arrow
Back
A

Andrew Rambaut

University of Edinburgh

150H-index
521Paper Count
15.2WCitation Count
Published Papers 167
Publication Date
Emergence of a Bundibugyo virus variant in the 2026 outbreak in the Democratic Republic of the Congo and Uganda
err2026-08-10
err0
errOAAI
errAdrienne Amuri-Aziza; Gradi Luakanda-Ndelemo; Alisen Ayitewala; Daan Jansen; Pascal Adroba-Tandele; Andrew Tebba; Eddy Kinganda-Lusamaki; Stephen Kanyerezi; Pontiano Kaleebu; Christian Ngandu; Allan Muruta; Daudi Jjingo; Susan Nabadda; Raphael Lumembe-Numbi; Olga Ntumba-Tshitenge; Misaki Wayengera; Ibrahimm Mugerwa; John O. Otshudiema; Judith Kyokushaba; Daniel J. Kyabayinze; Prince Akil-Bandali; Henry Kyobe Bosa; Daniel Mukadi-Bamuleka; Charles Olaro; Princesse Paku-Tshambu; Ahidjo Ayouba; Sabue Mulangu; Aloysious Ssemaganda; Nick Loman; Anne W. Rimoin; Atek Kagiria; Samuel Wilkinson; Benard Lubwama; Kevin K. Ariën; Steve Ahuka-Mundeke; Áine O’Toole; Dieudonné Mwamba; Christian Happi; Martine Peeters; Laurens Liesenborghs; Piet Maes; Miles W. Carroll; Jason Kindrachuk; Pierre Akilimali; Andrew Rambaut; Koen Vercauteren; Jean-Jacques Muyembe-Tamfum; Tony Wawina-Bokalanga; Isaac Ssewanyana; Placide Mbala-Kingebeni
errShare
errSave
Global approaches to infectious disease surveillance and modeling
err2026-05-20
err0
PREAI
errMark P. Khurana; Joseph L.-H. Tsui; Bernardo Gutierrez; Ayush Chopra; Neil Scheidwasser; Harrison Bo Hua Zhu; Serina Y. Chang; David A. Duchêne; Cathal Mills; Rhys P. D. Inward; Benjamin Reddy; John Brittain; Abhishek Dasgupta; James Sheldon; George Githinji; John S. Brownstein; Mélodie Monod; Luca Ferretti; Sivan Bershan; Simon Tietze; Leo Ferres; Silvia Argimón; Timothy J. Dallman; Etien Koua; Oliver Ratmann; Simon Cauchemez; Lauren A. Meyers; Lili Su; Alessandro Vespignani; Paul Pronyk; Áine O’Toole; Andrew Rambaut; Nicholas J. Loman; Edward C. Holmes; Seth Flaxman; Nicola Mulder; Oliver W. Morgan; Houriiyah Tegally; Manuel Gomez-Rodriguez; Nigel Shadbolt; Christian Happi; Meera Chand; Sofonias K. Tessema; Placide Mbala-Kingebeni; Marc A. Suchard; Oliver G. Pybus; Samuel V. Scarpino; Samir Bhatt; Moritz U. G. Kraemer
errShare
errSave
Genomic epidemiology of the 2025 mpox epidemic in Sierra Leone
err2026-05-12
err0
errOAAI
errAllan K. O. Campbell; John Demby Sandi; Ifeanyi F. Omah; Martin Faye; Edyth Parker; Taylor Brock-Fisher; Crystal M. Gigante; Vidalyn Folorunso; Mohamed Saio Kamara; Anu Jegede Williams; Mouhamed Kane; Tiangay Mariama Patience Sallay Kallon; Julian Campbell; Kadiatu Salmata Sesay; Sia Mani; Choe Miller; Naomi Daniel Sesay; Francis Baimba; Mignane Ndiaye; Roberta Lansana; Ibrahim Umaru Fofanah; Simon Ruhweza; Zein Souma; Amanda Kargbo; Komba Koninga; Alie Tia; Jone Ngobeh; Foday Thoronka; Alusine Fofanah; Al Ozonoff; Colby Wilkason; Danny Park; Christopher Tomkins-Tinch; Marietou F. Paye; Christopher Shin; Ian Baudi; Brendan Blumenstiel; Patrick Varilly; Ivan Specht; Ben Fry; Karlie Zhao; Paul Cronan; Ellory