arrow
Back
R

Ruedi Aebersold

Institute of Molecular Systems Biology

198H-index
1.2KPaper Count
17.2WCitation Count
Published Papers 561
Publication Date
AI proteomics: from protein identification to virtual cells
err2026-07-28
err0
PREAI
errYingying Sun; Jun A; Zhiwei Liu; Rui Sun; Liujia Qian; Samuel H. Payne; Wout Bittremieux; Markus Ralser; Chen Li; Yi Chen; Zhen Dong; Yasset Perez-Riverol; Asif Khan; Chris Sander; Ruedi Aebersold; Juan Antonio Vizcaíno; Jonathan R. Krieger; Jianhua Yao; Wen Han; Linfeng Zhang; Yunping Zhu; Yue Xuan; Benjamin Boyang Sun; Liang Qiao; Henning Hermjakob; Haixu Tang; Huanhuan Gao; Yamin Deng; Qing Zhong; Cheng Chang; Nuno Bandeira; Ming Li; Weinan E; Siqi Sun; Yuedong Yang; Gilbert S. Omenn; Yue Zhang; Ping Xu; Yan Fu; Xiaowen Liu; Christopher M. Overall; Yu Wang; Eric W. Deutsch; Luonan Chen; Jürgen Cox; Vadim Demichev; Fuchu He; Jiaxing Huang; Huilin Jin; Chao Liu; Nan Li; Zhongzhi Luan; Jiangning Song; Kaicheng Yu; Wanggen Wan; Tai Wang; Kang Zhang; Le Zhang; Peter A. Bell; Matthias Mann; Bing Zhang; Tiannan Guo
errShare
errSave
Complex assembly and activity states as multifaceted protein attributes explaining phenotypic variability
err2026-07-22
err0
errOAAI
errGeorge Rosenberger; Peng Xue; Isabell Bludau; Claudia Martelli; Evan Williams; Ben C Collins; Andrea Califano; Yansheng Liu; Ruedi Aebersold
errShare
errSave
Spatial distribution of the proteome in the human body and in cancers
errNature
IF48.5
err2026-06-17
err0
errOAAI
errLiang Yue; Wenhao Jiang; Sainan Li; Meng Luo; Ning Fan; Xiaolu Zhan; Rui Sun; Honghan Cheng; Zhangzhi Xue; Tong Liu; Qianhe Zhou; Kexin Chen; Tian Lu; Fang Guo; Dongwei Li; Weigang Ge; Zongxiang Nie; Mengge Lyu; Jun A; Yingrui Wang; Yingdan Chen; Zhenhai Fu; Nan Xiang; Lu Li; Fengchao Yu; Guo Ci Teo; Alexey I. Nesvizhskii; Meng Wang; Michael P. Snyder; Ben C. Collins; Qi Xiao; Ruedi Aebersold; Fei Xu; Hui Yang; Sijia Zhang; Yi Han; Yi Zhu; Yong Ji; Yan Li; Tiannan Guo
errShare
errSave
LysG-driven transcriptional network rewiring underlies lineage-specific phenotypes in Mycobacterium tuberculosis
err2026-03-23
err0
errOAAI
errAmir Banaei-Esfahani; Sonia Borrell; Andrej Trauner; Sebastian M. Gygli; Tige R. Rustad; Julia Feldmann; Ludovic C. Gillet; Olga T. Schubert; Christian Beisel; David R. Sherman; Ruedi Aebersold; Sebastien Gagneux; Ben C. Collins
errShare
errSave
The 2025 Westlake Autumn Symposium for Al Proteomics and Virtual Cell
err2026-03-07
err0
errOAAI
errRui Sun; Ruedi Aebersold; Qi Xiao; Matthias Mann; Yan Zhou; Albert J R Heck; Yingrui Wang; Uwe Völker; Xue Cai; Charles Boone; Zizhuo Zhou; Ming Li; Zhen Dong; Brenda Andrews; Shuaiyao Wang; Joseph Schacherer; Connie Jimenez; Bernd Wollscheid; Liang Yue; Ben C Collins; Heng Jiang; Dong Wang; Liujia Qian; Jia-Xing Yue; Yingying Sun; Edouard Nice; Xiaofan Zhang; Yasset Perez-Riverol; A Jun; Chris Sander; Henning Hermjakob; Wout Bittremieux; Wilson Goh Wen Bin; Ge Gao; Peijie Zhou; Siqi Sun; Han Wen; Ziyan Xu; Tiannan Guo
errShare
errSave
Proteomic-based stratification of intermediate-risk prostate cancer patients (vol 7, e202302146, 2023)
err2025-12-01
err0
errOAAI
errZhong, Qing; Sun, Rui; Aref, Adel T.; Noor, Zainab; Anees, Asim; Zhu, Yi; Lucas, Natasha; Poulos, Rebecca C.; Lyu, Mengge; Zhu, Tiansheng; Chen, Guo-Bo; Wang, Yingrui; Ding, Xuan; Rutishauser, Dorothea; Rupp, Niels J.; Rueschoff, Jan H.; Poyet, Cedric; Hermanns, Thomas; Fankhauser, Christian; Rodriguez Martinez, Maria; Shao, Wenguang; Buljan, Marija; Neumann, Janis Frederick; Beyer, Andreas; Hains, Peter G.; Reddel, Roger R.; Robinson, Phillip J.; Aebersold, Ruedi; Guo, Tiannan; Wild, Peter J.
