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William J.R. Longabaugh

Brown University

22H-index
59Paper Count
2.8KCitation Count
Published Papers 15
Publication Date
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The ISB Cancer Gateway in the Cloud (ISB-CGC): Access, explore and analyze large-scale cancer data through the Google Cloud
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errSeidl, Fabian; Hagen, Lauren; Wilson, Jacob; Aguilar, Boris; Bleich, Deena; Wolfe, Lauren; Gundluru, Poojitha; Venkatesan, Prema; Tian, Mi; Paquette, Suzanne; Lee, Elaine; Huffman, Danna; Pot, David; Longabaugh, William
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The NCI Imaging Data Commons as a platform for reproducible research in computational pathology
errCOMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
IF4.8
err2023-12-01
err4
errOAAI
errSchacherer, Daniela P.; Herrmann, Markus D.; Clunie, David A.; Hoefener, Henning; Clifford, William; Longabaugh, William J. R.; Pieper, Steve; Kikinis, Ron; Fedorov, Andrey; Homeyer, Andre
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National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence
errRADIOGRAPHICS
IF5.5
err2023-12-01
err10
PREAI
errFedorov, Andrey; Longabaugh, William J. R.; Pot, David; Clunie, David A.; Pieper, Steven D.; Gibbs, David L.; Bridge, Christopher; Herrmann, Markus D.; Homeyer, Andre; Lewis, Rob; Aerts, Hugo J. W. L.; Krishnaswamy, Deepa; Thiriveedhi, Vamsi Krishna; Ciausu, Cosmin; Schacherer, Daniela P.; Bontempi, Dennis; Pihl, Todd; Wagner, Ulrike; Farahani, Keyvan; Kim, Erika; Kikinis, Ron
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Interoperable slide microscopy viewer and annotation tool for imaging data science and computational pathology
errNATURE COMMUNICATIONS
IF15.7
err2023-03-22
err10
errOAAI
errGorman, Chris; Punzo, Davide; Octaviano, Igor; Pieper, Steven; Longabaugh, William J. R.; Clunie, David A.; Kikinis, Ron; Fedorov, Andrey Y.; Herrmann, Markus D.
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A cloud-based resource for genome coordinate-based exploration and large-scale analysis of chromosome aberrations and gene fusions in cancer
errGENES CHROMOSOMES & CANCER
IF2.8
err2023-02-13
err7
errOAAI
errWang, Janet; Zheng, Jeanne; Lee, Elaine E.; Aguilar, Boris; Phan, John; Abdilleh, Kawther; Taylor, Ronald C.; Longabaugh, William; Johansson, Bertil; Mertens, Fredrik; Mitelman, Felix; Pot, David; LaFramboise, Thomas
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errSave
The TP53 Database: transition from the International Agency for Research on Cancer to the US National Cancer Institute
errCELL DEATH AND DIFFERENTIATION
IF15.4
err2022-03-29
err76
errOAAI
errde Andrade, Kelvin Cesar; Lee, Elaine E.; Tookmanian, Elise M.; Kesserwan, Chimene A.; Manfredi, James J.; Hatton, Jessica N.; Loukissas, Jennifer K.; Zavadil, Jiri; Zhou, Lei; Olivier, Magali; Frone, Megan N.; Shahzada, Owais; Longabaugh, William J. R.; Kratz, Christian P.; Malkin, David; Hainaut, Pierre; Savage, Sharon A.
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errSave
NCI Imaging Data Commons
errCANCER RESEARCH
IF16.6
err2021-06-15
err41
errOAAI
errFedorov, Andrey; Longabaugh, William J. R.; Pot, David; Clunie, David A.; Pieper, Steve; Aerts, Hugo J. W. L.; Homeyer, Andre; Lewis, Rob; Akbarzadeh, Afshin; Bontempi, Dennis; Clifford, William; Herrmann, Markus D.; Hoefener, Henning; Octaviano, Igor; Osborne, Chad; Paquette, Suzanne; Petts, James; Punzo, Davide; Reyes, Madelyn; Schacherer, Daniela P.; Tian, Mi; White, George; Ziegler, Erik; Shmulevich, Ilya; Pihl, Todd; Wagner, Ulrike; Farahani, Keyvan; Kikinis, Ron
