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Rapid Diagnostic Sequencing of Stool DNA Using Targeted Nanopore Sequencing in Patients With a Pulmonary Tuberculosis Diagnosis Ness, Tara; Maphalala, Nontobeko; Khumalo, Wethusonkhe; Sibandze, Doctor; Seeger, Abigail; Madison, Maia; Vasiliu, Anca; Mulengwa, Durbin; Gascua, Clement; Ziyane, Mangaliso; Dlamini, Sindisiwe; Maphalala, Gugu; Bortz, Eric; Kay, Alexander; Lange, Christoph; Dreyer, Viola; Niemann, Tanja; Niemann, Stefan; DiNardo, Andrew; Mandalakas, Anna Share Save
Drug susceptibility testing for TB using the Xpert MTB/XDR assay on stool specimens Khumalo, W.; Maphalala, N.; Mulengwa, D.; Ziyane, M.; Sibandze, D. B.; Niemann, S.; Dreyer, V.; Seeger, A.; Madison, M.; Ness, T.; Jele, T.; Garcia-Basteiro, A. L.; Maphalala, G.; DiNardo, AR.; Mandalakas, AM.; Kay, A. Share Save
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EnteroBase in 2025: exploring the genomic epidemiology of bacterial pathogens Dyer, Nigel P.; Paeuker, Birgitta; Baxter, Laura; Gupta, Anshul; Bunk, Boyke; Overmann, Joerg; Diricks, Margo; Dreyer, Viola; Niemann, Stefan; Holt, Kathryn E.; Rahman, Mohammed; Brown, Paul E.; Stark, Richard; Zhou, Zhemin; Ott, Sascha; Nuebel, Ulrich Share Save
Whole-genome sequencing drug susceptibility testing is associated with positive MDR-TB treatment response Larsson, L.; Corbett, C.; Kalmambetova, G.; Utpatel, C.; Ahmedov, S.; Antonenka, U.; Iskakova, A.; Kadyrov, A.; Kohl, T. A.; Barilar, V.; Sahalchyk, E.; Niemann, S.; Hoffmann, H.; Kranzer, K. Share Save
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Dual-centre evaluation of the FluoroType MTBDR version 2 assay for detection of Mycobacterium tuberculosis complex and resistanceconferring mutations in pulmonary and extrapulmonary samples from Denmark, Germany and Sierra Leone Svensson, Erik; Ketelsen, Hannah; Andres, Sonke; Folkvardsen, Dorte Bek; Hillemann, Doris; Conteh, Ousman; Norman, Anders; Niemann, Stefan; Lillebaek, Troels; Kuhns, Martin Share Save
Phylogenomic and genomic analysis reveals unique and shared genetic signatures of Mycobacterium kansasii complex species Machado, Edson; Vasconcellos, Sidra; Gomes, Lia; Catanho, Marcos; Ramos, Jesus; de Carvalho, Luciana; Goldenberg, Telma; Redner, Paulo; Caldas, Paulo; Campos, Carlos; Dalcolmo, Margareth; Lourenco, Maria Cristina; Lasunskaia, Elena; Mussi, Vinicius; Spinasse, Lizania; Vinhas, Solange; Rigouts, Leen; Cogneau, Sari; de Rijk, Pim; Utpatel, Christian; Kaustova, Jarmila; van der Laan, Tridia; de Neeling, Han; Rastogi, Nalin; Levina, Klavdia; Kutt, Marge; Mokrousov, Igor; Zhuravlev, Viacheslav; Makhado, Ndivhu; Zolnir-Dovc, Manca; Jankovic, Vera; de Waard, Jacobus; Sisco, Maria Carolina; van Soolingen, Dick; Niemann, Stefan; de Jong, Bouke C.; Meehan, Conor J.; Suffys, Philip Share Save
A composite reference standard is needed for bedaquiline antimicrobial susceptibility testing for Mycobacterium tuberculosis complex Koeser, Claudio U.; Miotto, Paolo; Ismail, Nabila; Anthony, Richard M.; Utpatel, Christian; Merker, Matthias; Niemann, Stefan; Tahseen, Sabira; Rigouts, Leen; Rodrigues, Camilla; Omar, Shaheed V.; Farhat, Maha R.; Antonenka, Uladzimir; Hoffmann, Harald; Cirillo, Daniela M.; Schoen, Thomas Share Save
First detection of a Mycobacterium tuberculosis XDR clinical isolate harbouring an RpoB I491F mutation in a Ukrainian patient treated in Germany, October 2023 Friesens, Inna; Dreyer, Viola; Klingmueller, Angela; Zuber, Sylvia; Hoffmann, Ada M.; Suarez, Isabelle; Schuetz, Beatrice; Pressel, Tim; Andress, Soenke; Niemann, Stefan; Rybniker, Jan Share Save
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