Laning; Oludayo Oluwaseyi Ope-ewe; Ayotunde Elijah Sijuwola; Femi Saibu; Harouna Soumare; Ebenezer Kehinde Ogundana; Ruth Oluwaseun Obaado; Jolly Amoche Adole; Imonikhe Kennedy Kio; Folefac Agnes Njeandoh; Alexandra Tuttle; Walter O. Oguta; Jonathan Greene; Aminata Koroma; Joseph Kanu; Mamadou Aliou Barry; Aboubacry Gaye; Andy Mahine Diouf; Christine Hughes; Joshua I. Levy; Alhaji N’jai; Moussa Moise Diagne; Dolo Nosamiefan; George Ameh; John Klena; Monique A. Foster; Abebaw Kebede; Collins Tanui; Boubacar Diallo; Anise Happi; Sofonias Tessema; Abdourahmane Sow; Yenew Kebede; Isatta Wurie; James Squire; Doris Harding; Zikan Koroma; Mohamed Boie Jalloh; Amadou Alpha Sall; Kristian G. Andersen; Andrew Rambaut; Mohamed Alex Vandi; Ibrahima Socé Fall; Pardis Sabeti; Christian Happi; Foday Sahr; Donald S. Grant
errShare
errSave
Deciphering the etiology of the 2024 outbreak of undiagnosed febrile illness in Panzi, Democratic Republic of the Congo
err2026-02-18
err0
errOAAI
errTony Wawina-Bokalanga; Jean-Claude Makangara-Cigolo; Rilia Ola-Mpumbe; Emmanuel Lokilo; François Mwakisenda-Tshakotsho; Mbonga Delphine; Immaculée Kahindo; Alphonse Tshonaka-Nkololo; Emmanuel Hasivirwe Vakaniaki; Nicholas Loman; Sarah Houben; Raphael Lumembe-Numbi; Eddy Kinganda-Lusamaki; Ange Ponga-Museme; Yero Mukota-Nungu; Anuj Kumar; Matondo Meris; Sam Wilkinson; Raquel Colquhoun; Kelly-Michel Kenye; Prince Akil-Bandali; Adrienne Amuri-Aziza; Gustavo Sganzerla Martinez; David J. Kelvin; Ronald Dijkman; Lisa E. Hensley; Cris Kasita; Franck Kafua-Wemba; Dieudonné Mwamba; Lorenzo Subissi; Nicole A. Hoff; Martine Peeters; Anne W. Rimoin; John L. Mokili; Octavie Lunguya-Metila; Edith Nkwembe; Andrew Rambaut; Laurens Liesenborghs; Nicola Low; Jason Kindrachuk; Koen Vercauteren; Robert Edwards; Jenna N. Kelly; Placide Mbala-Kingebeni; Steve Ahuka-Mundeke; Dieudonné Mumba; Jean-Jacques Muyembe-Tamfum
errShare
errSave
Mpox Clade IIb Virus Introduction into Kinshasa, Democratic Republic of the Congo, July 2025
errViruses
IF3.5
err2026-01-31
err0
errOAAI
errTony Wawina-Bokalanga; Eddy Kinganda-Lusamaki; Christian Ngandu; Prince Akil-Bandali; Jérémie Kundey-Mafu; Nadege Ngombe; Laurens Liesenborghs; Princesse Paku-Tshambu; Lorenzo Subissi; Pauline-Chloé Muswamba-Kayembe; Samy Tessi-Mvutukulu; Jacques Santini-Mafuta; Gradi Luakanda-Ndelemo; Olga Ntumba-Tshitenge; Mory Keita; Israel Cinkobu-Bualukengu; Emmanuel Lokilo-Lofiko; Fiston Cikaya-Kankolongo; Sikoti Josaphat; Cris Kacita; Adelar Lofungola; Judith Tete-Sitra; Raphael Lumembe-Numbi; Elzedek Mabika-Bope; Adrienne Amuri-Aziza; Daan Jansen; Jean-Claude Makangara-Cigolo; Jeanine Nkakulu; Yap Boum; Ngashi Ngongo; Sofonias Tessema; Nick Loman; Áine O’Toole; Anne W. Rimoin; Pierre Akilimali; Nicole A. Hoff; Jason Kindrachuk; Steve Ahuka-Mundeke; Martine Peeters; Dieudonné Mwamba; Koen Vercauteren; Andrew Rambaut; Jean-Jacques Muyembe-Tamfum; Placide Mbala-Kingebeni
errShare
errSave
