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Hari Shroff

Howard Hughes Medical Institute

50H-index
215Paper Count
1.3WCitation Count
Published Papers 85
Publication Date
Efficient spatio-angular reconstruction enables high-fidelity mapping of six-dimensional structures and dynamics with polarized fluorescence microscopy
err2026-08-17
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errJunyu Liu; Talon Chandler; Yue Li; Atharva Agashe; Mingzhe Wei; Yijun Su; Yicong Wu; Tobias I. Baskin; Valentin Jaumouillé; Jiji Chen; Pengcheng Xu; Huihui Ye; Wentao Zhu; Robert S. Fischer; Vinay S. Swaminathan; Amrinder S. Nain; Shalin B. Mehta; Patrick J. La Riviere; Hari Shroff; Huafeng Liu; Min Guo
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Phase Diversity Wavefront Sensing for Adaptive Optics Light-Sheet Fluorescence Microscopy
err2026-01-01
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PREAI
errJohnson, Courtney; Schneider, Magdalena C.; Christensen, Ryan; Li, Xuesong; Guo, Min; La Riviere, Patrick; Shroff, Hari
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Single-molecule fluorescence microscopy reveals regulatory mechanisms of MYO7A-driven cargo transport in stereocilia of live inner ear hair cells
err2025-09-01
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errTakushi Miyoshi; Harshad D. Vishwasrao; Inna A. Belyantseva; Junko Miyoshi; Mrudhula Sajeevadathan; Yasuko Ishibashi; Samuel M. Adadey; Narinobu Harada; Hari Shroff; Thomas B. Friedman
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Volumetric imaging of the 3D orientation of cellular structures with a polarized fluorescence light-sheet microscope
err2025-02-21
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errChandler, Talon; Guo, Min; Su, Yijun; Chen, Jiji; Wu, Yicong; Liu, Junyu; Agashe, Atharva; Fischer, Robert S.; Mehta, Shalin B.; Kumar, Abhishek; Baskin, Tobias I.; Jaumouille, Valentin; Liu, Huafeng; Swaminathan, Vinay; Nain, Amrinder S.; Oldenbourg, Rudolf; La Riviere, Patrick J.; Shroff, Hari
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Altruistic feeding and cell-cell signaling during bacterial differentiation actively enhance phenotypic heterogeneity
err2024-10-18
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errUpdegrove, Taylor B.; Delerue, Thomas; Anantharaman, Vivek; Cho, Hyomoon; Chan, Carissa; Nipper, Thomas; Choo-Wosoba, Hyoyoung; Jenkins, Lisa M.; Zhang, Lixia; Su, Yijun; Shroff, Hari; Chen, Jiji; Bewley, Carole A.; Aravind, L.; Ramamurthi, Kumaran S.
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Convolutional neural network transformer (CNNT) for fluorescence microscopy image denoising with improved generalization and fast adaptation
err2024-08-06
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errRehman, Azaan; Zhovmer, Alexander; Sato, Ryo; Mukouyama, Yoh-suke; Chen, Jiji; Rissone, Alberto; Puertollano, Rosa; Liu, Jiamin; Vishwasrao, Harshad D.; Shroff, Hari; Combs, Christian A.; Xue, Hui
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Resolution in super-resolution microscopy - definition, trade-offs and perspectives
err2024-07-01
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PREAI
errPrakash, Kirti; Baddeley, David; Eggeling, Christian; Fiolka, Reto; Heintzmann, Rainer; Manley, Suliana; Radenovic, Aleksandra; Smith, Carlas; Shroff, Hari; Schermelleh, Lothar
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Phase-diversity-based wavefront sensing for fluorescence microscopy
errOPTICA
IF8.5
err2024-06-10
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errJohnson, Courtney; Guo, Min; Schneider, Magdalena c.; Su, Yijun; Khuon, Satya; Reiser, Nikolaj; Wu, Yicong; LA Riviere, Patrick; Shroff, Hari
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Cell division machinery drives cell- specific gene activation during differentiation in Bacillus subtilis
err2024-03-19
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errChareyre, Sylvia; Li, Xuesong; Anjuwon, Brandon R.; Updegrove, Taylor B.; Clifford, Sarah; Brogan, Anna P.; Su, Yijun; Zhang, Lixia; Chen, Jiji; Shroff, Hari; Ramamurthia, Kumaran S.
