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Fatemeh Zare‐Mirakabad

computational biology research center

10H-index
62Paper Count
295Citation Count
Published Papers 7
Publication Date
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Which chemical features are captured by ChemBERTa’s attention?
errJournal of Computer-Aided Molecular Design
IF3.1
err2026-08-07
err0
PREAI
errSeyed Hassan Alavi; Fatameh Zare-Mirakabad; Sajjad Gharaghani
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SynergyGraph: predicting cell line specific drug combination synergy scores using knowledge graph representation and hypergraph modeling
errScientific Reports
IF3.9
err2025-12-24
err0
errOAAI
errMaryam Mehrabani; Amir Lakizadeh; Alireza Fotuhi Siahpirani; Mahdieh Salimi; Fatemeh Zare-Mirakabad; Ali Masoudi-Nejad
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errSave
PHLA-SiNet: A novel peptide-HLA binding prediction model using heterogeneous Siamese neural networks
errComputers in Biology and Medicine
IF6.3
err2025-09-01
err0
PREAI
errMaryam Nazarloo; Mahsa Saadat; Fatemeh Zare-Mirakabad
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Exploring ceRNA networks for key biomarkers in breast cancer subtypes and immune regulation
errSCIENTIFIC REPORTS
IF3.9
err2023-11-27
err3
errOAAI
errTaleghani, Alireza Shariatmadar; Beigi, Yasaman Zohrab; Zare-Mirakabad, Fatemeh; Masoudi-Nejad, Ali
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errSave
BioAct-Het: A Heterogeneous Siamese Neural Network for Bioactivity Prediction Using Novel Bioactivity Representation
errACS OMEGA
IF4.3
err2023-11-15
err2
errOAAI
errPaykan Heyrati, Mehdi; Ghorbanali, Zahra; Akbari, Mohammad; Pishgahi, Ghasem; Zare-Mirakabad, Fatemeh
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errSave
DrugRep-KG: Toward Learning a Unified Latent Space for Drug Repurposing Using Knowledge Graphs
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2023-04-06
err10
errOAAI
errGhorbanali, Zahra; Zare-Mirakabad, Fatemeh; Akbari, Mohammad; Salehi, Najmeh; Masoudi-Nejad, Ali
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EIA-CNDP: An exact iterative algorithm for critical node detection problem
errCOMPUTERS & OPERATIONS RESEARCH
IF4.3
err2021-03-01
err5
PREAI
errRezaei, Javad; Zare-Mirakabad, Fatemeh; MirHassani, Seyed Ali; Marashi, Sayed-Amir
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Research Directions

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Co-authors
Cooperation Journals
A
Ali Masoudi‐Nejad
H-index: 39 · Papers: 234
S
S.​A. MirHassani
H-index: 26 · Papers: 100
S
Sajjad Gharaghani
H-index: 24 · Papers: 121
S
Sayed‐Amir Marashi
H-index: 21 · Papers: 107
M
Mohammad Esmaeil Akbari
H-index: 19 · Papers: 153
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