Human outbreak detection and best practice MPXV analysis and interpretation with squirrel
err2026-01-01
err0
errOAAI
errO'Toole, Aine; Kinganda-Lusamaki, Eddy; Colquhoun, Rachel; Chato, Connor; Scher, Emily; Kent, Chris; Wilkinson, Sam; Quick, Joshua; Loman, Nicholas; Duggan, Ana T.; Mbala, Placide; Rambaut, Andrew
errShare
errSave
First imported cases of MPXV Clade Ib from Goma, Democratic Republic of the Congo
err2025-11-15
err0
errOAAI
errDaniel Mukadi-Bamuleka; Eddy Kinganda-Lusamaki; Noella Mulopo-Mukanya; Adrienne Amuri-Aziza; Áine O’Toole; Sydney Merritt; Brigitte Modadra-Madakpa; Guy Mutombo-Ndongala; Emmanuel Hasivirwe Vakaniaki; Cris Kacita; Gaston Lubambo Maboko; Jean-Claude Makangara-Cigolo; Michel Ngimba; Emmanuel Lokilo-Lofiko; Elisabeth Pukuta-Simbu; Gradi Luakanda-Ndelemo; Tavia Bodisa-Matamu; Zephanie Paluku-Kalimuli; Prince Akil-Bandali; Sifa Kavira-Bapitani; Daan Jansen; Adèle Kavira-Kamaliro; Emile Muhindo-Milonde; Jeriel Mufungizi; Yves Birindwa-Hamisi; Hugo Kavunga; Olivier Tshiani; Sabin Sabiti Nundu; Laurens Liesenborghs; Nicole A. Hoff; Megan Halbrook; Robert Shongo; Ahidjo Ayouba; Genay Pilarowski; Alain Kakule Mangolopa; Amos Kiuka Ebondo; Nicola Low; Souradet Y. Shaw; Sam Wilkinson; Sofonias Kifle Tessema; Lorenzo Subissi; Eric Delaporte; Koen Vercauteren; Tony Wawina-Bokalanga; Anne W. Rimoin; Lisa E. Hensley; Martine Peeters; Nicholas Loman; Andrew Rambaut; Jean-Jacques Muyembe-Tamfum; Jason Kindrachuk; Placide Mbala-Kingebeni; Steve Ahuka-Mundeke
errShare
errSave
HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X
err2025-10-01
err2
errOAAI
errBaele, Guy; Carvalho, Luiz M.; Brusselmans, Marius; Dudas, Gytis; Ji, Xiang; McCrone, John T.; Lemey, Philippe; Suchard, Marc A.; Rambaut, Andrew
errShare
errSave
Genomic epidemiology of clade Ia monkeypox viruses circulating in the Central African Republic in 2022–24: a retrospective cross-sectional study
err2025-09-04
err0
errOAAI
errChristian Noël Malaka; Livia Victoria Patrono; Thais Berenger Tombolomako; Ella Farra; Ornella Sibiro; Sandra Garba-Ouangolé; Benjamin Selekon; Cyprien Gildas Lemon; Festus Mbrenga; Aboubacar Soumah; Jenny Lorke; Ariane Düx; Julien Honorat Semdouto; Frédéric Stéphane Singa Niatou; Jephté Kaleb Kandou; Mbaïlao Raphaël; Jean Méthode Moyen; Ernest Kalthan; Edith Sako; Aubin Ngbeadego-Soukoudoupou; Odilon Auguste Kpahina; Philippe Lemey; Áine O’Toole; Andrew Rambaut; Pierre Somse; Sébastien Calvignac-Spencer; Emmanuel Nakoune; Fabian Hubertus Leendertz; Yap Boum
errShare
errSave
A systematic nomenclature for mpox viruses causing outbreaks with sustained human-to-human transmission
err2025-07-29
err0
PREAI