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Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development
errNATURE COMMUNICATIONS
IF15.7
err2020-12-04
err37
errOAAI
errCary, Gregory A.; McCauley, Brenna S.; Zueva, Olga; Pattinato, Joseph; Longabaugh, William; Hinman, Veronica F.
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errSave
Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis
errMOLECULAR CELL
IF16.6
err2020-06-01
err81
errOAAI
errGillespie, Mark A.; Palii, Carmen G.; Sanchez-Taltavull, Daniel; Shannon, Paul; Longabaugh, William J. R.; Downes, Damien J.; Sivaraman, Karthi; Espinoza, Herbert M.; Hughes, Jim R.; Price, Nathan D.; Perkins, Theodore J.; Ranish, Jeffrey A.; Brand, Marjorie
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The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research
errCANCER RESEARCH
IF16.6
err2017-10-31
err37
errOAAI
errReynolds, Sheila M.; Miller, Michael; Lee, Phyliss; Leinonen, Kalle; Paquette, Suzanne M.; Rodebaugh, Zack; Hahn, Abigail; Gibbs, David L.; Slagel, Joseph; Longabaugh, William J.; Dhankani, Varsha; Reyes, Madelyn; Pihl, Todd; Backus, Mark; Bookman, Matthew; Deflaux, Nicole; Bingham, Jonathan; Pot, David; Shmulevich, Ilya
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Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2017-06-05
err71
errOAAI
errLongabaugh, William J. R.; Zeng, Weihua; Zhang, Jingli A.; Hosokawa, Hiroyuki; Jansen, Camden S.; Li, Long; Romero-Wolf, Maile; Liu, Pentao; Kueh, Hao Yuan; Mortazavi, Ali; Rothenberg, Ellen V.
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A high-resolution network model for global gene regulation in Mycobacterium tuberculosis
errNUCLEIC ACIDS RESEARCH
IF13.1
err2014-09-17
err54
errOAAI
errPeterson, Eliza J. R.; Reiss, David J.; Turkarslan, Serdar; Minch, Kyle J.; Rustad, Tige; Plaisier, Christopher L.; Longabaugh, William J. R.; Sherman, David R.; Baliga, Nitin S.
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A gene regulatory network armature for T lymphocyte specification
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2008-12-23
err91
errOAAI
errGeorgescu, Constantin; Longabaugh, William J. R.; Scripture-Adams, Deirdre D.; David-Fung, Elizabeth-Sharon; Yui, Mary A.; Zarnegar, Mark A.; Bolouri, Hamid; Rothenberg, Ellen V.
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Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning
errDEVELOPMENT
IF3.6
err2007-05-15
err304
errOAAI
errVokes, Steven A.; Ji, Hongkai; McCuine, Scott; Tenzen, Toyoaki; Giles, Shane; Zhong, Sheng; Longabaugh, William J. R.; Davidson, Eric H.; Wong, Wing H.; McMahon, Andrew P.
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Computational representation of developmental genetic regulatory networks
errDEVELOPMENTAL BIOLOGY
IF2.1
err2005-07-01
err200
PREAI
errLongabaugh, WJR; Davidson, EH; Bolouri, H
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Research Directions

No research directions
Co-authors
Cooperation Journals
A
Andrew P. McMahon
H-index: 173 · Papers: 477
E
Eric H. Davidson
H-index: 110 · Papers: 568
I
Ilya Shmulevich
H-index: 110 · Papers: 482
P
Pierre Hainaut
H-index: 103 · Papers: 745
R
Ron Kikinis
H-index: 102 · Papers: 632
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