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Derrick W. Crook

university of oxford

125H-index
693Paper Count
5.8WCitation Count
Published Papers 296
Publication Date
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny
err2026-02-09
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errMartin Hunt; Angie S. Hinrichs; Daniel Anderson; Lily Karim; Bethany L. Dearlove; Jeff Knaggs; Bede Constantinides; Philip W. Fowler; Gillian Rodger; Teresa Street; Sheila Lumley; Hermione Webster; Theo Sanderson; Christopher Ruis; Benjamin Kotzen; Nicola de Maio; Lucas N. Amenga-Etego; Dominic S. Y. Amuzu; Martin Avaro; Gordon A. Awandare; Reuben Ayivor-Djanie; Timothy Barkham; Matthew Bashton; Elizabeth M. Batty; Yaw Bediako; Denise De Belder; Estefania Benedetti; Andreas Bergthaler; Stefan A. Boers; Josefina Campos; Rosina Afua Ampomah Carr; Yuan Yi Constance Chen; Facundo Cuba; Maria Elena Dattero; Wanwisa Dejnirattisai; Alexander Dilthey; Kwabena Obeng Duedu; Lukas Endler; Ilka Engelmann; Ngiambudulu M. Francisco; Jonas Fuchs; Etienne Z. Gnimpieba; Soraya Groc; Jones Gyamfi; Dennis Heemskerk; Torsten Houwaart; Nei-yuan Hsiao; Matthew Huska; Martin Hölzer; Arash Iranzadeh; Hanna Jarva; Chandima Jeewandara; Bani Jolly; Rageema Joseph; Ravi Kant; Karrie Ko Kwan Ki; Satu Kurkela; Maija Lappalainen; Marie Lataretu; Jacob Lemieux; Chang Liu; Gathsaurie Neelika Malavige; Tapfumanei Mashe; Juthathip Mongkolsapaya; Brigitte Montes; Jose Arturo Molina Mora; Collins M. Morang’a; Bernard Mvula; Niranjan Nagarajan; Andrew Nelson; Joyce M. Ngoi; Joana Paula da Paixão; Marcus Panning; Tomas Poklepovich; Peter K. Quashie; Diyanath Ranasinghe; Mara Russo; James Emmanuel San; Nicholas D. Sanderson; Vinod Scaria; Gavin Screaton; October Michael Sessions; Tarja Sironen; Abay Sisay; Darren Smith; Teemu Smura; Piyada Supasa; Chayaporn Suphavilai; Jeremy Swann; Houriiyah Tegally; Bryan Tegomoh; Olli Vapalahti; Andreas Walker; Robert J. Wilkinson; Carolyn Williamson; Xavier Zair; Tulio de Oliveira; Timothy EA Peto; Derrick Crook; Russell Corbett-Detig; Zamin Iqbal
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Characterizing the performance of an antibiotic resistance prediction tool, gnomonicus, using a diverse test set of 2,663 Mycobacterium tuberculosis samples
err2025-12-01
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PREAI
errWesthead, Jeremy; Baker, Catriona S.; Brouard, Marc; Colpus, Matthew; Constantinides, Bede; Hall, Alexandra; Knaggs, Jeff; Alves, Marcela Lopes; Spies, Ruan; Thai, Hieu; Surrall, Sarah; Govender, Kumeren; Peto, Timothy E. A.; Crook, Derrick W.; Omar, Shaheed V.; Turner, Robert; Fowler, Philip W.
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Evaluating 12 automated, whole-genome sequencing analysis pipelines for Mycobacterium tuberculosis complex: a comparative study
err2025-10-21
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errRuan Spies; Derrick W Crook; Timothy E A Peto; Philip W Fowler; Robert Turner; Hieu Thai; James A Watson; Timothy M Walker
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Estimating the association of antimicrobial resistance genes with minimum inhibitory concentration in Escherichia coli: an observational study
err2025-10-07
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errSamuel Lipworth; Kevin Chau; Sarah Oakley; Lucinda Barrett; Derrick Crook; Tim Peto; A Sarah Walker; Nicole Stoesser
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Evaluation of SARS-CoV-2 lateral flow device sensitivity: a comparison of systematic laboratory assessments with manufacturer-reported sensitivity
err2025-08-27
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errRaghavendran Kulasegaran-Shylini; Abbie Bown; Tom Collinge; Alex Sienkiewicz; David W. Eyre; Derrick Crook; Ann Sarah Walker; John Bell; Deborah A. Williamson; Isabel Oliver; Mark Wilcox; Sue Hill; Tim Peto; Richard Vipond; Susan Hopkins; Tom Fowler
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Ribosome phenotypes for rapid classification of antibiotic-susceptible and resistant strains of Escherichia coli
err2025-02-26
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errFarrar, Alison; Turner, Piers; El Sayyed, Hafez; Feehily, Conor; Chatzimichail, Stelios; Ta, Sammi; Crook, Derrick; Andersson, Monique; Oakley, Sarah; Barrett, Lucinda; Nellaker, Christoffer; Stoesser, Nicole; Kapanidis, Achillefs
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Multiple introductions of NRCS- A Staphylococcus capitis to the neonatal intensive care unit drive neonatal bloodstream infections: a case- control and environmental genomic survey
err2025-01-07
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errLees, Emily A.; Gentry, Jessica; Webster, Hermione; Sanderson, Nicholas; Eyre, David; Wilson, Daniel; Lipworth, Sam; Crook, Derrick; Wong, T. H. Nicholas; Mark, Anthony; Jeffery, Katie; Paulus, Stephane; Young, Bernadette C.
