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J

Jennifer A. Doudna

Gladstone Institute of Data Science and Biotechnology

149H-index
672Paper Count
11.7WCitation Count
Published Papers 243
Publication Date
Publisher Correction: Targeting cancer-specific mutations with RNA-triggered chromatin shredding
errNature
IF48.5
err2026-08-14
err0
PREAI
errJingkun Zeng; Zhiyuan Cheng; Huadong Chen; Zhaojun Wang; Jared Thompson; Kadin T. Crosby; Hesong Han; Arushi Singhal; Wayne Ngo; Chenglong Xia; Daniel Rosas-Rivera; Zeyuan Zhang; Min Hyung Kang; Ying Mao; Morgan E. Diolaiti; Giselle C. Lee; John F. X. Diffley; Yixuan Song; Longhui Qiu; Nathan M. Krah; Niren Murthy; Ryan N. Jackson; Yang Liu; Alan Ashworth; Jennifer A. Doudna
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Structure and evolution-guided design of minimal RNA-guided nucleases
errScience
IF45.8
err2026-07-16
err0
PREAI
errPetr Skopintsev; Isabel Esain-Garcia; Evan C. DeTurk; Peter H. Yoon; Zehan Zhou; Trevor Weiss; Maris Kamalu; Ajit Chamraj; Kenneth J. Loi; Conner J. Langeberg; Ron S. Boger; Hunter Nisonoff; Hannah M. Karp; Lin-Xing Chen; Honglue Shi; Kamakshi Vohra; Jillian F. Banfield; Jamie H. D. Cate; Steven E. Jacobsen; Jennifer A. Doudna
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Harmonizing standards and resources for the medical genome
errNature
IF48.5
err2026-07-01
err0
PREAI
errEuan A. Ashley; Ash A. Alizadeh; Hanae Armitage; Ami S. Bhatt; Yair Blumenfeld; Andrew Carroll; R. Martin Chavez; Petros Giannikopoulos; Megan E. Grove; Meghan C. Halley; Kiran Khush; Niall J. Lennon; Samantha Maragh; Alexander Marson; Benedict Paten; Adam M. Phillippy; Matthew H. Porteus; Heidi L. Rehm; Bradley R. Ringeisen; Julia Salzman; Valerie A. Schneider; Fritz J. Sedlazeck; Lars M. Steinmetz; Fyodor D. Urnov; Stacia K. Wyman; Justin M. Zook; Lloyd B. Minor; Jennifer A. Doudna
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Targeting Cancer-Specific Mutations with RNA-Triggered Chromatin Shredding
errNature
IF48.5
err2026-06-08
err0
PREAI
errJingkun Zeng; Zhiyuan Cheng; Huadong Chen; Zhaojun Wang; Jared Thompson; Kadin T. Crosby; Hesong Han; Arushi Singhal; Wayne Ngo; Chenglong Xia; Daniel Rosas-Rivera; Zeyuan Zhang; Min Hyung Kang; Ying Mao; Morgan E. Diolaiti; Giselle C. Lee; John F. X. Diffley; Yixuan Song; Longhui Qiu; Nathan M. Krah; Niren Murthy; Ryan N. Jackson; Yang Liu; Alan Ashworth; Jennifer A. Doudna
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Identification of proteins influencing CRISPR-associated transposases for enhanced genome editing
err2026-01-01
err0
PREAI
errLeo C. T. Song; Amanda T. P. Alker; Agnès Oromí-Bosch; Sophia E. Swartz; Jonathan N. V. Martinson; Jigyasa Arora; Abby M. Wang; Rachel Rovinsky; Sara J. Smith; Emily C. Pierce; Adam M. Deutschbauer; Jennifer A. Doudna; Brady F. Cress; Benjamin E. Rubin
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Divergent viral phosphodiesterases for immune signaling evasion
err2025-11-25
err0
errOAAI
errErin E. Doherty; Jason Nomburg; Benjamin A. Adler; Santiago Lopez; Kendall Hsieh; Nathan Price; Nurashau Blount; Jennifer A. Doudna
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Temporal photoproximity labeling of ligand-activated EGFR neighborhoods using MultiMap
err2025-11-18
err0
errOAAI
errZhi Lin; Wayne Ngo; Yu-Ting Chou; Harry Wu; Katherine J. Susa; Young-wook Jun; Trever G. Bivona; Jennifer A. Doudna; James A. Wells
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Characterizing and controlling CRISPR repair outcomes in nondividing human cells
err2025-11-17
err0
errOAAI
errGokul N. Ramadoss; Samali J. Namaganda; Manasi M. Kumar; Jennifer R. Hamilton; Rohit Sharma; Karena G. Chow; Luke A. Workley; Bria L. Macklin; Mengyuan Sun; Alvin S. Ha; Jia-Cheng Liu; Christof Fellmann; Hannah L. Watry; Philip H. Dierks; Rudra S. Bose; Julianne Jin; Barbara S. Perez; Cindy R. Sandoval Espinoza; Madeline P. Matia; Serena H. Lu; Luke M. Judge; Brian R. Shy; Andre Nussenzweig; Britt Adamson; Niren Murthy; Jennifer A. Doudna; Martin Kampmann; Bruce R. Conklin
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Recurrent acquisition of nuclease-protease pairs in antiviral immunity
errScience
IF45.8
err2025-11-13
err0
PREAI
errOwen T. Tuck; Jason J. Hu; Santiago C. Lopez; Benjamin A. Adler; Claire E. O’Brien; Kendall Hsieh; Charlotte Meredith; Kenneth J. Loi; Peter H. Yoon; Erin E. Doherty; Arushi Lahiri; Jennifer A. Doudna
