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J

Jernej Ule

king's college london

76H-index
290Paper Count
2.6WCitation Count
Published Papers 121
Publication Date
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Short RNA chaperones promote aggregation-resistant TDP-43 conformers to mitigate neurodegeneration
errScience
IF45.8
err2026-05-07
err0
PREAI
errKatie E. Copley; Jocelyn C. Mauna; Helen L. Danielson; Qizan Chen; Busra Ozguney; Marilyn Ngo; Longxin Xie; Ashleigh Smirnov; Matt Davis; Leland Mayne; Miriam Linsenmeier; Jack D. Rubien; Cristian A. Bergmann; Bede Portz; Bo Lim Lee; Hana M. Odeh; Longsheng Lai; Yi-Wei Chang; Martina Hallegger; Jernej Ule; Piera Pasinelli; Yan Poon; Jeetain Mittal; Nicolas L. Fawzi; Ben E. Black; Christopher J. Donnelly; Brigid K. Jensen; James Shorter
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errSave
Meta-unstable mRNAs in activated CD8+ T cells are defined by interlinked AU-rich elements and m6A mRNA methylation
errNature Communications
IF15.7
err2026-01-22
err0
errOAAI
errPaulo A. Gameiro; Iosifina P. Foskolou; Yumna A. Butt; Aniek A. M. Martens; Klara Kuret Hodnik; Igor Ruiz de los Mozos; Nordin D. Zandhuis; Žan Hozjan; Veronica M. Kot; Rupert Faraway; Michiel Vermeulen; Monika C. Wolkers; Randall S. Johnson; Jernej Ule
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errSave
Integrative profiling of condensation-prone RNAs during early development
errCell Genomics
IF9
err2025-11-19
err0
errOAAI
errTajda Klobučar; Jona Novljan; Ira A. Iosub; Boštjan Kokot; Iztok Urbančič; D. Marc Jones; Anob M. Chakrabarti; Nicholas M. Luscombe; Jernej Ule; Miha Modic
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errSave
Collective homeostasis of condensation-prone proteins via their mRNAs
errNature
IF48.5
err2025-09-24
err0
errOAAI
errRupert Faraway; Neve Costello Heaven; Holly Digby; Klara Kuret Hodnik; Jure Rebselj; Oscar G. Wilkins; Anob M. Chakrabarti; Ira A. Iosub; Neža Vadnjal; Rhys Dore; Lea Knez; Stefan L. Ameres; Clemens Plaschka; Jernej Ule
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errSave
From computational models of the splicing code to regulatory mechanisms and therapeutic implications
errNATURE REVIEWS GENETICS
IF52
err2024-10-02
err0
PREAI
errCapitanchik, Charlotte; Wilkins, Oscar G.; Wagner, Nils; Gagneur, Julien; Ule, Jernej
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errSave
NEAT1 modulates the TIRR/53BP1 complex to maintain genome integrity
errNATURE COMMUNICATIONS
IF15.7
err2024-09-30
err0
errOAAI
errKilgas, Susan; Syed, Aleem; Toolan-Kerr, Patrick; Swift, Michelle L.; Roychoudhury, Shrabasti; Sarkar, Aniruddha; Wilkins, Sarah; Quigley, Mikayla; Poetsch, Anna R.; Botuyan, Maria Victoria; Cui, Gaofeng; Mer, Georges; Ule, Jernej; Drane, Pascal; Chowdhury, Dipanjan
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errSave
Poised PABP-RNA hubs implement signal-dependent mRNA decay in development
errNATURE STRUCTURAL & MOLECULAR BIOLOGY
IF10.1
err2024-07-25
err0
errOAAI
errModic, Miha; Kuret, Klara; Steinhauser, Sebastian; Faraway, Rupert; van Genderen, Emiel; de los Mozos, Igor Ruiz; Novljan, Jona; Vicic, Ziga; Lee, Flora C. Y.; ten Berge, Derk; Luscombe, Nicholas M.; Ule, Jernej
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errSave
The impact of IDR phosphorylation on the RNA binding profiles of proteins
errTRENDS IN GENETICS
IF16.3
err2024-07-01
err5
PREAI
errModic, Miha; Adamek, Maksimiljan; Ule, Jernej
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errSave
Interrogation of RNA-protein interaction dynamics in bacterial growth
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2024-03-26
err0
errOAAI
errMonti, Mie; Herman, Reyme; Mancini, Leonardo; Capitanchik, Charlotte; Davey, Karen; Dawson, Charlotte S.; Ule, Jernej; Thomas, Gavin H.; Willis, Anne E.; Lilley, Kathryn S.; Villanueva, Eneko
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errSave
Mis-spliced transcripts generate de novo proteins in TDP-43-related ALS/FTD
errSCIENCE TRANSLATIONAL MEDICINE
IF14.6
err2024-02-14
err20
errOAAI
errSeddighi, Sahba; Qi, Yue A.; Brown, Anna-Leigh; Wilkins, Oscar G.; Bereda, Colleen; Belair, Cedric; Zhang, Yong-Jie; Prudencio, Mercedes; Keuss, Matthew J.; Khandeshi, Aditya; Pickles, Sarah; Kargbo-Hill, Sarah E.; Hawrot, James; Ramos, Daniel M.; Yuan, Hebao; Roberts, Jessica; Sacramento, Erika Kelmer; Shah, Syed I.; Nalls, Mike A.; Colon-Mercado, Jennifer M.; Reyes, Joel F.; Ryan, Veronica H.; Nelson, Matthew P.; Cook, Casey N.; Li, Ziyi; Screven, Laurel; Kwan, Justin Y.; Mehta, Puja R.; Zanovello, Matteo; Hallegger, Martina; Shantaraman, Anantharaman; Ping, Lingyan; Koike, Yuka; Oskarsson, Bjorn; Staff, Nathan P.; Duong, Duc M.; Ahmed, Aisha; Secrier, Maria; Ule, Jernej; Jacobson, Steven; Reich, Daniel S.; Rohrer, Jonathan D.; Malaspina, Andrea; Dickson, Dennis W.; Glass, Jonathan D.; Ori, Alessandro; Seyfried, Nicholas T.; Maragkakis, Manolis; Petrucelli, Leonard; Fratta, Pietro; Ward, Michael E.