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Comparison of direct cDNA and PCR-cDNA Nanopore sequencing of RNA from Escherichia coli isolates
err2024-10-25
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errRodger, Gillian; Lipworth, Samuel; Barrett, Lucinda; Oakley, Sarah; Crook, Derrick W.; Eyre, David W.; Stoesser, Nicole
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Dissemination and persistence of antimicrobial resistance (AMR) along the wastewater-river continuum
err2024-10-01
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errRead, Daniel S.; Gweon, H. Soon; Bowes, Michael J.; Anjum, Muna F.; Crook, Derrick W.; Chau, Kevin K.; Shaw, Liam P.; Hubbard, Alasdair; Abuoun, Manal; Tipper, Holly J.; Hoosdally, Sarah J.; Bailey, Mark J.; Walker, A. Sarah; Stoesser, Nicole
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Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of blaKPC-carbapenemase-producing Enterobacterales in a hospital setting
err2024-09-03
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errStoesser, N.; George, R.; Aiken, Z.; Phan, H. T. T.; Lipworth, S.; Quan, T. P.; Mathers, A. J.; De Maio, N.; Seale, A. C.; Eyre, D. W.; Vaughan, A.; Swann, J.; Peto, T. E. A.; Crook, D. W.; Cawthorne, J.; Dodgson, A.; Walker, A. S.
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Infection Inspection: using the power of citizen science for image-based prediction of antibiotic resistance in Escherichia coli treated with ciprofloxacin
err2024-08-22
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errFarrar, Alison; Feehily, Conor; Turner, Piers; Zagajewski, Alexander; Chatzimichail, Stelios; Crook, Derrick; Andersson, Monique; Oakley, Sarah; Barrett, Lucinda; El Sayyed, Hafez; Fowler, Philip W.; Nellaker, Christoffer; Kapanidis, Achillefs N.; Stoesser, Nicole
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Improving the representativeness of UK's national COVID-19 Infection Survey through spatio-temporal regression and post-stratification
err2024-06-24
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errPouwels, Koen B.; Eyre, David W.; House, Thomas; Aspey, Ben; Matthews, Philippa C.; Stoesser, Nicole; Newton, John N.; Diamond, Ian; Studley, Ruth; Taylor, Nick G. H.; Bell, John I.; Farrar, Jeremy; Kolenchery, Jaison; Marsden, Brian D.; Hoosdally, Sarah; Jones, E. Yvonne; Stuart, David I.; Crook, Derrick W.; Peto, Tim E. A.; Walker, A. Sarah
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The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies (vol 15, 1612, 2024)
err2024-04-09
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errLipworth, Samuel; Matlock, William; Shaw, Liam; Vihta, Karina-Doris; Rodger, Gillian; Chau, Kevin; Barker, Leanne; George, Sophie; Kavanagh, James; Davies, Timothy; Vaughan, Alison; Andersson, Monique; Jeffery, Katie; Oakley, Sarah; Morgan, Marcus; Hopkins, Susan; Peto, Timothy; Crook, Derrick; Walker, A. Sarah; Stoesser, Nicole
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Prediction of pyrazinamide resistance in Mycobacterium tuberculosis using structure-based machine-learning approaches
err2024-03-18
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errCarter, Joshua J.; Walker, Timothy M.; Walker, A. Sarah; Whitfield, Michael G.; Morlock, Glenn P.; Lynch, Charlotte, I; Adlard, Dylan; Peto, Timothy E. A.; Posey, James E.; Crook, Derrick W.; Fowler, Philip W.