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An updated evolutionary classification of CRISPR–Cas systems including rare variants
err2025-11-06
err0
errOAAI
errKira S. Makarova; Sergey A. Shmakov; Yuri I. Wolf; Pascal Mutz; Han Altae-Tran; Chase L. Beisel; Stan J. J. Brouns; Emmanuelle Charpentier; David Cheng; Jennifer Doudna; Daniel H. Haft; Philippe Horvath; Sylvain Moineau; Francisco J. M. Mojica; Patrick Pausch; Rafael Pinilla-Redondo; Shiraz A. Shah; Virginijus Siksnys; Michael P. Terns; Jesse Tordoff; Česlovas Venclovas; Malcolm F. White; Alexander F. Yakunin; Feng Zhang; Roger A. Garrett; Rolf Backofen; John van der Oost; Rodolphe Barrangou; Eugene V. Koonin
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A miniature CRISPR–Cas10 enzyme confers immunity by inhibitory signalling
errNature
IF48.5
err2025-10-01
err0
errOAAI
errErin E. Doherty; Benjamin A. Adler; Peter H. Yoon; Kendall Hsieh; Kenneth Loi; Emily G. Armbruster; Arushi Lahiri; Cydni S. Bolling; Xander E. Wilcox; Amogha Akkati; Anthony T. Iavarone; Joe Pogliano; Jennifer A. Doudna
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Rapid two-step target capture ensures efficient CRISPR-Cas9-guided genome editing
err2025-05-01
err1
errOAAI
errShi, Honglue; Al-Sayyad, Noor; Wasko, Kevin M.; Trinidad, Marena I.; Doherty, Erin E.; Vohra, Kamakshi; Boger, Ron S.; Colognori, David; Cofsky, Joshua C.; Skopintsev, Petr; Bryant, Zev; Doudna, Jennifer A.
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Viral delivery of an RNA-guided genome editor for transgene-free germline editing in Arabidopsis
err2025-04-22
err1
errOAAI
errWeiss, Trevor; Kamalu, Maris; Shi, Honglue; Li, Zheng; Amerasekera, Jasmine; Zhong, Zhenhui; Adler, Benjamin A.; Song, Michelle M.; Vohra, Kamakshi; Wirnowski, Gabriel; Chitkara, Sidharth; Ambrose, Charlie; Steinmetz, Noah; Sridharan, Ananya; Sahagun, Diego; Banfield, Jillian F.; Doudna, Jennifer A.; Jacobsen, Steven E.
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Dynamic basis of supercoiling-dependent DNA interrogation by Cas12a via R-loop intermediates
err2025-03-26
err1
errOAAI
errAris, Kevin D. P.; Cofsky, Joshua C.; Shi, Honglue; Al-Sayyad, Noor; Ivanov, Ivan E.; Balaji, Ashwin; Doudna, Jennifer A.
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CRISPR-Cas12a bends DNA to destabilize base pairs during target interrogation
err2024-12-19
err0
errOAAI
errSoczek, Katarzyna M.; Cofsky, Joshua C.; Tuck, Owen T.; Shi, Honglue; Doudna, Jennifer A.
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RNA language models predict mutations that improve RNA function
err2024-12-05
err0
errOAAI
errShulgina, Yekaterina; Trinidad, Marena I.; Langeberg, Conner J.; Nisonoff, Hunter; Chithrananda, Seyone; Skopintsev, Petr; Nissley, Amos J.; Patel, Jaymin; Boger, Ron S.; Shi, Honglue; Yoon, Peter H.; Doherty, Erin E.; Pande, Tara; Iyer, Aditya M.; Doudna, Jennifer A.; Cate, Jamie H. D.
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SARS-CoV-2 evolution balances conflicting roles of N protein phosphorylation
err2024-11-21
err0
errOAAI
errSyed, Abdullah M.; Ciling, Alison; Chen, Irene P.; Carlson, Christopher R.; Adly, Armin N.; Martin, Hannah S.; Taha, Taha Y.; Khalid, Mir M.; Price, Nathan; Bouhaddou, Mehdi; Ummadi, Manisha R.; Moen, Jack M.; Krogan, Nevan J.; Morgan, David O.; Ott, Melanie; Doudna, Jennifer A.
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Lung and liver editing by lipid nanoparticle delivery of a stable CRISPR-Cas9 ribonucleoprotein
err2024-10-16
err2
errOAAI
errChen, Kai; Han, Hesong; Zhao, Sheng; Xu, Bryant; Yin, Boyan; Lawanprasert, Atip; Trinidad, Marena; Burgstone, Benjamin W.; Murthy, Niren; Doudna, Jennifer A.
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Oligomeric State and Drug Binding of the SARS-CoV-2 Envelope Protein Are Sensitive to the Ectodomain
err2024-08-21
err2
PREAI
errSomberg, Noah H.; Sucec, Iva; Medeiros-Silva, Joao; Jo, Hyunil; Beresis, Richard; Syed, Abdullah M.; Doudna, Jennifer A.; Hong, Mei
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Engineering self-deliverable ribonucleoproteins for genome editing in the brain (vol 15, 1727, 024)
err2024-05-01
err0
errOAAI
errChen, Kai; Stahl, Elizabeth C.; Kang, Min Hyung; Xu, Bryant; Allen, Ryan; Trinidad, Marena; Doudna, Jennifer A.
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