, Joshua Z.; Shea, Terrance; Young, Sarah K.; Hegarty, Ryan; Daza, Riza; Gujja, Sharvari; Wortman, Jennifer R.; Birren, Bruce W.; Nusbaum, Chad; Thomas, Jainy; Carey, Clayton M.; Pritham, Ellen J.; Feschotte, Cedric; Noto, Tomoko; Mochizuki, Kazufumi; Papazyan, Romeo; Taverna, Sean D.; Dear, Paul H.; Cassidy-Hanley, Donna M.; Xiong, Jie; Miao, Wei; Orias, Eduardo; Coyne, Robert S. Share Save
Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq Busby, Michele; Xue, Catherine; Li, Catherine; Farjoun, Yossi; Gienger, Elizabeth; Yofe, Ido; Gladden, Adrianne; Epstein, Charles B.; Cornett, Evan M.; Rothbart, Scott B.; Nusbaum, Chad; Goren, Alon Share Save
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Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts Ma, Liang; Chen, Zehua; Huang, Da Wei; Kutty, Geetha; Ishihara, Mayumi; Wang, Honghui; Abouelleil, Amr; Bishop, Lisa; Davey, Emma; Deng, Rebecca; Deng, Xilong; Fan, Lin; Fantoni, Giovanna; Fitzgerald, Michael; Gogineni, Emile; Goldberg, Jonathan M.; Handley, Grace; Hu, Xiaojun; Huber, Charles; Jiao, Xiaoli; Jones, Kristine; Levin, Joshua Z.; Liu, Yueqin; Macdonald, Pendexter; Melnikov, Alexandre; Raley, Castle; Sassi, Monica; Sherman, Brad T.; Song, Xiaohong; Sykes, Sean; Tran, Bao; Walsh, Laura; Xia, Yun; Yang, Jun; Young, Sarah; Zeng, Qiandong; Zheng, Xin; Stephens, Robert; Nusbaum, Chad; Birren, Bruce W.; Azadi, Parastoo; Lempicki, Richard A.; Cuomo, Christina A.; Kovacs, Joseph A. Share Save
Cervicovaginal Bacteria Are a Major Modulator of Host Inflammatory Responses in the Female Genital Tract Anahtar, Melis N.; Byme, Elizabeth H.; Doherty, Kathleen E.; Bowman, Brittany A.; Yamamoto, Hidemi S.; Soumillon, Magali; Padavattan, Nikita; Ismail, Nasreen; Moodley, Amber; Sabatini, Mary E.; Ghebremichael, Musie S.; Nusbaum, Chad; Huttenhower, Curtis; Virgin, Herbert W.; Ndung'u, Thumbi; Dong, Krista L.; Walker, Bruce D.; Fichorova, Raina N.; Kwon, Douglas S. Share Save
Comprehensive variation discovery in single human genomes Weisenfeld, Neil I.; Yin, Shuangye; Sharpe, Ted; Lau, Bayo; Hegarty, Ryan; Holmes, Laurie; Sogoloff, Brian; Tabbaa, Diana; Williams, Louise; Russ, Carsten; Nusbaum, Chad; Lander, Eric S.; MacCallum, Lain; Jaffe, David B. Share Save
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