errChristopher Ruis; Eddy Lusamaki; Aine O’Toole; James R. Otieno; Rachel Colquhoun; Cornelius Roemer; Tony Wawina-Bokalanga; Olivier Tshiani-Mbaya; Daan Jansen; Jean-Claude Makangara; Anurag Agrawal; Laith Jamal Abu-Raddad; Steve Ahuka-Mundeke; Ahidjo Ayouba; Esam I. Azhar; Leon Caly; Christian Drosten; Nuno R. Faria; Adeola Fowotade; Ana Hoxha; Baoying Huang; Bette Korber; Olivier le Polain de Waroux; Rosamund F. Lewis; Laurens Liesenborghs; Nada M. Melhem; Vincent J. Munster; Dimie Ogoina; Bas B. Oude Munnink; Joseph Sriyal Malik Peiris; Gustavo Palacios; Martine Peeters; Paola Resende; Anne W. Rimoin; Senjuti Saha; Yee-Sin Leo; Tadaki Suzuki; Koen Vercauteren; Pragya Yadav; Maria D. Van Kerkhove; Richard Neher; Tulio de Oliveira; David Ulaeto; Placide Mbala-Kingebeni; Jason Kindrachuk; Marion P. G. Koopmans; Meera Chand; Anne von Gottberg; Lorenzo Subissi; Andrew Rambaut
errShare
errSave
BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference
err2025-07-07
err0
errOAAI
errGuy Baele; Xiang Ji; Gabriel W. Hassler; John T. McCrone; Yucai Shao; Zhenyu Zhang; Andrew J. Holbrook; Philippe Lemey; Alexei J. Drummond; Andrew Rambaut; Marc A. Suchard
errShare
errSave
Clade Ia Monkeypox Virus Linked to Sexual Transmission, Democratic Republic of the Congo, August 2024
err2025-05-01
err0
PREAI
errMakangara-Cigolo, Jean-Claude; Kenye, Kelly-Michel; Lunyanga, Lygie; Jansen, Daan; Kinganda-Lusamaki, Eddy; Kavira, Sifa; Amuri-Aziza, Adrienne; Malembi, Emile; Anta, Yvon; Akil-Bandali, Prince; Lokilo-Lofiko, Emmanuel; Vakaniaki, Emmanuel Hasivirwe; Nundu, Sabin Sabiti; Pukuta-Simbu, Elisabeth; Paku-Tshambu, Princesse; Ola-Mpumbe, Rilia; Lumembe-Numbi, Raphael; Kabamba-Lungenyi, Gabriel; Luakanda, Gradi; Kacita, Cris; Shongo-Lushima, Robert; Mwamba, Dieudonne; O'Toole, Aine; Merritt, Sydney; Halbrook, Megan; Mukadi-Bamuleka, Daniel; Hoff, Nicole A.; Low, Nicola; Bogoch, Isaac; Cevik, Muge; Gonsalves, Gregg; Shaw, Souradet; Subissi, Lorenzo; Liesenborghs, Laurens; Ayouba, Ahidjo; Peeters, Martine; Delaporte, Eric; Tessema, Sofonias; Rimoin, Anne W.; Muyembe-Tamfum, Jean-Jacques; Rambaut, Andrew; Vercauteren, Koen; Ahuka-Mundeke, Steve; Kindrachuk, Jason; Wawina-Bokalanga, Tony
errShare
errSave
Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived
err2025-02-22
err0
errOAAI
errPekar, Jonathan E.; Moshiri, Niema; Lemey, Philippe; Crits-Christoph, Alexander; Debarre, Florence; Goldstein, Stephen A.; Hensel, Zach; Rambaut, Andrew; Worobey, Michael; Holmes, Edward C.; Wertheim, Joel O.
errShare
errSave
Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation
err2024-12-17
err0
errOAAI
errParino, Francesco; Gustani-Buss, Emanuele; Bedford, Trevor; Suchard, Marc A.; Trovao, Nidia S.; Rambaut, Andrew; Colizza, Vittoria; Poletto, Chiara; Lemey, Philippe
errShare
errSave
Genomic epidemiology of early SARS-CoV-2 transmission dynamics in Bangladesh
err2024-11-13
err0
errOAAI
errCarnegie, L.; Mccrone, J. T.; du Plessis, L.; Hasan, M.; Ali, M. Z.; Begum, R.; Hassan, M. Z.; Islam, S.; Rahman, M. H.; Uddin, A. S. M.; Sarker, M. S.; Das, T.; Hossain, M.; Khan, M.; Razu, M. H.; Akram, A.; Arina, S.; Hoque, E.; Molla, M. M. A.; Nafisaa, T.; Angra, P.; Rambaut, A.; Pullan, S. T.; Osman, K. L.; Hoque, M. A.; Biswas, P.; Flora, M. S.; Raghwani, J.; Fournie, G.; Samad, M. A.; Hill, S. C.
