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Ali Masoudi‐Nejad

department of bioinformatics

39H-index
234Paper Count
5.2KCitation Count
Published Papers 74
Publication Date
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SynergyGraph: predicting cell line specific drug combination synergy scores using knowledge graph representation and hypergraph modeling
errScientific Reports
IF3.9
err2025-12-24
err0
errOAAI
errMaryam Mehrabani; Amir Lakizadeh; Alireza Fotuhi Siahpirani; Mahdieh Salimi; Fatemeh Zare-Mirakabad; Ali Masoudi-Nejad
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SynergyImage: image-based model for drug combinations synergy score prediction
errBMC Bioinformatics
IF3.3
err2025-11-23
err0
errOAAI
errMaryam Mehrabani; Amir Lakizadeh; Alireza Fotuhi Siahpirani; Ali Masoudi-Nejad
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Bridging traditional and deep learning methods in H&E histological image normalization: a comprehensive review and introducing a novel framework for comparative analyses
errJournal of Advanced Research
IF13
err2025-10-13
err0
errOAAI
errBehnaz Haji Molla Hoseyni; Sevda Imany; Ahmadreza Iranpour; Maryam Mehrabani; Sina Seifouri; Maryam Rafieipour-Jobaneh; Sina Firuzbakht; Ali Masoudi-Nejad
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Heterogeneity and molecular landscape of melanoma: implications for targeted therapy
errMOLECULAR BIOMEDICINE
IF10.1
err2024-05-10
err6
errOAAI
errBeigi, Yasaman Zohrab; Lanjanian, Hossein; Fayazi, Reyhane; Salimi, Mahdieh; Hoseyni, Behnaz Haji Molla; Noroozizadeh, Mohammad Hafez; Masoudi-Nejad, Ali
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CFSSynergy: Combining Feature-Based and Similarity-Based Methods for Drug Synergy Prediction
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-03-22
err24
PREAI
errRafiei, Fatemeh; Zeraati, Hojjat; Abbasi, Karim; Razzaghi, Parvin; Ghasemi, Jahan B.; Parsaeian, Mahboubeh; Masoudi-Nejad, Ali
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Deciphering the impact of microbial interactions on COPD exacerbation: An in-depth analysis of the lung microbiome
errHELIYON
IF3.6
err2024-02-01
err0
errOAAI
errTaherkhani, Hamidreza; KavianFar, Azadeh; Aminnezhad, Sargol; Lanjanian, Hossein; Ahmadi, Ali; Azimzadeh, Sadegh; Masoudi-Nejad, Ali
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Exploring ceRNA networks for key biomarkers in breast cancer subtypes and immune regulation
errSCIENTIFIC REPORTS
IF3.9
err2023-11-27
err3
errOAAI
errTaleghani, Alireza Shariatmadar; Beigi, Yasaman Zohrab; Zare-Mirakabad, Fatemeh; Masoudi-Nejad, Ali
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errSave
Food co-consumption network as a new approach to dietary pattern in non-alcoholic fatty liver disease
errSCIENTIFIC REPORTS
IF3.9
err2023-11-24
err2
errOAAI
errNaghizadeh, Mohammad Mehdi; Osati, Saeed; Homayounfar, Reza; Masoudi-Nejad, Ali
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errSave
A deep learning-based framework for predicting survival-associated groups in colon cancer by integrating multi-omics and clinical data
errHELIYON
IF3.6
err2023-07-01
err8
errOAAI
errSalimy, Siamak; Lanjanian, Hossein; Abbasi, Karim; Salimi, Mahdieh; Najafi, Ali; Tapak, Leili; Masoudi-Nejad, Ali
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errSave
DrugRep-KG: Toward Learning a Unified Latent Space for Drug Repurposing Using Knowledge Graphs
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2023-04-06
err10
errOAAI
errGhorbanali, Zahra; Zare-Mirakabad, Fatemeh; Akbari, Mohammad; Salehi, Najmeh; Masoudi-Nejad, Ali
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errSave
Drug repositioning in non-small cell lung cancer (NSCLC) using gene co-expression and drug-gene interaction networks analysis
errSCIENTIFIC REPORTS
IF3.9
err2022-06-08
err15
errOAAI