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errSave
Subcytoplasmic location of translation controls protein output
errMOLECULAR CELL
IF16.6
err2023-12-01
err13
errOAAI
errHorste, Ellen L.; Fansler, Mervin M.; Cai, Ting; Chen, Xiuzhen; Mitschka, Sibylle; Zhen, Gang; Lee, Flora C. Y.; Ule, Jernej; Mayr, Christine
errShare
errSave
Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning
errGENOME BIOLOGY
IF9.4
err2023-08-04
err9
errOAAI
errHorlacher, Marc; Wagner, Nils; Moyon, Lambert; Kuret, Klara; Goedert, Nicolas; Salvatore, Marco; Ule, Jernej; Gagneur, Julien; Winther, Ole; Marsico, Annalisa
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errSave
Control of protein synthesis through mRNA pseudouridylation by dyskerin
errSCIENCE ADVANCES
IF12.5
err2023-07-28
err9
errOAAI
errPederiva, Chiara; Trevisan, Davide M.; Peirasmaki, Dimitra; Chen, Shan; Savage, Sharon A.; Larsson, Ola; Ule, Jernej; Baranello, Laura; Agostini, Federico; Farnebo, Marianne
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errSave
ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins
errNATURE COMMUNICATIONS
IF15.7
err2023-07-24
err6
errOAAI
errMas, Aina Maria; Goni, Enrique; de los Mozos, Igor Ruiz; Arcas, Aida; Statello, Luisa; Gonzalez, Jovanna; Blazquez, Lorea; Lee, Wei Ting Chelsea; Gupta, Dipika; Sejas, Alvaro; Hoshina, Shoko; Armaos, Alexandros; Tartaglia, Gian Gaetano; Waga, Shou; Ule, Jernej; Rothenberg, Eli; Gomez, Maria; Huarte, Maite
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errSave
Transcriptome-wide RNA binding analysis of C9orf72 poly(PR) dipeptides
errLIFE SCIENCE ALLIANCE
IF2.9
err2023-07-12
err6
errOAAI
errBalendra, Rubika; de los Mozos, Igor Ruiz; Odeh, Hana M.; Glaria, Idoia; Milioto, Carmelo; Wilson, Katherine M.; Ule, Agnieszka M.; Hallegger, Martina; Masino, Laura; Martin, Stephen; Patani, Rickie; Shorter, James; Ule, Jernej; Isaacs, Adrian M.
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The paralogues MAGOH and MAGOHB are oncogenic factors in high-grade gliomas and safeguard the splicing of cell division and cell cycle genes
errRNA BIOLOGY
IF3.4
err2023-06-09
err3
errOAAI
errBarreiro, Rodrigo A. S.; Guardia, Gabriela D. A.; Meliso, Fabiana M.; Lei, Xiufen; Li, Wei-Qing; Savio, Andre; Fellermeyer, Martin; Conceicao, Helena B.; Mercuri, Rafael L. V.; Landry, Tesha; Qiao, Mei; Blazquez, Lorea; Ule, Jernej; Penalva, Luiz O. F.; Galante, Pedro A. F.
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errSave
HNRNPH1 regulates the neuroprotective cold-shock protein RBM3 expression through poison exon exclusion
errEMBO JOURNAL
IF8.3
err2023-05-30
err7
errOAAI
errLin, Julie Qiaojin; Khuperkar, Deepak; Pavlou, Sofia; Makarchuk, Stanislaw; Patikas, Nikolaos; Lee, Flora C. Y.; Zbiegly, Julia M.; Kang, Jianning; Field, Sarah F.; Bailey, David M. D.; Freeman, Joshua L.; Ule, Jernej; Metzakopian, Emmanouil; Ruepp, Marc-David; Mallucci, Giovanna R.
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An ERK1/2-driven RNA-binding switch in nucleolin drives ribosome biogenesis and pancreatic tumorigenesis downstream of RAS oncogene
errEMBO JOURNAL
IF8.3
err2023-04-11
err8
errOAAI
errAzman, Muhammad S.; Alard, Emilie L.; Dodel, Martin; Capraro, Federica; Faraway, Rupert; Dermit, Maria; Fan, Wanling; Chakraborty, Alina; Ule, Jernej; Mardakheh, Faraz K.
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errSave
A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3′ UTR structure to RNA metabolism
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-04-04
err4
errOAAI
errChakrabarti, Anob M.; Iosub, Ira A.; Lee, Flora C. Y.; Ule, Jernej; Luscombe, Nicholas M.
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errSave
Looping in on splicing CRIC-seq uncovers PTBP1's long-range RNA regulatory rules
errMOLECULAR CELL
IF16.6
err2023-04-01
err0
errOAAI
errIosub, Ira Alexandra; Klobuc, Tajda; Ule, Jernej
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Dennis W. Dickson
H-index: 218 · Papers: 2.3K
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John Hardy
H-index: 207 · Papers: 1.9K
M
Mark Gerstein
H-index: 191 · Papers: 1.2K
M
Manel Esteller
H-index: 165 · Papers: 1.6K
D
Detlef Weigel
H-index: 163 · Papers: 944
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