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Alexander Stark

vienna biocenter

71H-index
187Paper Count
3.3WCitation Count
Published Papers 60
Publication Date
Predictive design of tissue-specific mammalian enhancers that function in the mouse embryo
err2026-08-25
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errOAAI
errShenzhi Chen; Vincent Loubiere; Ethan W. Hollingsworth; Ken Murakami; Nikolaus Mandlburger; Sandra H. Jacinto; Atrin Dizehchi; Jacob Schreiber; Evgeny Z. Kvon; Alexander Stark
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Enhancer cooperativity can compensate for loss of activity over large genomic distances
err2025-01-01
err5
errOAAI
errThomas, Henry F.; Feng, Songjie; Haslhofer, Felix; Huber, Marie; Gallardo, Maria Garcia; Loubiere, Vincent; Vanina, Daria; Pitasi, Mattia; Stark, Alexander; Buecker, Christa
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A genome-wide screen identifies silencers with distinct chromatin properties and mechanisms of repression
err2024-12-01
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errHofbauer, Lorena; Pleyer, Lisa-Marie; Reiter, Franziska; Schleiffer, Alexander; Vlasova, Anna; Serebreni, Leonid; Huang, Annie; Stark, Alexander
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Developmental and housekeeping transcriptional programs display distinct modes of enhancer-enhancer cooperativity in Drosophila
err2024-10-03
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errOAAI
errLoubiere, Vincent; de Almeida, Bernardo P.; Pagani, Michaela; Stark, Alexander
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Pleural Effusion and Invasive Hemodynamic Measurements in Advanced Heart Failure
err2024-09-01
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PREAI
errGlargaard, Signe; Deis, Tania; Abild-Nielsen, Annemette G.; Stark, Alexander; Thomsen, Jakob H.; Kristensen, Soren L.; Rossing, Kasper; Gustafsson, Finn; Thune, Jens Jakob
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Proteome-scale tagging and functional screening in mammalian cells by ORFtag
err2024-07-05
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errOAAI
errNemcko, Filip; Himmelsbach, Moritz; Loubiere, Vincent; Yelagandula, Ramesh; Pagani, Michaela; Fasching, Nina; Brennecke, Julius; Elling, Ulrich; Stark, Alexander; Ameres, Stefan L.
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Genomic surveillance of SARS-CoV-2 evolution by a centralised pipeline and weekly focused sequencing, Austria, January 2021 to March 2023
err2024-06-06
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errFrank, Olga; Balboa, David Acitores; Novatchkova, Maria; Oezkan, Ezgi; Strobl, Marcus Martin; Yelagandula, Ramesh; Albanese, Tanino Guiseppe; Endler, Lukas; Amman, Fabian; Felsenstein, Vera; Gavrilovic, Milanka; Acosta, Melanie; Patocka, Timothej; Vogt, Alexander; Tamir, Ido; Klikovits, Julia; Zoufaly, Alexander; Seitz, Tamara; Foedinger, Manuela; Bergthaler, Andreas; Indra, Alexander; Schmid, Daniela; Klimek, Peter; Stark, Alexander; Allerberger, Franz; Benka, Bernhard; Reich, Katharina; Cochella, Luisa; Elling, Ulrich
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An unbiased AAV-STARR-seq screen revealing the enhancer activity map of genomic regions in the mouse brain in vivo
err2023-04-25
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errOAAI
errChan, Ya-Chien; Kienle, Eike; Oti, Martin; Di Liddo, Antonella; Mendez-Lago, Maria; Aschauer, Dominik F.; Peter, Manuel; Pagani, Michaela; Arnold, Cosmas; Vonderheit, Andreas; Schoen, Christian; Kreuz, Sebastian; Stark, Alexander; Rumpel, Simon
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Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns
err2023-04-04
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errOAAI
errSerebreni, Leonid; Pleyer, Lisa-Marie; Haberle, Vanja; Hendy, Oliver; Vlasova, Anna; Loubiere, Vincent; Nemcko, Filip; Bergauer, Katharina; Roitinger, Elisabeth; Mechtler, Karl; Stark, Alexander
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Genome-wide analysis of mRNAs regulated by Drosha and Argonaute proteins in Drosophila melanogaster
err2023-03-27
err142
errOAAI
errRehwinkel, J; Natalin, P; Stark, A; Brennecke, J; Cohen, SM; Izaurralde, E
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Enhancers display constrained sequence flexibility and context-specific modulation of motif function
err2023-03-20
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errOAAI
errReiter, Franziska; de Almeida, Bernardo P.; Stark, Alexander
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Systematic identification and characterization of repressive domains in Drosophila transcription factors
err2022-12-22
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errKlaus, Loni; de Almeida, Bernardo P.; Vlasova, Anna; Nemcko, Filip; Schleiffer, Alexander; Bergauer, Katharina; Hofbauer, Lorena; Rath, Martina; Stark, Alexander
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Developmental and housekeeping transcriptional programs in Drosophila require distinct chromatin remodelers
err2022-10-01
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errOAAI
errHendy, Oliver; Serebreni, Leonid; Bergauer, Katharina; Muerdter, Felix; Huber, Lukas; Nemcko, Filip; Stark, Alexander
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DeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers
err2022-05-12
err105
errOAAI
errde Almeida, Bernardo P.; Reiter, Franziska; Pagani, Michaela; Stark, Alexander
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PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
err2021-10-19
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errAppel, Lisa-Marie; Franke, Vedran; Bruno, Melania; Grishkovskaya, Irina; Kasiliauskaite, Aiste; Kaufmann, Tanja; Schoeberl, Ursula E.; Puchinger, Martin G.; Kostrhon, Sebastian; Ebenwaldner, Carmen; Sebesta, Marek; Beltzung, Etienne; Mechtler, Karl; Lin, Gen; Vlasova, Anna; Leeb, Martin; Pavri, Rushad; Stark, Alexander; Akalin, Altuna; Stefl, Richard; Bernecky, Carrie; Djinovic-Carugo, Kristina; Slade, Dea
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Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq
err2021-05-25
err35
errOAAI
errYelagandula, Ramesh; Bykov, Aleksandr; Vogt, Alexander; Heinen, Robert; Oezkan, Ezgi; Strobl, Marcus Martin; Baar, Juliane Christina; Uzunova, Kristina; Hajdusits, Bence; Kordic, Darja; Suljic, Erna; Kurtovic-Kozaric, Amina; Izetbegovic, Sebija; Schaeffer, Justine; Hufnagl, Peter; Zoufaly, Alexander; Seitz, Tamara; Foedinger, Manuela; Allerberger, Franz; Stark, Alexander; Cochella, Luisa; Elling, Ulrich
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A high-throughput method to identify trans-activation domains within transcription factor sequences
err2018-07-13
err48
errOAAI
errArnold, Cosmas D.; Nemcko, Filip; Woodfin, Ashley R.; Wienerroither, Sebastian; Vlasova, Anna; Schleiffer, Alexander; Pagani, Michaela; Rath, Martina; Stark, Alexander
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