errMotieGhader, Habib; Tabrizi-Nezhadi, Parinaz; Paskeh, Mahshid Deldar Abad; Baradaran, Behzad; Mokhtarzadeh, Ahad; Hashemi, Mehrdad; Lanjanian, Hossein; Mehdi Jazayeri, Seyed; Maleki, Masoud; Khodadadi, Ehsan; Nematzadeh, Sajjad; Kiani, Farzad; Maghsoudloo, Mazaher; Masoudi-Nejad, Ali
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errSave
mRNA-miRNA bipartite networks reconstruction in different tissues of bladder cancer based on gene co-expression network analysis
errSCIENTIFIC REPORTS
IF3.9
err2022-04-07
err6
errOAAI
errAbedi, Zahra; MotieGhader, Habib; Hosseini, Sahar Sadat; Goharrizi, Mohammad Ali Sheikh Beig; Masoudi-Nejad, Ali
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Pan-cancer analysis of biological events on cell cycle instability in gastrointestinal cancers with integrative scoring method
errGENOMICS
IF3
err2022-01-01
err5
errOAAI
errMoravveji, Sayyed Sajjad; Khoshbakht, Samane; Mokhtari, Majid; Salimi, Mahdieh; Masoudi-Nejad, Ali
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errSave
High-throughput analysis of the interactions between viral proteins and host cell RNAs
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2021-08-01
err10
errOAAI
errLanjanian, Hossein; Nematzadeh, Sajjad; Hosseini, Shadi; Torkamanian-Afshar, Mahsa; Kiani, Farzad; Moazzam-Jazi, Maryam; Aydin, Nizamettin; Masoudi-Nejad, Ali
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errSave
Revealing transcriptional and post-transcriptional regulatory mechanisms of γ-glutamyl transferase and keratin isoforms as novel cooperative biomarkers in low-grade glioma and glioblastoma multiforme
errGENOMICS
IF3
err2021-07-01
err7
errOAAI
errMottaghitalab, Faezeh; Lanjanian, Hossein; Masoudi-Nejad, Ali
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errSave
DNA methylation association with stage progression of head and neck squamous cell carcinoma
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2021-07-01
err7
PREAI
errGhafarpour, Vahid; Khansari, Mohammad; Banaei-Moghaddam, Ali M.; Najafi, Ali; Masoudi-Nejad, Ali
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errSave
Nodes with the highest control power play an important role at the final level of cooperation in directed networks
errSCIENTIFIC REPORTS
IF3.9
err2021-07-01
err2
errOAAI
errEbrahimi, Ali; Yousefi, Marzieh; Shahbazi, Farhad; Goharrizi, Mohammad Ali Sheikh Beig; Masoudi-Nejad, Ali
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errSave
Structure-based drug repurposing against COVID-19 and emerging infectious diseases: methods, resources and discoveries
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2021-05-17
err11
errOAAI
errMasoudi-Sobhanzadeh, Yosef; Salemi, Aysan; Pourseif, Mohammad M.; Jafari, Behzad; Omidi, Yadollah; Masoudi-Nejad, Ali
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Deep Learning in Drug Target Interaction Prediction: Current and Future Perspectives
errCURRENT MEDICINAL CHEMISTRY
IF3.5
err2021-04-01
err67
PREAI
errAbbasi, Karim; Razzaghi, Parvin; Poso, Antti; Ghanbari-Ara, Saber; Masoudi-Nejad, Ali
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A machine learning method based on the genetic and world competitive contests algorithms for selecting genes or features in biological applications
errSCIENTIFIC REPORTS
IF3.9
err2021-02-08
err11
errOAAI
errMasoudi-Sobhanzadeh, Yosef; Motieghader, Habib; Omidi, Yadollah; Masoudi-Nejad, Ali
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errSave

Research Directions

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Co-authors
Cooperation Journals
M
Minoru Kanehisa
H-index: 89 · Papers: 396
S
Stephen J. Haggarty
H-index: 73 · Papers: 277
A
Ahad Mokhtarzadeh
H-index: 70 · Papers: 287
Y
Yadollah Omidi
H-index: 67 · Papers: 428
M
Marie‐Pierre Dubé
H-index: 62 · Papers: 589
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