Atul J. Butte - Publications, H-index & Citations

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Atul J. Butte

San Francisco

111H-index

774Paper Count

6.5WCitation Count

Published Papers 203

Publication Date

HIV-seq reveals gene expression differences between HIV-transcribing cells from viremic and suppressed people with HIV

Nature Communications

IF15.7

2026-03-03

OAAI

Julie Frouard; Sushama Telwatte; Xiaoyu Luo; Natalie Gill; Reuben Thomas; Douglas Arneson; Pavitra Roychoudhury; Atul J. Butte; Joseph K. Wong; Rebecca Hoh; Steven G. Deeks; Sulggi A. Lee; Nadia R. Roan; Steven A. Yukl

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Investigating CAR-T Treatment Access for Multiple Myeloma Patients Using Real-World Evidence

Cancers

IF4.4

2026-02-26

OAAI

Jaysón Davidson; Anupama Kumar; Ayan Patel; Irene Y. Chen; Atul J. Butte; Travis Zack

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Development and validation of a generalisable machine learning algorithm for identifying interstitial lung disease cohorts: a retrospective cohort study

eClinicalMedicine

IF10

2026-02-21

OAAI

Erica Farrand; Augustine Chung; Jisha Joshua; Huawei Dong; Hunter Mills; Albert Lee; Martin Ieong; Lakshmi Radhakrishnan; Oksana Gologorskaya; Atul Butte

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Benchmarking large language models for predictive modeling in biomedical research with a focus on reproductive health

Cell Reports Medicine

IF10.6

2026-02-17

OAAI

Reuben Sarwal; Victor Tarca; Claire A. Dubin; Nikolas Kalavros; Gaurav Bhatti; Sanchita Bhattacharya; Atul Butte; Roberto Romero; Gustavo Stolovitzky; Tomiko T. Oskotsky; Adi L. Tarca; Marina Sirota

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Extracting TNFi switching reasons and trajectories from real-world data using large language models

JAMIA OPEN

IF3.4

2025-12-01

OAAI

Miao, Brenda Y.; Binvignat, Marie; Garcia-Agundez, Augusto; Bravo, Maxim; Williams, Christopher Yk; Miao, Claire Q.; Alaa, Ahmed; Rudrapatna, Vivek; Butte, Atul J.; Schmajuk, Gabriela; Yazdany, Jinoos

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Integrating Expert Knowledge into Large Language Models Improves Performance for Psychiatric Reasoning and Diagnosis

Psychiatry Research

IF3.9

2025-11-16

OAAI

Karthik V Sarma; Kaitlin E Hanss; Andrew J M Halls; Andrew Krystal; Daniel F Becker; Anne L Glowinski; Atul J Butte

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Immunological Profiling suggests an Association between Treg dysfunction and Pain in Knee Osteoarthritis

Arthritis & Rheumatology

IF10.9

2025-11-14

OAAI

Marie Binvignat; Johanna Dubois; Maria Marco Salvador; Paul Stys; Fabien Pitoiset; Alexandra Roux; Michèle Sastre; Signe Hassler; Roberta Lorenzon; Claire Ribet; Vanessa Mhanna; Hélène Vantomme; Leslie Adda; Pierre Barennes; Nicolas Coatnoan; Kenz Le Gouge; Caroline Aheng; Alice Courties; Lise Minssen; Atul J. Butte; Adrien Six; Michelle Rosenzwajg; Nicolas Tchitchek; Francis Berenbaum; David Klatzmann; Encarnita Mariotti-Ferrandiz; Jérémie Sellam

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An AI Model Classifies Risks of Early Relapse Post-CAR T Cell Therapy in a Multi-Center Real-World Population with DLBCL

Blood Advances

IF7.1

2025-09-05

OAAI

Michelle Wang; Krishna V. Komanduri; Debajyoti Datta; Ayan Patel; Barbee Whitaker; Artur Belov; Benjamin Rubin; Rohit Vashist; Rosa Rodriguez-Monguio; Pelin Cinar; Steven Anderson; Atul J. Butte

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Epistasis regulates genetic control of cardiac hypertrophy

cardiovascular research

IF10.8

2025-06-05

OAAI

Qianru Wang; Tiffany M. Tang; Michelle Youlton; Chad S. Weldy; Ana M. Kenney; Omer Ronen; J. Weston Hughes; Elizabeth T. Chin; Shirley C. Sutton; Abhineet Agarwal; Xiao Li; Merle Behr; Karl Kumbier; Christine S. Moravec; W. H. Wilson Tang; Kenneth B. Margulies; Thomas P. Cappola; Atul J. Butte; Rima Arnaout; James B. Brown; James R. Priest; Victoria N. Parikh; Bin Yu; Euan A. Ashley

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New Threshold for Defining Mild Aortic Stenosis Derived From Velocity-Encoded MRI in 60,000 Individuals

JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

IF22.3

2025-04-01

PREAI

Kany, Shinwan; Ramo, Joel T.; Playford, David; Strange, Geoff; Hou, Cody; Jurgens, Sean J.; Nauffal, Victor; Cunningham, Jonathan W.; Lau, Emily S.; Butte, Atul J.; Ho, Jennifer E.; Olgin, Jeffrey E.; Elmariah, Sammy; Lindsay, Mark E.; Chan, Yih-Kai; Stewart, Simon; Ellinor, Patrick T.; Pirruccello, James P.

