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Bo Wen

university of washington

54H-index
269Paper Count
2.0WCitation Count
Published Papers 90
Publication Date
Label-Free Quantification in the Crux Toolkit
err2026-06-11
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PREAI
errFrank Lawrence Nii Adoquaye Acquaye; Bo Wen; Charles E. Grant; William S. Noble; Attila Kertesz-Farkas
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Analysis of isobaric quantitative proteomic data using TMT-Integrator and FragPipe computational platform
err2026-03-02
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errOAAI
errHui-Yin Chang; Yamei Deng; Ruohong Li; Dmitry Avtonomov; Bo Wen; Sarah E. Haynes; Felipe da Veiga Leprevost; Bing Zhang; Fengchao Yu; Alexey I. Nesvizhskii
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An Efficient High-Resolution Remote Sensing Object Detection Approach Using a Multilevel Optimized RT-DETR Model
err2025-11-15
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PREAI
errLang Liu; Rui Yuan; Yong Lv; Wen Bo; Xuemin Hu; Ersegun Deniz Gedikli
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Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomics
err2025-11-06
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errOAAI
errBo Wen; Chris Hsu; David Shteynberg; Wen-Feng Zeng; Michael Riffle; Alexis Chang; Miranda C. Mudge; Brook L. Nunn; Brendan X. MacLean; Matthew D. Berg; Judit Villén; Michael J. MacCoss; William S. Noble
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A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data
err2025-07-01
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errOAAI
errJustin Sanders; Bo Wen; Paul A. Rudnick; Richard S. Johnson; Christine C. Wu; Michael Riffle; Sewoong Oh; Michael J. MacCoss; William Stafford Noble
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Intelligent Virtual Dental Implant Placement via 3D Segmentation Strategy
err2025-06-23
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PREAI
errG. Cai; B. Wen; Z. Gong; Y. Lin; H. Liu; P. Zeng; M. Shi; R. Wang; Z. Chen
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Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment
err2025-06-16
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errOAAI
errBo Wen; Jack Freestone; Michael Riffle; Michael J. MacCoss; William S. Noble; Uri Keich
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Open-Source and FAIR Research Software for Proteomics
err2025-04-01
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errOAAI
errPerez-Riverol, Yasset; Bittremieux, Wout; Noble, William S.; Martens, Lennart; Bilbao, Aivett; Lazear, Michael R.; Gruening, Bjorn; Katz, Daniel S.; MacCoss, Michael J.; Dai, Chengxin; Eng, Jimmy K.; Bouwmeester, Robbin; Shortreed, Michael R.; Audain, Enrique; Sachsenberg, Timo; Van Goey, Jeroen; Wallmann, Georg; Wen, Bo; Kall, Lukas; Fondrie, William E.
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BERT-ASC: Auxiliary-sentence construction for implicit aspect learning in sentiment analysis
err2024-12-01
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errOAAI
errMurtadha, Ahmed; Wen, Bo; Pan, Shengfeng; Su, Jianlin; Ao, Luo; Liu, Yunfeng
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Deep Learning Methods for De Novo Peptide Sequencing
err2024-11-29
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PREAI
errBittremieux, Wout; Ananth, Varun; Fondrie, William E.; Melendez, Carlo; Pominova, Marina; Sanders, Justin; Wen, Bo; Yilmaz, Melih; Noble, William S.
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Excess homocysteine inhibits pancreatic 8-cell secretory function by repressing Zbtb20 expression
err2024-05-01
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PREAI
errDing, Tianqi; Wen, Bo; Chen, Jian; Chu, Wenbin; Fan, Rong; Chen, Xuewei
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Deep Learning Prediction Boosts Phosphoproteomics-Based Discoveries Through Improved Phosphopeptide Identification
err2024-02-01
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errOAAI
errYi, Xinpei; Wen, Bo; Ji, Shuyi; Saltzman, Alexander B.; Jaehnig, Eric J.; Lei, Jonathan T.; Gao, Qiang; Zhang, Bing
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Finding haplotypic signatures in proteins
err2023-10-31
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errOAAI
errVasicek, Jakub; Skiadopoulou, Dafni; Kuznetsova, Ksenia G. .; Wen, Bo; Johansson, Stefan; Njolstad, Pal R.; Bruckner, Stefan; Kall, Lukas; Vaudel, Marc
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Rank-Aware Negative Training for Semi-Supervised Text Classification
err2023-07-12
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errOAAI
errMurtadha, Ahmed; Pan, Shengfeng; Bo, Wen; Su, Jianlin; Cao, Xinxin; Zhang, Wenze; Liu, Yunfeng
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Proteogenomic Markers of Chemotherapy Resistance and Response in Triple-Negative Breast Cancer
err2022-08-24
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errOAAI
errAnurag, Meenakshi; Jaehnig, Eric J.; Krug, Karsten; Lei, Jonathan T.; Bergstrom, Erik J.; Kim, Beom-Jun; Vashist, Tanmayi D.; Huynh, Anh Minh Tran; Dou, Yongchao; Gou, Xuxu; Huang, Chen; Shi, Zhiao; Wen, Bo; Korchina, Viktoriya; Gibbs, Richard A.; Muzny, Donna M.; Doddapaneni, Harshavardhan; Dobrolecki, Lacey E.; Rodriguez, Henry; Robles, Ana I.; Hiltke, Tara; Lewis, Michael T.; Nangia, Julie R.; Shafaee, Maryam Nemati; Li, Shunqiang; Hagemann, Ian S.; Hoog, Jeremy; Lim, Bora; Osborne, C. Kent; Mani, D. R.; Gillette, Michael A.; Zhang, Bing; Echeverria, Gloria V.; Miles, George; Rimawi, Mothaffar F.; Carr, Steven A.; Ademuyiwa, Foluso O.; Satpathy, Shankha; Ellis, Matthew J.
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A community effort to identify and correct mislabeled samples in proteogenomic studies
err2021-05-01
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errOAAI
errYoo, Seungyeul; Shi, Zhiao; Wen, Bo; Kho, SoonJye; Pan, Renke; Feng, Hanying; Chen, Hong; Carlsson, Anders; Eden, Patrik; Ma, Weiping; Raymer, Michael; Maier, Ezekiel J.; Tezak, Zivana; Johanson, Elaine; Hinton, Denise; Rodriguez, Henry; Zhu, Jun; Boja, Emily; Wang, Pei; Zhang, Bing
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