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The plasmidome associated with Gram-negative bloodstream infections: A large-scale observational study using complete plasmid assemblies
err2024-02-22
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errLipworth, Samuel; Matlock, Willam; Shaw, Liam; Vihta, Karina-Doris; Rodger, Gillian; Chau, Kevin; Barker, Leanne; George, Sophie; Kavanagh, James; Davies, Timothy; Vaughan, Alison; Andersson, Monique; Jeffery, Katie; Oakley, Sarah; Morgan, Marcus; Hopkins, Susan; Peto, Timothy; Crook, Derrick; Walker, A. Sarah; Stoesser, Nicole
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Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach
err2024-01-12
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errBarilar, Ivan; Battaglia, Simone; Borroni, Emanuele; Brandao, Angela Pires; Brankin, Alice; Cabibbe, Andrea Maurizio; Carter, Joshua; Chetty, Darren; Cirillo, Daniela Maria; Claxton, Pauline; Clifton, David A.; Cohen, Ted; Coronel, Jorge; Crook, Derrick W.; Dreyer, Viola; Earle, Sarah G.; Escuyer, Vincent; Ferrazoli, Lucilaine; Fowler, Philip W.; Gao, George Fu; Gardy, Jennifer; Gharbia, Saheer; Ghisi, Kelen Teixeira; Ghodousi, Arash; Gibertoni Cruz, Ana Luiza; Grandjean, Louis; Grazian, Clara; Groenheit, Ramona; Guthrie, Jennifer L.; He, Wencong; Hoffmann, Harald; Hoosdally, Sarah J.; Hunt, Martin; Iqbal, Zamin; Ismail, Nazir Ahmed; Jarrett, Lisa; Joseph, Lavania; Jou, Ruwen; Kambli, Priti; Khot, Rukhsar; Knaggs, Jeff; Koch, Anastasia; Kohlerschmidt, Donna; Kouchaki, Samaneh; Lachapelle, Alexander S.; Lalvani, Ajit; Lapierre, Simon Grandjean; Laurenson, Ian F.; Letcher, Brice; Lin, Wan-Hsuan; Liu, Chunfa; Liu, Dongxin; Malone, Kerri M.; Mandal, Ayan; Mansjoe, Mikael; Calisto Matias, Daniela Vicente Lucena; Meintjes, Graeme; de Freitas Mendes, Flavia; Merker, Matthias; Mihalic, Marina; Millard, James; Miotto, Paolo; Mistry, Nerges; Moore, David; Musser, Kimberlee A.; Ngcamu, Dumisani; Nhung, Hoang Ngoc; Niemann, Stefan; Nilgiriwala, Kayzad Soli; Nimmo, Camus; O'Donnell, Max; Okozi, Nana; Oliveira, Rosangela Siqueira; Omar, Shaheed Vally; Paton, Nicholas; Peto, Timothy E. A.; Pinhata, Juliana Maira Watanabe; Plesnik, Sara; Puyen, Zully M.; Rabodoarivelo, Marie Sylvianne; Rakotosamimanana, Niaina; Rancoita, Paola M. V.; Rathod, Priti; Robinson, Esther Rhiannon; Rodger, Gillian; Rodrigues, Camilla; Rodwell, Timothy C.; Roohi, Aysha; Santos-Lazaro, David; Shah, Sanchi; Smith, Grace; Kohl, Thomas Andreas; Solano, Walter; Spitaleri, Andrea; Steyn, Adrie J. C.; Supply, Philip; Surve, Utkarsha; Tahseen, Sabira; Thuong, Nguyen Thuy Thuong; Thwaites, Guy; Todt, Katharina; Trovato, Alberto; Utpatel, Christian; Van Rie, Annelies; Vijay, Srinivasan; Walker, A. Sarah; Walker, Timothy M.; Warren, Robin; Werngren, Jim; Wijkander, Maria; Wilkinson, Robert J.; Wilson, Daniel J.; Wintringer, Penelope; Xiao, Yu-Xin; Yang, Yang; Yanlin, Zhao; Yao, Shen-Yuan; Zhu, Baoli
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Rapid identification of bacterial isolates using microfluidic adaptive channels and multiplexed fluorescence microscopy
err2024-01-01
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errChatzimichail, Stelios; Turner, Piers; Feehily, Conor; Farrar, Alison; Crook, Derrick; Andersson, Monique; Oakley, Sarah; Barrett, Lucinda; El Sayyed, Hafez; Kyropoulos, Jingwen; Nellaker, Christoffer; Stoesser, Nicole; Kapanidis, Achillefs N.
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Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli
err2023-12-15
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errDavies, Timothy J.; Swann, Jeremy; Sheppard, Anna E.; Pickford, Hayleigh; Lipworth, Samuel; AbuOun, Manal; Ellington, Matthew J.; Fowler, Philip W.; Hopkins, Susan; Hopkins, Katie L.; Crook, Derrick W.; Peto, Timothy E. A.; Anjum, Muna F.; Walker, A. Sarah; Stoesser, Nicole
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Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction (vol 9, mgen000910, 2023)
err2023-11-28
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errSanderson, Nicholas D.; Kapel, Natalia; Rodger, Gillian; Webster, Hermione; Lipworth, Samuel; Street, Teresa L.; Peto, Timothy; Crook, Derrick; Stoesser, Nicole
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Deep learning and single-cell phenotyping for rapid antimicrobial susceptibility detection in Escherichia coli
err2023-11-14
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errZagajewski, Alexander; Turner, Piers; Feehily, Conor; El Sayyed, Hafez; Andersson, Monique; Barrett, Lucinda; Oakley, Sarah; Stracy, Mathew; Crook, Derrick; Nellaker, Christoffer; Stoesser, Nicole; Kapanidis, Achillefs N.
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