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The MI-CLAIM-GEN checklist for generative artificial intelligence in health

NATURE MEDICINE

IF50

2025-02-06

PREAI

Miao, Brenda Y.; Chen, Irene Y.; Williams, Christopher Y. K.; Davidson, Jayson; Garcia-Agundez, Augusto; Sun, Shenghuan; Zack, Travis; Saria, Suchi; Arnaout, Rima; Quer, Giorgio; Sadaei, Hossein J.; Torkamani, Ali; Beaulieu-Jones, Brett; Yu, Bin; Gianfrancesco, Milena; Butte, Atul J.; Norgeot, Beau

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Repurposing an epithelial sodium channel inhibitor as a therapy for murine and human skin inflammation

SCIENCE TRANSLATIONAL MEDICINE

IF14.6

2024-12-11

PREAI

Winge, Marten C. G.; Nasrallah, Mazen; Jackrazi, Leandra V.; Guo, Konnie Q.; Fuhriman, Jessica M.; Szafran, Rebecca; Ramanathan, Muthukumar; Gurevich, Irina; Nguyen, Ngon T.; Siprashvili, Zurab; Inayathullah, Mohammed; Rajadas, Jayakumar; Porter, Douglas F.; Khavari, Paul A.; Butte, Atul J.; Marinkovich, M. Peter

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Assessing Large Language Models for Oncology Data Inference From Radiology Reports

JCO CLINICAL CANCER INFORMATICS

IF2.8

2024-12-01

OAAI

Chen, Li-Ching; Zack, Travis; Demirci, Arda; Sushil, Madhumita; Miao, Brenda; Kasap, Corynn; Butte, Atul; Collisson, Eric A.; Hong, Julian C.

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Modernizing the Data Infrastructure for Clinical Research to Meet Evolving Demands for Evidence

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

IF55

2024-10-22

PREAI

Franklin, Joseph B.; Marra, Caroline; Abebe, Kaleab Z.; Butte, Atul J.; Cook, Deborah J.; Esserman, Laura; Fleisher, Lee A.; Grossman, Cynthia I.; Kass, Nancy E.; Krumholtz, Harlan M.; Rowan, Kathy; Abernethy, Amy P.

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AGENT-BASED MODELING FOR PATIENT-CENTERED CLINICAL DECISION SUPPORT IN NEURO-ONCOLOGY

NEURO-ONCOLOGY

IF13.4

2024-10-17

PREAI

Rodriguez Almaraz, E.; Miao, B.; Yadav, Y.; de Groot, J.; Young, J.; Vo, A.; Butte, A.; Mitchel, B. S.; Raleigh, D.; Butowski, N.; Alaa, A.

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Evaluating the use of large language models to provide clinical recommendations in the Emergency Department

NATURE COMMUNICATIONS

IF15.7

2024-10-08

OAAI

Williams, Christopher Y. K.; Miao, Brenda Y.; Kornblith, Aaron E.; Butte, Atul J.

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Inhalable Stem Cell Exosomes Promote Heart Repair After Myocardial Infarction

CIRCULATION

IF38.6

2024-08-27

PREAI

Li, Junlang; Sun, Shenghuan; Zhu, Dashuai; Mei, Xuan; Lyu, Yongbo; Huang, Ke; Li, Yuan; Liu, Shuo; Wang, Zhenzhen; Hu, Shiqi; Lutz, Halle J.; Popowski, Kristen D.; Dinh, Phuong-Uyen C.; Butte, Atul J.; Cheng, Ke

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Enhancing emergency department charting: Using Generative Pre-trained Transformer-4 (GPT-4) to identify laceration repairs

ACADEMIC EMERGENCY MEDICINE

IF3.2

2024-07-31

OAAI

Bains, Jaskaran (Karan); Williams, Christopher Y. K.; Johnson, Drake; Schwartz, Hope; Sabbineni, Naina; Butte, Atul J.; Kornblith, Aaron E.

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Single-cell RNA-Seq analysis reveals cell subsets and gene signatures associated with rheumatoid arthritis disease activity

JCI INSIGHT

IF6.1

2024-07-02

OAAI

Binvignat, Marie; Miao, Brenda Y.; Wibrand, Camilla; Yang, Monica M.; Rychkov, Dmitry; Flynn, Emily; Nititham, Joanne; Tamaki, Whitney; Khan, Umair; Carvidi, Alexander; Krueger, Melissa; Niemi, Erene; Sun, Yang; Fragiadakis, Gabriela K.; Sellam, Jeremie; Mariotti-Ferrandiz, Encarnita; Klatzmann, David; Gross, Andrew J.; Ye, Chun Jimmie; Butte, Atul J.; Criswell, Lindsey A.; Nakamura, Mary C.; Sirota, Marina

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IMMUNOLOGICAL PROFILING OF PAIN IN KNEE OSTEOARTHRITIS:TREG CELLS AS POTENTIAL NEW KEY PLAYERS IN SYMPTOMATIC KNEE OSTEOARTHRITIS

ANNALS OF THE RHEUMATIC DISEASES

IF20.6

2024-06-01

PREAI

Binvignat, M.; Dubois, J.; Tchitchek, N.; Rosenzwajg, M.; Barbier, M.; Pitoiset, F.; Roux, A.; Lorenzon, R.; Hassler, S.; Ribet, C.; Courties, A.; Vantomme, H.; Adda, L.; Mhanna, V.; Barennes, P.; Stys, P.; Minssen, L.; Marie, Y.; Aheng, C.; Six, A.; Butte, A.; Berenbaum, F.; Klatzmann, D.; Mariotti-Ferrandiz, E.; Sellam., J.

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Research Directions