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A

Ana Pombo

Berlin Institute for Medical Systems Biology

51H-index
182Paper Count
1.4WCitation Count
Published Papers 69
Publication Date
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An integrated view of the structure and function of the human 4D nucleome
errNature
IF48.5
err2025-12-17
err0
errOAAI
errJob Dekker; Betul Akgol Oksuz; Yang Zhang; Ye Wang; Miriam K. Minsk; Shuzhen Kuang; Liyan Yang; Johan H. Gibcus; Nils Krietenstein; Oliver J. Rando; Jie Xu; Derek H. Janssens; Steven Henikoff; Alexander Kukalev; Willemin Andréa; Warren Winick-Ng; Rieke Kempfer; Ana Pombo; Miao Yu; Pradeep Kumar; Liguo Zhang; Andrew S. Belmont; Takayo Sasaki; Tom van Schaik; Laura Brueckner; Daan Peric-Hupkes; Bas van Steensel; Ping Wang; Haoxi Chai; Minji Kim; Yijun Ruan; Ran Zhang; Sofia A. Quinodoz; Prashant Bhat; Mitchell Guttman; Wenxin Zhao; Shu Chien; Yuan Liu; Sergey V. Venev; Dariusz Plewczynski; Ibai Irastorza Azcarate; Dominik Szabó; Christoph J. Thieme; Teresa Szczepińska; Mateusz Chiliński; Kaustav Sengupta; Mattia Conte; Andrea Esposito; Alex Abraham; Ruochi Zhang; Yuchuan Wang; Xingzhao Wen; Qiuyang Wu; Yang Yang; Jie Liu; Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Andrea Maria Chiariello; Simona Bianco; Lindsay Lee; Ming Hu; Yun Li; R. Jordan Barnett; Ashley L. Cook; Daniel J. Emerson; Claire Marchal; Peiyao Zhao; Peter J. Park; Burak H. Alver; Andrew J. Schroeder; Rahi Navelkar; Clara Bakker; William Ronchetti; Shannon Ehmsen; Alexander D. Veit; Nils Gehlenborg; Ting Wang; Daofeng Li; Xiaotao Wang; Mario Nicodemi; Bing Ren; Sheng Zhong; Jennifer E. Phillips-Cremins; David M. Gilbert; Katherine S. Pollard; Frank Alber; Jian Ma; William S. Noble; Feng Yue
errShare
errSave
Extensive folding variability between homologous chromosomes in mammalian cells
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2025-05-06
err0
errOAAI
errIrastorza-Azcarate, Ibai; Kukalev, Alexander; Kempfer, Rieke; Thieme, Christoph J.; Mastrobuoni, Guido; Markowski, Julia; Loof, Gesa; Sparks, Thomas M.; Brookes, Emily; Natarajan, Kedar Nath; Sauer, Stephan; Fisher, Amanda G.; Nicodemi, Mario; Ren, Bing; Schwarz, Roland F.; Kempa, Stefan; Pombo, Ana
errShare
errSave
Epigenetic regulatory layers in the 3D nucleus
errMOLECULAR CELL
IF16.6
err2024-02-01
err11
errOAAI
errWillemin, Andrea; Szabo, Dominik; Pombo, Ana
errShare
errSave
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C
errNATURE METHODS
IF32.1
err2023-06-19
err8
errOAAI
errBeagrie, Robert A. A.; Thieme, Christoph J. J.; Annunziatella, Carlo; Baugher, Catherine; Zhang, Yingnan; Schueler, Markus; Kukalev, Alexander; Kempfer, Rieke; Chiariello, Andrea M. M.; Bianco, Simona; Li, Yichao; Davis, Trenton; Scialdone, Antonio; Welch, Lonnie R. R.; Nicodemi, Mario; Pombo, Ana
errShare
errSave
Genome architecture mapping detects transcriptionally active, multiway chromatin contacts
errNATURE METHODS
IF32.1
err2023-06-19
err0
PREAI
errThieme, Christoph J.; Pombo, Ana
errShare
errSave
Mechanisms of enhancer function in neuronal systems in health and disease
errCURRENT OPINION IN SYSTEMS BIOLOGY
IF2.2
err2023-03-01
err1
PREAI
errZea-Redondo, Luna; Pombo, Ana
errShare
errSave
Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos
errCELL GENOMICS
IF9
err2022-01-01
err12
errOAAI
errMcgarvey, Alison C.; Kopp, Wolfgang; Vucicevic, Dubravka; Mattonet, Kenny; Kempfer, Rieke; Hirsekorn, Antje; Bilic, Ilija; Gil, Marine; Trinks, Alexandra; Merks, Anne Margarete; Panakova, Daniela; Pombo, Ana; Akalin, Altuna; Junker, Jan Philipp; Stainier, Didier Y. R.; Garfield, David; Ohler, Uwe; Lacadie, Scott Allen
errShare
errSave
Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin (vol 18, pg 482, 2021)
errNATURE METHODS
IF32.1
err2021-09-03
err1
errOAAI