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Live-cell imaging powered by computation
err2024-02-20
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PREAI
errShroff, Hari; Testa, Ilaria; Jug, Florian; Manley, Suliana
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Label-free cleared tissue microscopy and machine learning for 3D histopathology of biomaterial implants
err2023-03-02
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errNgo, Tran B.; DeStefano, Sabrina; Liu, Jiamin; Su, Yijun; Shroff, Hari; Vishwasrao, Harshad D.; Sadtler, Kaitlyn
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Three-dimensional structured illumination microscopy with enhanced axial resolution
err2023-01-26
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errLi, Xuesong; Wu, Yicong; Su, Yijun; Rey-Suarez, Ivan; Matthaeus, Claudia; Updegrove, Taylor B. B.; Wei, Zhuang; Zhang, Lixia; Sasaki, Hideki; Li, Yue; Guo, Min; Giannini, John P. P.; Vishwasrao, Harshad D. D.; Chen, Jiji; Lee, Shih-Jong J.; Shao, Lin; Liu, Huafeng; Ramamurthi, Kumaran S. S.; Taraska, Justin W. W.; Upadhyaya, Arpita; La Riviere, Patrick; Shroff, Hari
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Incorporating the image formation process into deep learning improves network performance
err2022-10-31
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errLi, Yue; Su, Yijun; Guo, Min; Han, Xiaofei; Liu, Jiamin; Vishwasrao, Harshad D.; Li, Xuesong; Christensen, Ryan; Sengupta, Titas; Moyle, Mark W.; Rey-Suarez, Ivan; Chen, Jiji; Upadhyaya, Arpita; Usdin, Ted B.; Colon-Ramos, Daniel Alfonso; Liu, Huafeng; Wu, Yicong; Shroff, Hari
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Practical considerations for quantitative light sheet fluorescence microscopy
err2022-10-20
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PREAI
errHobson, Chad M.; Guo, Min; Vishwasrao, Harshad D.; Wu, Yicong; Shroff, Hari; Chew, Teng-Leong
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Nanotopography modulates cytoskeletal organization and dynamics during T cell activation
err2022-09-01
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errWheatley, Brittany A.; Rey-Suarez, Ivan; Hourwitz, Matt J.; Kerr, Sarah; Shroff, Hari; Fourkas, John T.; Upadhyaya, Arpita
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Stereotyped behavioral maturation and rhythmic quiescence in C. elegans embryos
err2022-08-05
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errArdiel, Evan L.; Lauziere, Andrew; Xu, Stephen; Harvey, Brandon J.; Christensen, Ryan Patrick; Nurrish, Stephen; Kaplan, Joshua M.; Shroff, Hari
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Plasticity in structure and assembly of SARS-CoV-2 nucleocapsid protein
err2022-05-16
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errZhao, Huaying; Ai Nguyen; Wu, Di; Li, Yan; Hassan, Sergio A.; Chen, Jiji; Shroff, Hari; Piszczek, Grzegorz; Schuck, Peter
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The HIV-1 Viral Protease Is Activated during Assembly and Budding Prior to Particle Release
err2022-05-11
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errTabler, Caroline O.; Wegman, Sarah J.; Chen, Jiji; Shroff, Hari; Alhusaini, Najwa; Tilton, John C.
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Cytonemes coordinate asymmetric signaling and organization in the Drosophila muscle progenitor niche
err2022-03-04
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errPatel, Akshay; Wu, Yicong; Han, Xiaofei; Su, Yijun; Maugel, Tim; Shroff, Hari; Roy, Sougata
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Actomyosin dynamics modulate microtubule deformation and growth during T-cell activation
err2021-08-19
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errRey-Suarez, Ivan; Rogers, Nate; Kerr, Sarah; Shroff, Hari; Upadhyaya, Arpita
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