errShare
errSave
A tissue-specific atlas of protein-protein associations enables prioritization of candidate disease genes
err2025-05-02
err1
errOAAI
errTrip, Diederik S. Laman; van Oostrum, Marc; Memon, Danish; Frommelt, Fabian; Baptista, Delora; Panneerselvam, Kalpana; Bradley, Glyn; Licata, Luana; Hermjakob, Henning; Orchard, Sandra; Trynka, Gosia; Mcdonagh, Ellen M.; Fossati, Andrea; Aebersold, Ruedi; Gstaiger, Matthias; Wollscheid, Bernd; Beltrao, Pedro
errShare
errSave
π-HuB: the proteomic navigator of the human body (Vol 636, pg 322, 2024)
errNATURE
IF48.5
err2024-12-23
err0
PREAI
errHe, Fuchu; Aebersold, Ruedi; Baker, Mark S.; Bian, Xiuwu; Bo, Xiaochen; Chan, Daniel W.; Chang, Cheng; Chen, Luonan; Chen, Xiangmei; Chen, Yu-Ju; Cheng, Heping; Collins, Ben C.; Corrales, Fernando; Cox, Juergen; E, Weinan; Van Eyk, Jennifer E.; Fan, Jia; Faridi, Pouya; Figeys, Daniel; Gao, George Fu; Gao, Wen; Gao, Zu-Hua; Goda, Keisuke; Goh, Wilson Wen Bin; Gu, Dongfeng; Guo, Changjiang; Guo, Tiannan; He, Yuezhong; Heck, Albert J. R.; Hermjakob, Henning; Hunter, Tony; Iyer, Narayanan Gopalakrishna; Jiang, Ying; Jimenez, Connie R.; Joshi, Lokesh; Kelleher, Neil L.; Li, Ming; Li, Yang; Lin, Qingsong; Liu, Cui Hua; Liu, Fan; Liu, Guang-Hui; Liu, Yansheng; Liu, Zhihua; Low, Teck Yew; Lu, Ben; Mann, Matthias; Meng, Anming; Moritz, Robert L.; Nice, Edouard; Ning, Guang; Omenn, Gilbert S.; Overall, Christopher M.; Palmisano, Giuseppe; Peng, Yaojin; Pineau, Charles; Poon, Terence Chuen Wai; Purcell, Anthony W.; Qiao, Jie; Reddel, Roger R.; Robinson, Phillip J.; Roncada, Paola; Sander, Chris; Sha, Jiahao; Song, Erwei; Srivastava, Sanjeeva; Sun, Aihua; Sze, Siu Kwan; Tang, Chao; Tang, Liujun; Tian, Ruijun; Vizcaino, Juan Antonio; Wang, Chanjuan; Wang, Chen; Wang, Xiaowen; Wang, Xinxing; Wang, Yan; Weiss, Tobias; Wilhelm, Mathias; Winkler, Robert; Wollscheid, Bernd; Wong, Limsoon; Xie, Linhai; Xie, Wei; Xu, Tao; Xu, Tianhao; Yan, Liying; Yang, Jing; Yang, Xiao; Yates, John; Yun, Tao; Zhai, Qiwei; Zhang, Bing; Zhang, Hui; Zhang, Lihua; Zhang, Lingqiang; Zhang, Pingwen; Zhang, Yukui; Zheng, Yu Zi; Zhong, Qing; IT-HuB Consortium, Daniel W.
errShare
errSave
The 2024 Report on the Human Proteome from the HUPO Human Proteome Project
err2024-11-08
err0
PREAI
errOmenn, Gilbert S.; Orchard, Sandra; Lane, Lydie; Lindskog, Cecilia; Pineau, Charles; Overall, Christopher M.; Budnik, Bogdan; Mudge, Jonathan M.; Packer, Nicolle H.; Weintraub, Susan T.; Roehrl, Michael H. A.; Nice, Edouard; Guo, Tiannan; Van Eyk, Jennifer E.; Voelker, Uwe; Zhang, Gong; Bandeira, Nuno; Aebersold, Ruedi; Moritz, Robert L.; Deutsch, Eric W.