errFiorillo, Luca; Musella, Francesco; Conte, Mattia; Kempfer, Rieke; Chiariello, Andrea M.; Bianco, Simona; Kukalev, Alexander; Irastorza-Azcarate, Ibai; Esposito, Andrea; Abraham, Alex; Prisco, Antonella; Pombo, Ana; Nicodemi, Mario
errShare
errSave
Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin
errNATURE METHODS
IF32.1
err2021-05-07
err36
errOAAI
errFiorillo, Luca; Musella, Francesco; Kempfer, Rieke; Chiariello, Andrea M.; Bianco, Simona; Kukalev, Alexander; Irastorza-Azcarate, Ibai; Esposito, Andrea; Conte, Mattia; Prisco, Antonella; Pombo, Ana; Nicodemi, Mario; Abraham, Alex
errShare
errSave
The dynamics of chromatin architecture in brain development and function
errCURRENT OPINION IN GENETICS & DEVELOPMENT
IF3.6
err2021-04-01
err23
errOAAI
errHarabula, Izabela; Pombo, Ana
errShare
errSave
Inference of chromosome 3D structures from GAM data by a physics computational approach
errMETHODS
IF4.3
err2020-10-01
err8
PREAI
errFiorillo, Luca; Bianco, Simona; Chiariello, Andrea M.; Barbieri, Mariano; Esposito, Andrea; Annunziatella, Carlo; Conte, Mattia; Corrado, Alfonso; Prisco, Antonella; Pombo, Ana; Nicodemi, Mario
errShare
errSave
Evolving methodologies and concepts in 4D nucleome research
errCURRENT OPINION IN CELL BIOLOGY
IF4.3
err2020-06-01
err9
errOAAI
errSparks, Thomas M.; Harabula, Izabela; Pombo, Ana
errShare
errSave
Methods for mapping 3D chromosome architecture
errNATURE REVIEWS GENETICS
IF52
err2019-12-17
err352
PREAI
errKempfer, Rieke; Pombo, Ana
errShare
errSave
Editorial overview: Genome architecture and expression
errCURRENT OPINION IN GENETICS & DEVELOPMENT
IF3.6
err2019-04-01
err3
PREAI
errBickmore, Wendy; Pombo, Ana
errShare
errSave
R-Loops Enhance Polycomb Repression at a Subset of Developmental Regulator Genes
errMOLECULAR CELL
IF16.6
err2019-03-01
err83
errOAAI
errSkourti-Stathaki, Konstantina; Triglia, Elena Torlai; Warburton, Marie; Voigt, Philipp; Bird, Adrian; Pombo, Ana
errShare
errSave
Challenges and guidelines toward 4D nucleome data and model standards
errNATURE GENETICS
IF31.8
err2018-09-27
err42
errOAAI
errMarti-Renom, Marc A.; Almouzni, Genevieve; Bickmore, Wendy A.; Bystricky, Kerstin; Cavalli, Giacomo; Fraser, Peter; Gasser, Susan M.; Giorgetti, Luca; Heard, Edith; Nicodemi, Mario; Nollmann, Marcelo; Orozco, Modesto; Pombo, Ana; Torres-Padilla, Maria-Elena
errShare
errSave
Polymer physics predicts the effects of structural variants on chromatin architecture
errNATURE GENETICS
IF31.8
err2018-04-16
err204
errOAAI
errBianco, Simona; Lupianez, Dario G.; Chiariello, Andrea M.; Annunziatella, Carlo; Kraft, Katerina; Schoepflin, Robert; Wittler, Lars; Andrey, Guillaume; Vingron, Martin; Pombo, Ana; Mundlos, Stefan; Nicodemi, Mario
errShare
errSave
RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2017-10-16
err35
errOAAI
errFerrai, Carmelo; Triglia, Elena Torlai; Risner-Janiczek, Jessica R.; Rito, Tiago; Rackham, Owen J. L.; de Santiago, Ines; Kukalev, Alexander; Nicodemi, Mario; Akalin, Altuna; Li, Meng; Ungless, Mark A.; Pombo, Ana
errShare
errSave
Continuous chromatin changes
errNATURE
IF48.5
err2017-07-06
err10
errOAAI
errBeagrie, Robert A.; Pombo, Ana
errShare
errSave
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
errNATURE COMMUNICATIONS
IF15.7
err2017-06-26
err58
errOAAI
errKar, Gozde; Kim, Jong Kyoung; Kolodziejczyk, Aleksandra A.; Natarajan, Kedar Nath; Triglia, Elena Torlai; Mifsud, Borbala; Elderkin, Sarah; Marioni, John C.; Pombo, Ana; Teichmann, Sarah A.
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
R
Richard A. Young
H-index: 158 · Papers: 702
P
Peter J. Park
H-index: 145 · Papers: 810
S
Sarah A. Teichmann
H-index: 141 · Papers: 677
S
Steven Henikoff
H-index: 141 · Papers: 677
S
Shu Chien
H-index: 133 · Papers: 870
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