errShare
errSave
A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK
err2024-10-17
err0
errOAAI
errColquhoun, Rachel; O'Toole, Aine; Hill, Verity; Mccrone, J. T.; Yu, Xiaoyu; Nicholls, Samuel M.; Poplawski, Radoslaw; Whalley, Thomas; Groves, Natalie; Ellaby, Nicholas; Loman, Nick; Connor, Tom; Rambaut, Andrew
errShare
errSave
On the importance of assessing topological convergence in Bayesian phylogenetic inference
err2024-10-15
err0
errOAAI
errBrusselmans, Marius; Carvalho, Luiz Max; L. Hong, Samuel; Gao, Jiansi; Matsen, Frederick A.; Rambaut, Andrew; Lemey, Philippe; Suchard, Marc A.; Dudas, Gytis; Baele, Guy
errShare
errSave
Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature
err2024-10-10
err1
errOAAI
errHoltz, Andrew; Van Weyenbergh, Johan; Hong, Samuel L.; Cuypers, Lize; O'Toole, Aine; Dudas, Gytis; Gerdol, Marco; Potter, Barney I.; Ntoumi, Francine; Mapanguy, Claujens Chastel Mfoutou; Vanmechelen, Bert; Wawina-Bokalanga, Tony; Van Holm, Bram; Menezes, Soraya Maria; Soubotko, Katja; Van Pottelbergh, Gijs; Wollants, Elke; Vermeersch, Pieter; Jacob, Ann-Sophie; Maes, Brigitte; Obbels, Dagmar; Matheeussen, Veerle; Martens, Geert; Gras, Jeremie; Verhasselt, Bruno; Laffut, Wim; Vael, Carl; Goegebuer, Truus; van der Kant, Rob; Rousseau, Frederic; Schymkowitz, Joost; Serrano, Luis; Delgado, Javier; Wenseleers, Tom; Bours, Vincent; Andre, Emmanuel; Suchard, Marc A.; Rambaut, Andrew; Dellicour, Simon; Maes, Piet; Durkin, Keith; Baele, Guy
errShare
errSave
Co-circulation of monkeypox virus subclades Ia and Ib in Kinshasa Province, Democratic Republic of the Congo, July to August 2024
err2024-09-19
err0
errOAAI
errWawina-Bokalanga, Tony; Akil-Bandali, Prince; Kinganda-Lusamaki, Eddy; Lokilo, Emmanuel; Jansen, Daan; Amuri-Aziza, Adrienne; Makangara-Cigolo, Jean-Claude; Pukuta-Simbu, Elisabeth; Ola-Mpumbe, Rilia; Muyembe, Mamito; Kacita, Cris; Paku-Tshambu, Princesse; Dantas, Pedro H. L. F.; Tshiani-Mbaya, Olivier; Luakanda, Gradi; Nkuba-Ndaye, Antoine; Matondo, Meris; Vakaniaki, Emmanuel Hasivirwe; Tessema, Sofonias; Ndembi, Nicaise; O'Toolesss, Aine; De Block, Tessa; Ngandu, Christian; Hoff, Nicole A.; Low, Nicola; Subissi, Lorenzo; Merritt, Sydney; Muyembe-Tamfum, Jean-Jacques; Liesenborghs, Laurens; Peeters, Martine; Delaporte, Eric; Kindrachuk, Jason; Rimoin, Anne; Ahuka-Mundeke, Steve; Rambau, Andrew; Mwamba, Dieudonne; Vercauteren, Koen; Mbala-Kingebeni, Placide
errShare
errSave
Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study
err2024-08-24
err0
errOAAI
errKim, Seungwon; Kigozi, Godfrey; Martin, Michael A.; Galiwango, Ronald M.; Quinn, Thomas C.; Redd, Andrew D.; Ssekubugu, Robert; Bonsall, David; Ssemwanga, Deogratius; Rambaut, Andrew; Herbeck, Joshua T.; Reynolds, Steven J.; Foley, Brian; Abeler-Dorner, Lucie; Fraser, Christophe; Ratmann, Oliver; Kagaayi, Joseph; Laeyendecker, Oliver; Grabowski, Mary K.
errShare
errSave