errShare
errSave
From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions (vol 17, e9536, 2021)
err2024-10-01
err0
errOAAI
errMori, Matteo; Zhang, Zhongge; Banaei-Esfahani, Amir; Lalanne, Jean-Benoit; Okano, Hiroyuki; Collins, Ben C.; Schmidt, Alexander; Schubert, Olga T.; Lee, Deok-Sun; Li, Gene-Wei; Aebersold, Ruedi; Hwa, Terence; Ludwig, Christina
errShare
errSave
DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes
err2024-03-26
err6
errOAAI
errFrommelt, Fabian; Fossati, Andrea; Uliana, Federico; Wendt, Fabian; Xue, Peng; Heusel, Moritz; Wollscheid, Bernd; Aebersold, Ruedi; Ciuffa, Rodolfo; Gstaiger, Matthias
errShare
errSave
Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans
err2024-01-04
err6
errOAAI
errTeuscher, Alina C.; Statzer, Cyril; Goyala, Anita; Domenig, Seraina A.; Schoen, Ingmar; Hess, Max; Hofer, Alexander M.; Fossati, Andrea; Vogel, Viola; Goksel, Orcun; Aebersold, Ruedi; Ewald, Collin Y.
errShare
errSave
Proteomic-based stratification of intermediate-risk prostate cancer patients
err2023-12-04
err8
errOAAI
errZhong, Qing; Sun, Rui; Aref, Adel; Noor, Zainab; Anees, Asim; Zhu, Yi; Lucas, Natasha; Poulos, Rebecca C.; Lyu, Mengge; Zhu, Tiansheng; Chen, Guo-Bo; Wang, Yingrui; Ding, Xuan; Rutishauser, Dorothea; Rupp, Niels J.; Rueschoff, Jan H.; Poyet, Cedric; Hermanns, Thomas; Fankhauser, Christian; Martinez, Maria Rodriguez; Shao, Wenguang; Buljan, Marija; Neumann, Janis Frederick; Beyer, Andreas; Hains, Peter G.; Reddel, Roger R.; Robinson, Phillip J.; Aebersold, Ruedi; Guo, Tiannan; Wild, Peter J.
errShare
errSave
Integrative solution structure of PTBP1-IRES complex reveals strong compaction and ordering with residual conformational flexibility
err2023-10-13
err3
errOAAI
errDorn, Georg; Gmeiner, Christoph; de Vries, Tebbe; Dedic, Emil; Novakovic, Mihajlo; Damberger, Fred F.; Maris, Christophe; Finol, Esteban; Sarnowski, Chris P.; Kohlbrecher, Joachim; Welsh, Timothy J.; Bolisetty, Sreenath; Mezzenga, Raffaele; Aebersold, Ruedi; Leitner, Alexander; Yulikov, Maxim; Jeschke, Gunnar; Allain, Frederic H. -T.
errShare
errSave
A computational framework for the inference of protein complex remodeling from whole-proteome measurements
err2023-09-25
err3
errOAAI
errBuljan, Marija; Banaei-Esfahani, Amir; Blattmann, Peter; Meier-Abt, Fabienne; Shao, Wenguang; Vitek, Olga; Tang, Hua; Aebersold, Ruedi
errShare
errSave
Genetic effects on molecular network states explain complex traits
err2023-07-24
err4
errOAAI
errWeith, Matthias; Grossbach, Jan; Clement-Ziza, Mathieu; Gillet, Ludovic; Rodriguez-Lopez, Maria; Marguerat, Samuel; Workman, Christopher T.; Picotti, Paola; Baehler, Jurg; Aebersold, Ruedi; Beyer, Andreas
errShare
errSave
A DNA-PK phosphorylation site on MET regulates its signaling interface with the DNA damage response
err2023-05-15
err3
errOAAI
errKoch, Jonas P.; Roth, Selina M.; Quintin, Aurelie; Gavini, Jacopo; Orlando, Eleonora; Riedo, Rahel; Pozzato, Chiara; Hayrapetyan, Liana; Aebersold, Ruedi; Stroka, Deborah M. M.; Aebersold, Daniel M. M.; Medo, Matus; Zimmer, Yitzhak; Medova, Michaela
errShare
errSave
M. tuberculosis relies on trace oxygen to maintain energy homeostasis and survive in hypoxic environments
err2023-05-01
err10
errOAAI
errKalia, Nitin Pal; Singh, Samsher; Hards, Kiel; Cheung, Chen-Yi; Sviriaeva, Ekaterina; Banaei-Esfahani, Amir; Aebersold, Ruedi; Berney, Michael; Cook, Gregory M.; Pethe, Kevin
errShare
errSave
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems
err2023-04-14
err10
errOAAI
errBludau, Isabell; Nicod, Charlotte; Martelli, Claudia; Xue, Peng; Heusel, Moritz; Fossati, Andrea; Uliana, Federico; Frommelt, Fabian; Aebersold, Ruedi; Collins, Ben C.
errShare
errSave